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Conserved domains on  [gi|1939872727|ref|NP_112257|]
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microtubule-associated protein 1A [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00121 super family cl31754
MAEBL; Provisional
 1370-1607 6.67e-11

MAEBL; Provisional


The actual alignment was detected with superfamily member PTZ00121:

Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 68.63  E-value: 6.67e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1370 RQQDKTPEQKGRDLDEKDTAAELDKGPEPKEKDLDREDQGQRAGPPAEKdKASEQRDTDLQQTQATEPRDRAQE-RRDSE 1448
Cdd:PTZ00121  1261 RMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKK-KAEEAKKADEAKKKAEEAKKKADAaKKKAE 1339

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1449 EKDKSLELRDRTPEEK-DRILVQEDRApehsipeptqtdRAPDRKGTDDKEQKEEASEEKEQVleqkdwalgKEGETLDQ 1527
Cdd:PTZ00121  1340 EAKKAAEAAKAEAEAAaDEAEAAEEKA------------EAAEKKKEEAKKKADAAKKKAEEK---------KKADEAKK 1398

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1528 EARTAEQKDETLKEDKTQGQKSSFVEDKTTTSKETVLDQKSAEKADSVEQQDGAALEKTRALGLEESPAEGSKAREQEKK 1607
Cdd:PTZ00121  1399 KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
PTZ00121 super family cl31754
MAEBL; Provisional
 311-760 5.53e-09

MAEBL; Provisional


The actual alignment was detected with superfamily member PTZ00121:

Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 62.47  E-value: 5.53e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  311 SKIKHRADSKESLKAAPKTAVSKLAKREEVLEEGAKEARSELAKELAKTEKKAKEPSEKPPEKPSKSERVRGESSEALKA 390
Cdd:PTZ00121  1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA 1420

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  391 EK-RRLIKDKAGKKHLKEKISKLEEKKDKEKKEIKKERKELKKEEGRKEEKKDAKKDEKRKDTKPEVKKLSKPDLKPFTP 469
Cdd:PTZ00121  1421 DEaKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1500

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  470 EVRKtlykaKAPGRVKVDKGRAARGEKELSSEPRTPPAQKGAAPPAAVSGHRELALSSPEDLTQDfEELKREERGLLAEQ 549
Cdd:PTZ00121  1501 EAKK-----AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKA-EEKKKAEEAKKAEE 1574

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  550 RDTGLGEKPLPADATEQGHPSAAIQVTQPSGPV------------LEGEHVEREKEVVPDSPGDKGSTNRGPDSGAEVEK 617
Cdd:PTZ00121  1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMkaeeakkaeeakIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  618 EKETWEERKQREAElgpentaaREESEAEVKEDVIEKAELEEMEETHPSDEEGEETKAESFYQKHTQEALKASPKSREAL 697
Cdd:PTZ00121  1655 AEEENKIKAAEEAK--------KAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1939872727  698 GGRDLGFQGKAPEKETASFLSSLATPAGATEHVSYIQDETIPGYSETEQTISD--EEIHDEPDER 760
Cdd:PTZ00121  1727 ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAviEEELDEEDEK 1791
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 1986-2445 9.03e-09

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.49  E-value: 9.03e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1986 PASPQNLQSDTPAFSYASLAGPAVPPRQEPDPGPNVEPSITPPAVPPRAPISL--------------------SKDLSPP 2045
Cdd:PHA03247  2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEpvhprmltwirgleelasddAGDPPPP 2554

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2046 LNGSTVSCSPDRRTPSPK---------------------ETGRGHWDDGTNDSDLEKGAREQPEKETRSPSPHHPMPMGH 2104
Cdd:PHA03247  2555 LPPAAPPAAPDRSVPPPRpaprpsepavtsrarrpdappQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPA 2634

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2105 SSLWPETEAYSSLSSDSHLGSVRP---SLDFPASAFGFSSLQPAPPQLPSPAEPRsAPCGSLAFSGD----------RAL 2171
Cdd:PHA03247  2635 ANEPDPHPPPTVPPPERPRDDPAPgrvSRPRRARRLGRAAQASSPPQRPRRRAAR-PTVGSLTSLADpppppptpepAPH 2713

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2172 ALVPGTPTRTRHDEYLEVTKAPSLDSSLPQLPS-PSSPGGPllsnlPRPASPALSEG--SSSEATTPVISSVAERFPPGL 2248
Cdd:PHA03247  2714 ALVSATPLPPGPAAARQASPALPAAPAPPAVPAgPATPGGP-----ARPARPPTTAGppAPAPPAAPAAGPPRRLTRPAV 2788

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2249 EAAEQSAEGLGSGKESAAHSLWDLTPLSPAPSASLDLAPAPAPAPAPAPAPGLPGDLGDGTLPCRPECT--GELTKKPSP 2326
Cdd:PHA03247  2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVApgGDVRRRPPS 2868

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2327 FLSPSGDHEANGPGETSLNPPGfvTATAEKEEAEAPHAWERGSWPEGAERSSRPDTLLSSEQPLRPGKSSGGPPCSLSSE 2406
Cdd:PHA03247  2869 RSPAAKPAAPARPPVRRLARPA--VSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT 2946

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*..
gi 1939872727 2407 VEAGPQGCAT--DPRPHCGELSPS------FLNPPLPPSTDDSDLST 2445
Cdd:PHA03247  2947 TDPAGAGEPSgaVPQPWLGALVPGrvavprFRVPQPAPSREAPASST 2993
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
 1743-2112 5.41e-06

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 52.48  E-value: 5.41e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1743 PVGLPPEEEDKLTRSPFEIISPPASPPEMTGQRVPSAPGQESPVPDTESTAPMRNEPTTPSWLAEIPPWVPKDRPLPPAP 1822
Cdd:PHA03307    72 PPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAAS 151

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1823 LSPAPAPPTPAPEPHTPVP-FSWGLAEYDSVVAAVQEGAAELEGGPYSPLGKDY---RKAEGEREGEGGAGAPDSSSFSP 1898
Cdd:PHA03307   152 PPAAGASPAAVASDAASSRqAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRpprRSSPISASASSPAPAPGRSAADD 231

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1899 KVPEAGESLATRDTEQTEPEQREPTPYPDERSFQYADIYEQMMLTGLGPACPTREPPLGASGDWPPHLSTKEEAAGCNTS 1978
Cdd:PHA03307   232 AGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSS 311

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1979 AEKeTSSPASPQNLQSDTPAFSYASLAGPAVPPRQEPDPGPNvePSITPPAVPPRAPISLSKDLSPPLNGSTVSCSPDRR 2058
Cdd:PHA03307   312 PRA-SSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPS--PSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRR 388

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1939872727 2059 TPSPKETGRGHWDDGTNDSDLEKGAREQPEKETRSPSPHHPMPMGHSS--LWPETE 2112
Cdd:PHA03307   389 RARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSgePWPGSP 444
ComEC super family cl28169
DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily ...
 46-149 4.96e-04

DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily [Intracellular trafficking, secretion, and vesicular transport];


The actual alignment was detected with superfamily member COG2333:

Pssm-ID: 441904 [Multi-domain]  Cd Length: 253  Bit Score: 44.46  E-value: 4.96e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727   46 GRGDSALF-AVNGFNILVDGGSDRKSCFWKLV-------RHLDRIDSVLLTHIGADNLPGINGLLQR-KVAELEE-EQSQ 115
Cdd:COG2333      9 GQGDAILIrTPDGKTILIDTGPRPSFDAGERVvlpylraLGIRRLDLLVLTHPDADHIGGLAAVLEAfPVGRVLVsGPPD 88

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1939872727  116 GSSSYSDWVKNLISPELGVVFFNVPDKLRLPDAS 149
Cdd:COG2333     89 TSETYERLLEALKEKGIPVRPCRAGDTWQLGGVR 122
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 2296-2624 5.82e-03

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 5.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2296 APAPGLPGDLGDGTLPCRPECTGELTKKPSPFLSPSGDHEANGPGETSLNPPgfvtataekEEAEAPHAWERGSWPEGAE 2375
Cdd:PHA03247  2598 PRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPP---------ERPRDDPAPGRVSRPRRAR 2668

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2376 RSSRPDTllSSEQPLRPGKSSGGPPC-SLSSEVEAGPQGCATDPRPHcgelsPSFLNPPLPPSTDDSDLSTEEARLAgkg 2454
Cdd:PHA03247  2669 RLGRAAQ--ASSPPQRPRRRAARPTVgSLTSLADPPPPPPTPEPAPH-----ALVSATPLPPGPAAARQASPALPAA--- 2738

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2455 grrRVGRPGATGGPCPMADETPPTSASDSGSSQSDSDVPPETEECPSITAEAALDSDEDGDFLPV--DKAGGVSGTHHPR 2532
Cdd:PHA03247  2739 ---PAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSpwDPADPPAAVLAPA 2815

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2533 PGHDPPPTPLPDPRPSPPRPDVCMADPEGLSSESGRVERLREKGRP-GRRAPGRAKPASPARRLDIRGKRSPTPgkgPVD 2611
Cdd:PHA03247  2816 AALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDvRRRPPSRSPAAKPAAPARPPVRRLARP---AVS 2892

                          330
                   ....*....|...
gi 1939872727 2612 RTSRTVPRPRSTP 2624
Cdd:PHA03247  2893 RSTESFALPPDQP 2905
 
Name Accession Description Interval E-value
PTZ00121 PTZ00121
MAEBL; Provisional
 1370-1607 6.67e-11

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 68.63  E-value: 6.67e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1370 RQQDKTPEQKGRDLDEKDTAAELDKGPEPKEKDLDREDQGQRAGPPAEKdKASEQRDTDLQQTQATEPRDRAQE-RRDSE 1448
Cdd:PTZ00121  1261 RMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKK-KAEEAKKADEAKKKAEEAKKKADAaKKKAE 1339

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1449 EKDKSLELRDRTPEEK-DRILVQEDRApehsipeptqtdRAPDRKGTDDKEQKEEASEEKEQVleqkdwalgKEGETLDQ 1527
Cdd:PTZ00121  1340 EAKKAAEAAKAEAEAAaDEAEAAEEKA------------EAAEKKKEEAKKKADAAKKKAEEK---------KKADEAKK 1398

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1528 EARTAEQKDETLKEDKTQGQKSSFVEDKTTTSKETVLDQKSAEKADSVEQQDGAALEKTRALGLEESPAEGSKAREQEKK 1607
Cdd:PTZ00121  1399 KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
PTZ00121 PTZ00121
MAEBL; Provisional
 311-760 5.53e-09

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 62.47  E-value: 5.53e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  311 SKIKHRADSKESLKAAPKTAVSKLAKREEVLEEGAKEARSELAKELAKTEKKAKEPSEKPPEKPSKSERVRGESSEALKA 390
Cdd:PTZ00121  1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA 1420

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  391 EK-RRLIKDKAGKKHLKEKISKLEEKKDKEKKEIKKERKELKKEEGRKEEKKDAKKDEKRKDTKPEVKKLSKPDLKPFTP 469
Cdd:PTZ00121  1421 DEaKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1500

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  470 EVRKtlykaKAPGRVKVDKGRAARGEKELSSEPRTPPAQKGAAPPAAVSGHRELALSSPEDLTQDfEELKREERGLLAEQ 549
Cdd:PTZ00121  1501 EAKK-----AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKA-EEKKKAEEAKKAEE 1574

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  550 RDTGLGEKPLPADATEQGHPSAAIQVTQPSGPV------------LEGEHVEREKEVVPDSPGDKGSTNRGPDSGAEVEK 617
Cdd:PTZ00121  1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMkaeeakkaeeakIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  618 EKETWEERKQREAElgpentaaREESEAEVKEDVIEKAELEEMEETHPSDEEGEETKAESFYQKHTQEALKASPKSREAL 697
Cdd:PTZ00121  1655 AEEENKIKAAEEAK--------KAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1939872727  698 GGRDLGFQGKAPEKETASFLSSLATPAGATEHVSYIQDETIPGYSETEQTISD--EEIHDEPDER 760
Cdd:PTZ00121  1727 ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAviEEELDEEDEK 1791
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1986-2445 9.03e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.49  E-value: 9.03e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1986 PASPQNLQSDTPAFSYASLAGPAVPPRQEPDPGPNVEPSITPPAVPPRAPISL--------------------SKDLSPP 2045
Cdd:PHA03247  2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEpvhprmltwirgleelasddAGDPPPP 2554

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2046 LNGSTVSCSPDRRTPSPK---------------------ETGRGHWDDGTNDSDLEKGAREQPEKETRSPSPHHPMPMGH 2104
Cdd:PHA03247  2555 LPPAAPPAAPDRSVPPPRpaprpsepavtsrarrpdappQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPA 2634

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2105 SSLWPETEAYSSLSSDSHLGSVRP---SLDFPASAFGFSSLQPAPPQLPSPAEPRsAPCGSLAFSGD----------RAL 2171
Cdd:PHA03247  2635 ANEPDPHPPPTVPPPERPRDDPAPgrvSRPRRARRLGRAAQASSPPQRPRRRAAR-PTVGSLTSLADpppppptpepAPH 2713

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2172 ALVPGTPTRTRHDEYLEVTKAPSLDSSLPQLPS-PSSPGGPllsnlPRPASPALSEG--SSSEATTPVISSVAERFPPGL 2248
Cdd:PHA03247  2714 ALVSATPLPPGPAAARQASPALPAAPAPPAVPAgPATPGGP-----ARPARPPTTAGppAPAPPAAPAAGPPRRLTRPAV 2788

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2249 EAAEQSAEGLGSGKESAAHSLWDLTPLSPAPSASLDLAPAPAPAPAPAPAPGLPGDLGDGTLPCRPECT--GELTKKPSP 2326
Cdd:PHA03247  2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVApgGDVRRRPPS 2868

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2327 FLSPSGDHEANGPGETSLNPPGfvTATAEKEEAEAPHAWERGSWPEGAERSSRPDTLLSSEQPLRPGKSSGGPPCSLSSE 2406
Cdd:PHA03247  2869 RSPAAKPAAPARPPVRRLARPA--VSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT 2946

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*..
gi 1939872727 2407 VEAGPQGCAT--DPRPHCGELSPS------FLNPPLPPSTDDSDLST 2445
Cdd:PHA03247  2947 TDPAGAGEPSgaVPQPWLGALVPGrvavprFRVPQPAPSREAPASST 2993
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 1743-2112 5.41e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 52.48  E-value: 5.41e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1743 PVGLPPEEEDKLTRSPFEIISPPASPPEMTGQRVPSAPGQESPVPDTESTAPMRNEPTTPSWLAEIPPWVPKDRPLPPAP 1822
Cdd:PHA03307    72 PPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAAS 151

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1823 LSPAPAPPTPAPEPHTPVP-FSWGLAEYDSVVAAVQEGAAELEGGPYSPLGKDY---RKAEGEREGEGGAGAPDSSSFSP 1898
Cdd:PHA03307   152 PPAAGASPAAVASDAASSRqAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRpprRSSPISASASSPAPAPGRSAADD 231

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1899 KVPEAGESLATRDTEQTEPEQREPTPYPDERSFQYADIYEQMMLTGLGPACPTREPPLGASGDWPPHLSTKEEAAGCNTS 1978
Cdd:PHA03307   232 AGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSS 311

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1979 AEKeTSSPASPQNLQSDTPAFSYASLAGPAVPPRQEPDPGPNvePSITPPAVPPRAPISLSKDLSPPLNGSTVSCSPDRR 2058
Cdd:PHA03307   312 PRA-SSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPS--PSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRR 388

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1939872727 2059 TPSPKETGRGHWDDGTNDSDLEKGAREQPEKETRSPSPHHPMPMGHSS--LWPETE 2112
Cdd:PHA03307   389 RARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSgePWPGSP 444
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 1389-1611 5.29e-05

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 48.94  E-value: 5.29e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1389 AAELDKGPEPKEKDLDREDQGQRAGPP--AEKDKASEQRDTDLQQTQATE--PRDRAQERRDSEEKDkslelrdrTPEEK 1464
Cdd:NF033875    43 AAELDTQPGTTTVQPDNPDPQSGSETPktAVSEEATVQKDTTSQPTKVEEvaSEKNGAEQSSATPND--------TTNAQ 114

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1465 DRILVQEDRAPEHSIPEPtQTDRAPDRKGTDDKEQKEEASeekeqvleqKDWALGKEGETLDQEARTAE-QKDETLKEDK 1543
Cdd:NF033875   115 QPTVGAEKSAQEQPVVSP-ETTNEPLGQPTEVAPAENEAN---------KSTSIPKEFETPDVDKAVDEaKKDPNITVVE 184

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1939872727 1544 TQGQKSSFVEDKTTTSKETVLDQKSAEKADSVEQQdgAALEKTRALGLEESPAE-GSKAREQEKKYWKE 1611
Cdd:NF033875   185 KPAEDLGNVSSKDLAAKEKEVDQLQKEQAKKIAQQ--AAELKAKNEKIAKENAEiAAKNKAEKERYEKE 251
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 1980-2222 7.78e-05

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 48.61  E-value: 7.78e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1980 EKETSSPASPQNLQSDTPAFSYASlagPAVPPRQEPDPGPNVEPSITPPAVPPRAPISLSKDLSPPLNGSTVSCSPdrrt 2059
Cdd:pfam03154  155 ESDSDSSAQQQILQTQPPVLQAQS---GAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAP---- 227

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2060 pspketgrghwddgtnDSDLEKGAREQPEketRSPSPHHPMPMGHSSLWPETEAYSSLSSDSHLGSVRPsldfpasafGF 2139
Cdd:pfam03154  228 ----------------HTLIQQTPTLHPQ---RLPSPHPPLQPMTQPPPPSQVSPQPLPQPSLHGQMPP---------MP 279

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2140 SSLQPAPPQLPSPAEPRSAPCGSLAFSGDralaLVPGTPTRTRHDEYLEVTKAPSLDSSLPQLPSPSSPGGPLLSNLPRP 2219
Cdd:pfam03154  280 HSLQTGPSHMQHPVPPQPFPLTPQSSQSQ----VPPGPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHI 355


                   ...
gi 1939872727 2220 ASP 2222
Cdd:pfam03154  356 KPP 358
ComEC COG2333
DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily ...
 46-149 4.96e-04

DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441904 [Multi-domain]  Cd Length: 253  Bit Score: 44.46  E-value: 4.96e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727   46 GRGDSALF-AVNGFNILVDGGSDRKSCFWKLV-------RHLDRIDSVLLTHIGADNLPGINGLLQR-KVAELEE-EQSQ 115
Cdd:COG2333      9 GQGDAILIrTPDGKTILIDTGPRPSFDAGERVvlpylraLGIRRLDLLVLTHPDADHIGGLAAVLEAfPVGRVLVsGPPD 88

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1939872727  116 GSSSYSDWVKNLISPELGVVFFNVPDKLRLPDAS 149
Cdd:COG2333     89 TSETYERLLEALKEKGIPVRPCRAGDTWQLGGVR 122
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 1316-1535 5.20e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 42.29  E-value: 5.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1316 EWEGKAPGKEK-EPELKSETRQQKGQILPEKVAVVEQDLIIHQKDGALDEenkpgrQQDKTPEQKGRDLDEKDTAAELDK 1394
Cdd:TIGR00927  680 ESEGEIPAERKgEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDE------GEIETGEEGEEVEDEGEGEAEGKH 753

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1395 GPEPKEKDLDREDQGQRAGPPAEKDKASEQRDTDLQQTQATEPRDRAQERRDSEEKDKSLELRDRTPEEKDRILVQEDRA 1474
Cdd:TIGR00927  754 EVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETG 833

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1939872727 1475 PEHSIPEpTQTDRAPDRKGTD-----------DKEQKEEASEEKEQVLEQKDWALGKEGETLDQEARTAEQK 1535
Cdd:TIGR00927  834 EQELNAE-NQGEAKQDEKGVDggggsdggdseEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQK 904
PHA03247 PHA03247
large tegument protein UL36; Provisional
 2296-2624 5.82e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 5.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2296 APAPGLPGDLGDGTLPCRPECTGELTKKPSPFLSPSGDHEANGPGETSLNPPgfvtataekEEAEAPHAWERGSWPEGAE 2375
Cdd:PHA03247  2598 PRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPP---------ERPRDDPAPGRVSRPRRAR 2668

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2376 RSSRPDTllSSEQPLRPGKSSGGPPC-SLSSEVEAGPQGCATDPRPHcgelsPSFLNPPLPPSTDDSDLSTEEARLAgkg 2454
Cdd:PHA03247  2669 RLGRAAQ--ASSPPQRPRRRAARPTVgSLTSLADPPPPPPTPEPAPH-----ALVSATPLPPGPAAARQASPALPAA--- 2738

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2455 grrRVGRPGATGGPCPMADETPPTSASDSGSSQSDSDVPPETEECPSITAEAALDSDEDGDFLPV--DKAGGVSGTHHPR 2532
Cdd:PHA03247  2739 ---PAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSpwDPADPPAAVLAPA 2815

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2533 PGHDPPPTPLPDPRPSPPRPDVCMADPEGLSSESGRVERLREKGRP-GRRAPGRAKPASPARRLDIRGKRSPTPgkgPVD 2611
Cdd:PHA03247  2816 AALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDvRRRPPSRSPAAKPAAPARPPVRRLARP---AVS 2892

                          330
                   ....*....|...
gi 1939872727 2612 RTSRTVPRPRSTP 2624
Cdd:PHA03247  2893 RSTESFALPPDQP 2905
 
Name Accession Description Interval E-value
PTZ00121 PTZ00121
MAEBL; Provisional
 1370-1607 6.67e-11

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 68.63  E-value: 6.67e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1370 RQQDKTPEQKGRDLDEKDTAAELDKGPEPKEKDLDREDQGQRAGPPAEKdKASEQRDTDLQQTQATEPRDRAQE-RRDSE 1448
Cdd:PTZ00121  1261 RMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKK-KAEEAKKADEAKKKAEEAKKKADAaKKKAE 1339

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1449 EKDKSLELRDRTPEEK-DRILVQEDRApehsipeptqtdRAPDRKGTDDKEQKEEASEEKEQVleqkdwalgKEGETLDQ 1527
Cdd:PTZ00121  1340 EAKKAAEAAKAEAEAAaDEAEAAEEKA------------EAAEKKKEEAKKKADAAKKKAEEK---------KKADEAKK 1398

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1528 EARTAEQKDETLKEDKTQGQKSSFVEDKTTTSKETVLDQKSAEKADSVEQQDGAALEKTRALGLEESPAEGSKAREQEKK 1607
Cdd:PTZ00121  1399 KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
PTZ00121 PTZ00121
MAEBL; Provisional
 1320-1625 1.18e-10

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 67.86  E-value: 1.18e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1320 KAPGKEKEPELKSETRQQKGQIL--PEKVAVVEQDLIIHQKDGALDEENKPGRQQDKTPEQKGRDLDEKDTAAELDKGPE 1397
Cdd:PTZ00121  1273 KAEEARKADELKKAEEKKKADEAkkAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA 1352

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1398 PKEKD-------------LDREDQGQRAgpPAEKDKASEQRDTDLQQTQATEPRDRAQERRDSEEKDKSLELRDRTPEEK 1464
Cdd:PTZ00121  1353 EAAADeaeaaeekaeaaeKKKEEAKKKA--DAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEK 1430

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1465 DRILVQEDRAPEHSIPEPTQTDRAPDRKGTDDKEQKEEA--SEEKEQVLEQKdwalgKEGETLDQEARTAEQKDETLKED 1542
Cdd:PTZ00121  1431 KKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAkkADEAKKKAEEA-----KKADEAKKKAEEAKKKADEAKKA 1505

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1543 KTQGQKSSfvEDKTTTSKETVLDQKSAEKADSVEQQDGAAlEKTRALGL----EESPAEGSKAREQEKKywKEQDVVQGW 1618
Cdd:PTZ00121  1506 AEAKKKAD--EAKKAEEAKKADEAKKAEEAKKADEAKKAE-EKKKADELkkaeELKKAEEKKKAEEAKK--AEEDKNMAL 1580


                   ....*..
gi 1939872727 1619 RETSPTR 1625
Cdd:PTZ00121  1581 RKAEEAK 1587
PTZ00121 PTZ00121
MAEBL; Provisional
 1314-1656 3.38e-10

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 66.32  E-value: 3.38e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1314 AVEWEGKAPGKEKEPELKSETRQQK-----GQILPEKVAVVEQDLIIHQKDGAlDEENKPGRQQDKTPEQKGRDLDEKDT 1388
Cdd:PTZ00121  1433 ADEAKKKAEEAKKADEAKKKAEEAKkaeeaKKKAEEAKKADEAKKKAEEAKKA-DEAKKKAEEAKKKADEAKKAAEAKKK 1511

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1389 AAELDKGPEPKEKDLDREDQGQRAGPPA----EKDKASEQRDTDlQQTQATEPRDRAQERRDSEEKD------------- 1451
Cdd:PTZ00121  1512 ADEAKKAEEAKKADEAKKAEEAKKADEAkkaeEKKKADELKKAE-ELKKAEEKKKAEEAKKAEEDKNmalrkaeeakkae 1590

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1452 -KSLELRDRTPEEKDRILVQEDRAPEHSIPEPTQTDRAPD-RKGTDDKEQKEEASEEKEQVLEQKDWALGKEGETLDQEA 1529
Cdd:PTZ00121  1591 eARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEeKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1530 RTAEQKDETLK---EDKTQGQKSSFVEDKTTTSKETVLDQKSAEKADSVEQQDGAALEKTRALGLEESPAEGSKAREQEK 1606
Cdd:PTZ00121  1671 EEDKKKAEEAKkaeEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1607 KYWKEQDVVQGWRETSPTRGEPVGGQKEPVPAWEGKSPEQEVRYWRDRDI 1656
Cdd:PTZ00121  1751 KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
PTZ00121 PTZ00121
MAEBL; Provisional
 311-760 5.53e-09

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 62.47  E-value: 5.53e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  311 SKIKHRADSKESLKAAPKTAVSKLAKREEVLEEGAKEARSELAKELAKTEKKAKEPSEKPPEKPSKSERVRGESSEALKA 390
Cdd:PTZ00121  1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA 1420

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  391 EK-RRLIKDKAGKKHLKEKISKLEEKKDKEKKEIKKERKELKKEEGRKEEKKDAKKDEKRKDTKPEVKKLSKPDLKPFTP 469
Cdd:PTZ00121  1421 DEaKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1500

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  470 EVRKtlykaKAPGRVKVDKGRAARGEKELSSEPRTPPAQKGAAPPAAVSGHRELALSSPEDLTQDfEELKREERGLLAEQ 549
Cdd:PTZ00121  1501 EAKK-----AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKA-EEKKKAEEAKKAEE 1574

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  550 RDTGLGEKPLPADATEQGHPSAAIQVTQPSGPV------------LEGEHVEREKEVVPDSPGDKGSTNRGPDSGAEVEK 617
Cdd:PTZ00121  1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMkaeeakkaeeakIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  618 EKETWEERKQREAElgpentaaREESEAEVKEDVIEKAELEEMEETHPSDEEGEETKAESFYQKHTQEALKASPKSREAL 697
Cdd:PTZ00121  1655 AEEENKIKAAEEAK--------KAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1939872727  698 GGRDLGFQGKAPEKETASFLSSLATPAGATEHVSYIQDETIPGYSETEQTISD--EEIHDEPDER 760
Cdd:PTZ00121  1727 ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAviEEELDEEDEK 1791
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1986-2445 9.03e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.49  E-value: 9.03e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1986 PASPQNLQSDTPAFSYASLAGPAVPPRQEPDPGPNVEPSITPPAVPPRAPISL--------------------SKDLSPP 2045
Cdd:PHA03247  2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEpvhprmltwirgleelasddAGDPPPP 2554

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2046 LNGSTVSCSPDRRTPSPK---------------------ETGRGHWDDGTNDSDLEKGAREQPEKETRSPSPHHPMPMGH 2104
Cdd:PHA03247  2555 LPPAAPPAAPDRSVPPPRpaprpsepavtsrarrpdappQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPA 2634

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2105 SSLWPETEAYSSLSSDSHLGSVRP---SLDFPASAFGFSSLQPAPPQLPSPAEPRsAPCGSLAFSGD----------RAL 2171
Cdd:PHA03247  2635 ANEPDPHPPPTVPPPERPRDDPAPgrvSRPRRARRLGRAAQASSPPQRPRRRAAR-PTVGSLTSLADpppppptpepAPH 2713

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2172 ALVPGTPTRTRHDEYLEVTKAPSLDSSLPQLPS-PSSPGGPllsnlPRPASPALSEG--SSSEATTPVISSVAERFPPGL 2248
Cdd:PHA03247  2714 ALVSATPLPPGPAAARQASPALPAAPAPPAVPAgPATPGGP-----ARPARPPTTAGppAPAPPAAPAAGPPRRLTRPAV 2788

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2249 EAAEQSAEGLGSGKESAAHSLWDLTPLSPAPSASLDLAPAPAPAPAPAPAPGLPGDLGDGTLPCRPECT--GELTKKPSP 2326
Cdd:PHA03247  2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVApgGDVRRRPPS 2868

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2327 FLSPSGDHEANGPGETSLNPPGfvTATAEKEEAEAPHAWERGSWPEGAERSSRPDTLLSSEQPLRPGKSSGGPPCSLSSE 2406
Cdd:PHA03247  2869 RSPAAKPAAPARPPVRRLARPA--VSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT 2946

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*..
gi 1939872727 2407 VEAGPQGCAT--DPRPHCGELSPS------FLNPPLPPSTDDSDLST 2445
Cdd:PHA03247  2947 TDPAGAGEPSgaVPQPWLGALVPGrvavprFRVPQPAPSREAPASST 2993
PTZ00121 PTZ00121
MAEBL; Provisional
 311-696 1.73e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 57.46  E-value: 1.73e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  311 SKIKHRADSKESLKAAPKTAVSKLAKREEV-----LEEGAKEARSELAKELAKTEKKAKEPSEKPPEKPSKSERVRGESS 385
Cdd:PTZ00121  1260 ARMAHFARRQAAIKAEEARKADELKKAEEKkkadeAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAE 1339

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  386 EALKAEKRRLIKDKAGKKHLKEKISKLEEKKDKEKKEIKKERKELKKEEGRKEEKKDAKKDEKRKDTKPEVKKLSKP--- 462
Cdd:PTZ00121  1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAkkk 1419

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  463 --DLKPFTPEVRKT-LYKAKAPGRVKVDKGRAARGEKELSSEPRTPPAQKGAAPPAAVSGHR-----------ELALSSP 528
Cdd:PTZ00121  1420 adEAKKKAEEKKKAdEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEakkadeakkkaEEAKKKA 1499

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  529 EDLTQDFEELKREERGLLAEQRDTglGEKPLPADATEQGHPSAAIQVTQPSGPVLEGEHVEREKEV-----VPDSPGDKG 603
Cdd:PTZ00121  1500 DEAKKAAEAKKKADEAKKAEEAKK--ADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKkkaeeAKKAEEDKN 1577

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  604 STNRGPDSGAEVEkEKETWEERKQREAELGPENTAAREESEAEVK-EDVIEKAELEEMEETHPSDEEGEETKAESFYQKH 682
Cdd:PTZ00121  1578 MALRKAEEAKKAE-EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKaEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAE 1656

                          410
                   ....*....|....
gi 1939872727  683 TQEALKASPKSREA 696
Cdd:PTZ00121  1657 EENKIKAAEEAKKA 1670
PTZ00121 PTZ00121
MAEBL; Provisional
 1320-1614 1.33e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 54.38  E-value: 1.33e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1320 KAPGKEKEPELKS-------ETRQQKGQILPEKVAVVEQDLIIHQKDGALDEENKPGRQQDKTPEQ--KGRDLDEKDTAA 1390
Cdd:PTZ00121  1565 KAEEAKKAEEDKNmalrkaeEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEekKKVEQLKKKEAE 1644

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1391 ELDKGPEPKEKDldrEDQGQRAGPPAEKDKASEQRDTDLQQTQATEPRDRAQERRDSEEKDKSLELRDRTPEEKdRILVQ 1470
Cdd:PTZ00121  1645 EKKKAEELKKAE---EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK-KKAEE 1720

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1471 EDRAPEHSIPEPTQTdrapDRKGTDDKEQKEEASEEKEQvlEQKDWALGKEGETLDQEARtaEQKDETLKED-KTQGQKS 1549
Cdd:PTZ00121  1721 LKKAEEENKIKAEEA----KKEAEEDKKKAEEAKKDEEE--KKKIAHLKKEEEKKAEEIR--KEKEAVIEEElDEEDEKR 1792

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1550 SFVEDKTT----------------------TSKETvLDQKSAEKADSVEQQ--DGAALEKTRALGLEESPAEGSK-AREQ 1604
Cdd:PTZ00121  1793 RMEVDKKIkdifdnfaniieggkegnlvinDSKEM-EDSAIKEVADSKNMQleEADAFEKHKFNKNNENGEDGNKeADFN 1871

                          330
                   ....*....|
gi 1939872727 1605 EKKYWKEQDV 1614
Cdd:PTZ00121  1872 KEKDLKEDDE 1881
PTZ00121 PTZ00121
MAEBL; Provisional
 1378-1607 3.17e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 53.22  E-value: 3.17e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1378 QKGRDLDEKDTAAELDKGPE-PKEKDLDREDQGQRAgppAEKDKASEQRdtdlqqtQATEPRdRAQERR-------DSEE 1449
Cdd:PTZ00121  1173 EDAKKAEAARKAEEVRKAEElRKAEDARKAEAARKA---EEERKAEEAR-------KAEDAK-KAEAVKkaeeakkDAEE 1241

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1450 KDKSLELRDRTPEEKDRILVQEDRAPEHSIPEPTQTDRAPDRKGTDDKEQKEEA--SEEKEQVLEQKDWA-LGKEGETLD 1526
Cdd:PTZ00121  1242 AKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAkkAEEKKKADEAKKKAeEAKKADEAK 1321

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1527 QEARTAEQKDETLKEDKTQGQKSSFVEDKTTTSKETVLdQKSAEKADSVEQQDGAalEKTRALGLEESPAEGSKAREQEK 1606
Cdd:PTZ00121  1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEA-EAAEEKAEAAEKKKEE--AKKKADAAKKKAEEKKKADEAKK 1398


                   .
gi 1939872727 1607 K 1607
Cdd:PTZ00121  1399 K 1399
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 1743-2112 5.41e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 52.48  E-value: 5.41e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1743 PVGLPPEEEDKLTRSPFEIISPPASPPEMTGQRVPSAPGQESPVPDTESTAPMRNEPTTPSWLAEIPPWVPKDRPLPPAP 1822
Cdd:PHA03307    72 PPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAAS 151

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1823 LSPAPAPPTPAPEPHTPVP-FSWGLAEYDSVVAAVQEGAAELEGGPYSPLGKDY---RKAEGEREGEGGAGAPDSSSFSP 1898
Cdd:PHA03307   152 PPAAGASPAAVASDAASSRqAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRpprRSSPISASASSPAPAPGRSAADD 231

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1899 KVPEAGESLATRDTEQTEPEQREPTPYPDERSFQYADIYEQMMLTGLGPACPTREPPLGASGDWPPHLSTKEEAAGCNTS 1978
Cdd:PHA03307   232 AGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSS 311

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1979 AEKeTSSPASPQNLQSDTPAFSYASLAGPAVPPRQEPDPGPNvePSITPPAVPPRAPISLSKDLSPPLNGSTVSCSPDRR 2058
Cdd:PHA03307   312 PRA-SSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPS--PSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRR 388

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1939872727 2059 TPSPKETGRGHWDDGTNDSDLEKGAREQPEKETRSPSPHHPMPMGHSS--LWPETE 2112
Cdd:PHA03307   389 RARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSgePWPGSP 444
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1761-2246 1.33e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.09  E-value: 1.33e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1761 IISPPASPPEMTGQRVPSAPGQESPVPDTESTAPmrNEPTTPSWLAEIPPWVPkdrplpPAPLSPAPAPPTPAPEPHTPV 1840
Cdd:PHA03247  2459 ILGAPFSLSLLLGELFPGAPVYRRPAEARFPFAA--GAAPDPGGGGPPDPDAP------PAPSRLAPAILPDEPVGEPVH 2530

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1841 PFSWglaeydSVVAAVQEGAAELEGGPYSPLGKDYRKAEGEREGEGGAGAP-------DSSSFSPKVP-EAGESLATRDT 1912
Cdd:PHA03247  2531 PRML------TWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPrpsepavTSRARRPDAPpQSARPRAPVDD 2604

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1913 EQTEPEQREPTPYPDERSfqyadiyeQMMLTGLGPACPTREPPLGASGDWPPHLSTKEEAAGCNTSAEKETSSPASPQNL 1992
Cdd:PHA03247  2605 RGDPRGPAPPSPLPPDTH--------APDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQA 2676

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1993 QSDT----------PAFSYASLAGPAVPPRQ-EPDPGPNVEPSITPP---AVPPRAPISLSKDLSPPLNGSTVSCSPDRR 2058
Cdd:PHA03247  2677 SSPPqrprrraarpTVGSLTSLADPPPPPPTpEPAPHALVSATPLPPgpaAARQASPALPAAPAPPAVPAGPATPGGPAR 2756

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2059 TPSPKETgrghwddGTNDSDLEKGAREQPEKETRSPSPHHPMPMGHSSLWPETEAYSSLSSDSHLGSVRPSLDFPASAFG 2138
Cdd:PHA03247  2757 PARPPTT-------AGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLP 2829

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2139 --FSSLQPAPPQLPSPAEPRSAPCGSLAFSGD-------RALALVPGTPTRTRhdeyleVTKAPSLDSSLPQLPSPSSPG 2209
Cdd:PHA03247  2830 ppTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDvrrrppsRSPAAKPAAPARPP------VRRLARPAVSRSTESFALPPD 2903

                          490       500       510
                   ....*....|....*....|....*....|....*..
gi 1939872727 2210 GPllsnlPRPASPALSEGSSSEATTPVISSVAERFPP 2246
Cdd:PHA03247  2904 QP-----ERPPQPQAPPPPQPQPQPPPPPQPQPPPPP 2935
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1986-2559 1.49e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.09  E-value: 1.49e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1986 PASPQNLQSDTPAFSYASLAGPAVPPR--------------QEPDPGPNVEPSITPPA----VPPRAPislskdlSPPLN 2047
Cdd:PHA03247  2506 PDAPPAPSRLAPAILPDEPVGEPVHPRmltwirgleelasdDAGDPPPPLPPAAPPAApdrsVPPPRP-------APRPS 2578

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2048 GSTVScSPDRRTPSPKETGRGHWDDGTNDSDLEKGAREQPEKETRSPSPHHPMPMGHSSLWPETEAYSSLSSDSHLGSVR 2127
Cdd:PHA03247  2579 EPAVT-SRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPA 2657

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2128 P---SLDFPASAFGFSSLQPAPPQLPSPAEPRsAPCGSLAFSGD----------RALALVPGTPTRTRHDEYLEVTKAPS 2194
Cdd:PHA03247  2658 PgrvSRPRRARRLGRAAQASSPPQRPRRRAAR-PTVGSLTSLADpppppptpepAPHALVSATPLPPGPAAARQASPALP 2736

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2195 LDSSLPQLPS-PSSPGGPllsnlPRPASPALSEG--SSSEATTPVISSVAERFPPGLEAAEQSAEGLGSGKESAAHSLWD 2271
Cdd:PHA03247  2737 AAPAPPAVPAgPATPGGP-----ARPARPPTTAGppAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAV 2811

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2272 LTPLSPAPSASLDLAPAPAPAPAPAPAPGLPGDLGDGTLPCRPECT--GELTKKPSPFLSPSGDHEANGPGETSLNPPGf 2349
Cdd:PHA03247  2812 LAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVApgGDVRRRPPSRSPAAKPAAPARPPVRRLARPA- 2890

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2350 vTATAEKEEAEAPHAWERGSWPEGAERSSRPDTLLSSEQPLRPGKSSGGPPCSLSSEVEAGPQGCATD--PRPHCGELSP 2427
Cdd:PHA03247  2891 -VSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGavPQPWLGALVP 2969

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2428 S------FLNPPLPPSTDDSDLSTEEARLAGKGGRRRVGRPGATggpcpMADETPPTSASDsgssqsdsdvppETEECPS 2501
Cdd:PHA03247  2970 GrvavprFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLAL-----HEETDPPPVSLK------------QTLWPPD 3032

                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1939872727 2502 ITAEAALDSDEDGDFLPVDkaggvsgTHHPRPGHDPPPTPLPDPRPSPPRPDVCMADP 2559
Cdd:PHA03247  3033 DTEDSDADSLFDSDSERSD-------LEALDPLPPEPHDPFAHEPDPATPEAGARESP 3083
PTZ00121 PTZ00121
MAEBL; Provisional
 1294-1649 2.32e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.52  E-value: 2.32e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1294 SDSSLTKSPESLSSPAMED-----LAVEWEGKAPGKEKEPELKSETRQQKGQILPEKVAVVEQDLIIHQKDGALDEENKp 1368
Cdd:PTZ00121  1068 QDEGLKPSYKDFDFDAKEDnradeATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEAR- 1146

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1369 gRQQDKTPEQKGRDLDEKDTAAELDKGPEPKEKDLDREDQGQRAGPpaEKDKASEQRDtdLQQTQATEPRDRAQERRDSE 1448
Cdd:PTZ00121  1147 -KAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAE--ELRKAEDARK--AEAARKAEEERKAEEARKAE 1221

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1449 EKDKSLELRD----RTPEEKDRILVQEDRAPEHSIPEPTQTDRAPDRKGTDDKEQKEEA-----SEEKEQVLEQKDWALG 1519
Cdd:PTZ00121  1222 DAKKAEAVKKaeeaKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKAdelkkAEEKKKADEAKKAEEK 1301

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1520 KEGETLDQEARTAEQKDETLKEDKTQGQKSSFVEDKTTTSKET-----VLDQKSAEKADSVEQQDGAALEKTRAlglEES 1594
Cdd:PTZ00121  1302 KKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAaeaakAEAEAAADEAEAAEEKAEAAEKKKEE---AKK 1378

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1939872727 1595 PAEGSKAREQEKKywKEQDVVQGWRETSPTRGEPVGGQKEPVPAWEGKSPEQEVR 1649
Cdd:PTZ00121  1379 KADAAKKKAEEKK--KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 1389-1611 5.29e-05

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 48.94  E-value: 5.29e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1389 AAELDKGPEPKEKDLDREDQGQRAGPP--AEKDKASEQRDTDLQQTQATE--PRDRAQERRDSEEKDkslelrdrTPEEK 1464
Cdd:NF033875    43 AAELDTQPGTTTVQPDNPDPQSGSETPktAVSEEATVQKDTTSQPTKVEEvaSEKNGAEQSSATPND--------TTNAQ 114

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1465 DRILVQEDRAPEHSIPEPtQTDRAPDRKGTDDKEQKEEASeekeqvleqKDWALGKEGETLDQEARTAE-QKDETLKEDK 1543
Cdd:NF033875   115 QPTVGAEKSAQEQPVVSP-ETTNEPLGQPTEVAPAENEAN---------KSTSIPKEFETPDVDKAVDEaKKDPNITVVE 184

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1939872727 1544 TQGQKSSFVEDKTTTSKETVLDQKSAEKADSVEQQdgAALEKTRALGLEESPAE-GSKAREQEKKYWKE 1611
Cdd:NF033875   185 KPAEDLGNVSSKDLAAKEKEVDQLQKEQAKKIAQQ--AAELKAKNEKIAKENAEiAAKNKAEKERYEKE 251
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 1980-2222 7.78e-05

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 48.61  E-value: 7.78e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1980 EKETSSPASPQNLQSDTPAFSYASlagPAVPPRQEPDPGPNVEPSITPPAVPPRAPISLSKDLSPPLNGSTVSCSPdrrt 2059
Cdd:pfam03154  155 ESDSDSSAQQQILQTQPPVLQAQS---GAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAP---- 227

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2060 pspketgrghwddgtnDSDLEKGAREQPEketRSPSPHHPMPMGHSSLWPETEAYSSLSSDSHLGSVRPsldfpasafGF 2139
Cdd:pfam03154  228 ----------------HTLIQQTPTLHPQ---RLPSPHPPLQPMTQPPPPSQVSPQPLPQPSLHGQMPP---------MP 279

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2140 SSLQPAPPQLPSPAEPRSAPCGSLAFSGDralaLVPGTPTRTRHDEYLEVTKAPSLDSSLPQLPSPSSPGGPLLSNLPRP 2219
Cdd:pfam03154  280 HSLQTGPSHMQHPVPPQPFPLTPQSSQSQ----VPPGPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHI 355


                   ...
gi 1939872727 2220 ASP 2222
Cdd:pfam03154  356 KPP 358
ComEC COG2333
DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily ...
 46-149 4.96e-04

DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441904 [Multi-domain]  Cd Length: 253  Bit Score: 44.46  E-value: 4.96e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727   46 GRGDSALF-AVNGFNILVDGGSDRKSCFWKLV-------RHLDRIDSVLLTHIGADNLPGINGLLQR-KVAELEE-EQSQ 115
Cdd:COG2333      9 GQGDAILIrTPDGKTILIDTGPRPSFDAGERVvlpylraLGIRRLDLLVLTHPDADHIGGLAAVLEAfPVGRVLVsGPPD 88

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1939872727  116 GSSSYSDWVKNLISPELGVVFFNVPDKLRLPDAS 149
Cdd:COG2333     89 TSETYERLLEALKEKGIPVRPCRAGDTWQLGGVR 122
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1764-2268 5.52e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.70  E-value: 5.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1764 PPASPPEMTGQRVP-SAPGQESPVPDTESTA------PMRNEPTTPSWLAEIPPWVPKDRPLPPAPlspapapptpapep 1836
Cdd:PHA03247  2556 PPAAPPAAPDRSVPpPRPAPRPSEPAVTSRArrpdapPQSARPRAPVDDRGDPRGPAPPSPLPPDT-------------- 2621

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1837 htpvpfswglaeydsvvaavqegaAELEGGPYSPLGKDYRKAEGEREGEGGAGAPDSSSFSPKVpeageSLATRDTEQTE 1916
Cdd:PHA03247  2622 ------------------------HAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRV-----SRPRRARRLGR 2672

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1917 PEQREPTPYPDERsfqyadiyeqmmltglgPACPTREPPLGASGDWPPHLSTKEEAAGCNTSAEKETSSPASPQNLQSDT 1996
Cdd:PHA03247  2673 AAQASSPPQRPRR-----------------RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL 2735

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1997 PAFSY--ASLAGPAVPPRQEPDPGPNVePSITPPAVPPRAPISLSKDLSPPLNGSTVSCSPDrRTPSPKETGrghwddgt 2074
Cdd:PHA03247  2736 PAAPAppAVPAGPATPGGPARPARPPT-TAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRE-SLPSPWDPA-------- 2805

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2075 nDSDLEKGAREQPEKETRSPSPHHPMPMGHSSLWPETEAYSSLSSDSHLGSVRPSLDFPASAfgfsslqPAPPQLPSPAE 2154
Cdd:PHA03247  2806 -DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRP-------PSRSPAAKPAA 2877

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2155 PRSAPCGSLAFSG----DRALALVPGTPTRTRH----DEYLEVTKAPSLDSSLPQLPSPSSPGGPLLSNL-------PRP 2219
Cdd:PHA03247  2878 PARPPVRRLARPAvsrsTESFALPPDQPERPPQpqapPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTdpagagePSG 2957

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*....
gi 1939872727 2220 ASPALSEGSSSEATTPVISSVAERFPPGLEAAEQSAEGLGSGKESAAHS 2268
Cdd:PHA03247  2958 AVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSS 3006
PTZ00121 PTZ00121
MAEBL; Provisional
 309-649 6.13e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.52  E-value: 6.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  309 KPSKIKHRADSKESLKAAPKTAvSKLAKREEV--LEEGAKEARSELAKELAKTEKKAKEPSEKPPEKPSKSERVRgESSE 386
Cdd:PTZ00121  1491 KAEEAKKKADEAKKAAEAKKKA-DEAKKAEEAkkADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKK-KAEE 1568

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  387 ALKAEKRRL-------IKDKAGKKHLKEKISKLEEKKDKEKKEIKKERKELKKEEGRKEEKkdakkdekrkdtkpEVKKL 459
Cdd:PTZ00121  1569 AKKAEEDKNmalrkaeEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE--------------EEKKK 1634

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  460 SKPDLKPFTPEVRKTLYKAKAPGRVKVDKGRAARGEKElsseprtppaQKGAAppaavsghrELALSSPEDLTQDFEELK 539
Cdd:PTZ00121  1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE----------DKKKA---------EEAKKAEEDEKKAAEALK 1695

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  540 RE-ERGLLAEQRDTGLGEKPLPADATEQGHPSAAIQVTQPSgpvlegEHVEREKEVVPDSPGDKGSTNRGPDSGAEVEKE 618
Cdd:PTZ00121  1696 KEaEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAK------KEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKK 1769

                          330       340       350
                   ....*....|....*....|....*....|....*
gi 1939872727  619 KEtwEERKQREA----ELGPENTAAREESEAEVKE 649
Cdd:PTZ00121  1770 AE--EIRKEKEAvieeELDEEDEKRRMEVDKKIKD 1802
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 1901-2235 2.59e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.62  E-value: 2.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1901 PEAGESLATRDTEQTE-PEQREPTPYPDERSFQyadiyeQMMLTGLGPACPTREPPLGASGDWPPHLSTKEEAAGCNTSA 1979
Cdd:PHA03307   106 PTPPGPSSPDPPPPTPpPASPPPSPAPDLSEML------RPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSP 179

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1980 EKETSSPASPQnlqSDTPAFSYASLAGPAVPPRQEPDPGPNVEPSITPPAVPPRAPISLSKDLSP--------------- 2044
Cdd:PHA03307   180 EETARAPSSPP---AEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSsessgcgwgpenecp 256

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2045 -PLNGSTVSCSPDRRTPSPKETGRGHWDDGTNDSDLEKGAREQPEKETRSPSPHHPMPMGHSSLWPEteaySSLSSDSHL 2123
Cdd:PHA03307   257 lPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRE----SSSSSTSSS 332

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2124 GSVRPSLDFPASAFGFSSLQPAPPQLPSPAEPRSAPCGSLAFSGDRALAlvPGTPTRTRhdeylevTKAPSLDSSLPQLP 2203
Cdd:PHA03307   333 SESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAAS--AGRPTRRR-------ARAAVAGRARRRDA 403

                          330       340       350
                   ....*....|....*....|....*....|..
gi 1939872727 2204 SPSSPGGPllsnlPRPASPALSEGSSSEATTP 2235
Cdd:PHA03307   404 TGRFPAGR-----PRPSPLDAGAASGAFYARY 430
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 1316-1535 5.20e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 42.29  E-value: 5.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1316 EWEGKAPGKEK-EPELKSETRQQKGQILPEKVAVVEQDLIIHQKDGALDEenkpgrQQDKTPEQKGRDLDEKDTAAELDK 1394
Cdd:TIGR00927  680 ESEGEIPAERKgEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDE------GEIETGEEGEEVEDEGEGEAEGKH 753

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1395 GPEPKEKDLDREDQGQRAGPPAEKDKASEQRDTDLQQTQATEPRDRAQERRDSEEKDKSLELRDRTPEEKDRILVQEDRA 1474
Cdd:TIGR00927  754 EVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETG 833

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1939872727 1475 PEHSIPEpTQTDRAPDRKGTD-----------DKEQKEEASEEKEQVLEQKDWALGKEGETLDQEARTAEQK 1535
Cdd:TIGR00927  834 EQELNAE-NQGEAKQDEKGVDggggsdggdseEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQK 904
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 2194-2667 5.57e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 5.57e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2194 SLDSSLPQLPSPSSPGGPLlSNLPRPASPALSEGSSSEATTP--VISSVAERFPPGLEAAEQSAEGLGSGKESAAHSLWD 2271
Cdd:PHA03307    13 AAAEGGEFFPRPPATPGDA-ADDLLSGSQGQLVSDSAELAAVtvVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWS 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2272 LTPLSPAPSASldlapapapapapapaPGLPGDLGDGTLPCRPectgeltkKPSPFLSPSGDHeanGPGETSLNPPGFVT 2351
Cdd:PHA03307    92 LSTLAPASPAR----------------EGSPTPPGPSSPDPPP--------PTPPPASPPPSP---APDLSEMLRPVGSP 144

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2352 ATAEKEEAEAPHAwERGSWPEGAERSSRPDTLLSSEQPLRPGKSSGGPPCSLSSEVEAGPqgcATDPRPHCGELSPSFLN 2431
Cdd:PHA03307   145 GPPPAASPPAAGA-SPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAAS---PRPPRRSSPISASASSP 220

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2432 PPLPPSTDDSDlsteeARLAGKGGRRRVGRPGATGGPCPMADETPPTSASDSGSSQSDSDVPPETEecPSITAEAALDSD 2511
Cdd:PHA03307   221 APAPGRSAADD-----AGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSR--PGPASSSSSPRE 293

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2512 EDGDFLPVDKAGGVSGTHHPRPGHDPPPTPLpdprpspprpdvcmADPEGLSSESGRVERLREKGRPGRRAPGRAKPASP 2591
Cdd:PHA03307   294 RSPSPSPSSPGSGPAPSSPRASSSSSSSRES--------------SSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPP 359

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1939872727 2592 AR--RLDIRGKRSPTPGKGPVDRTSRTVPRPRSTPSQVTSAEEKDGHSPMSKGLVNGLKAGSTAlGSKGGSGPPVYVD 2667
Cdd:PHA03307   360 ADpsSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAAS-GAFYARYPLLTPS 436
PHA03247 PHA03247
large tegument protein UL36; Provisional
 2296-2624 5.82e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 5.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2296 APAPGLPGDLGDGTLPCRPECTGELTKKPSPFLSPSGDHEANGPGETSLNPPgfvtataekEEAEAPHAWERGSWPEGAE 2375
Cdd:PHA03247  2598 PRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPP---------ERPRDDPAPGRVSRPRRAR 2668

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2376 RSSRPDTllSSEQPLRPGKSSGGPPC-SLSSEVEAGPQGCATDPRPHcgelsPSFLNPPLPPSTDDSDLSTEEARLAgkg 2454
Cdd:PHA03247  2669 RLGRAAQ--ASSPPQRPRRRAARPTVgSLTSLADPPPPPPTPEPAPH-----ALVSATPLPPGPAAARQASPALPAA--- 2738

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2455 grrRVGRPGATGGPCPMADETPPTSASDSGSSQSDSDVPPETEECPSITAEAALDSDEDGDFLPV--DKAGGVSGTHHPR 2532
Cdd:PHA03247  2739 ---PAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSpwDPADPPAAVLAPA 2815

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2533 PGHDPPPTPLPDPRPSPPRPDVCMADPEGLSSESGRVERLREKGRP-GRRAPGRAKPASPARRLDIRGKRSPTPgkgPVD 2611
Cdd:PHA03247  2816 AALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDvRRRPPSRSPAAKPAAPARPPVRRLARP---AVS 2892

                          330
                   ....*....|...
gi 1939872727 2612 RTSRTVPRPRSTP 2624
Cdd:PHA03247  2893 RSTESFALPPDQP 2905
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 1321-1507 7.52e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 41.81  E-value: 7.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1321 APGKEKEPELKSETRQQKGQILPEKVAVVEQDLIIHQKDGALDEENKPGRQQDKTPEQKGRDLDEKDTAAELDKGPEPKE 1400
Cdd:PRK12678    76 AARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATE 155

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1401 KDLDREDQGQRAGPPAEKDKASEQRDTDLQQTQATEPRDRAQ---ERRDSEEKDkslELRDRTPEEKDRILVQEDRAPEH 1477
Cdd:PRK12678   156 ARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGrdgDDRDRRDRR---EQGDRREERGRRDGGDRRGRRRR 232

                          170       180       190
                   ....*....|....*....|....*....|
gi 1939872727 1478 SIPEPTQTDRAPDRKGTDDKEQKEEASEEK 1507
Cdd:PRK12678   233 RDRRDARGDDNREDRGDRDGDDGEGRGGRR 262
PTZ00121 PTZ00121
MAEBL; Provisional
 312-714 7.55e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.05  E-value: 7.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  312 KIKHRADSKESLKAAPKTAVSKLAKREEVLEEGAKEARSELAKELAKTEKKAKEPSEKPPEKPSKSERVRGESSEALKAE 391
Cdd:PTZ00121  1167 EEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAE 1246

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  392 KRRlikdkagkkhLKEKISKLEEKKDKEKKEIKKERKELKKEEGRKEEKKDAKKDEKRKDTKPEVKKLSkpDLKPFTPEV 471
Cdd:PTZ00121  1247 EER----------NNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD--EAKKKAEEA 1314

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  472 RKT--LYKAKAPGRVKVDKGRAARGEKELSSEPRTPPAQKGAAPPAAVSGHRELALSSPEDLTQDFEELKREergllAEQ 549
Cdd:PTZ00121  1315 KKAdeAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK-----AEE 1389

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  550 RdtglgEKPLPADATEQGHPSAAIQVTQPSGPVLEGEHVEREKEVV--PDSPGDKGSTNRGPDSGAEVEKEKETWEERKQ 627
Cdd:PTZ00121  1390 K-----KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKkkADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727  628 REAELGPENTAAREESEAEVKEDVIEKAELEEMEETHPSDEEGEETKAESFyqKHTQEALKASpKSREALGGRDLGFQGK 707
Cdd:PTZ00121  1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA--KKAEEAKKAD-EAKKAEEAKKADEAKK 1541


                   ....*..
gi 1939872727  708 APEKETA 714
Cdd:PTZ00121  1542 AEEKKKA 1548
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1765-2279 8.07e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 8.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1765 PASPPEMTGQRVPSAPGQESPVPDTESTAPMRNEPTTPswlaeiPPwvpkdrplppapLSPAPAPPTPAPEPHTPVPFSW 1844
Cdd:PHA03247  2589 PDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDP------PP------------PSPSPAANEPDPHPPPTVPPPE 2650

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1845 GLAEYDSVVAAVQEGAAELEG---GPYSPLGKDYRKAEGER----------EGEGGAGAPDSSSFSPKVPEAGESLATRD 1911
Cdd:PHA03247  2651 RPRDDPAPGRVSRPRRARRLGraaQASSPPQRPRRRAARPTvgsltsladpPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1912 TEQTEPEQREPTPYPDERSFQYADIYEQMMLTGLGPACPTrePPLGASGDwPPHLSTKEEAAGCNTSAEKETSSPASpqn 1991
Cdd:PHA03247  2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPA--PPAAPAAG-PPRRLTRPAVASLSESRESLPSPWDP--- 2804

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 1992 lqSDTPAfsYASLAGPAVPPRQEPDPgpnvePSITPPAVPPRAPISLSKDLSP--PLNGSTVSCSPDRRTPSPKETGrgh 2069
Cdd:PHA03247  2805 --ADPPA--AVLAPAAALPPAASPAG-----PLPPPTSAQPTAPPPPPGPPPPslPLGGSVAPGGDVRRRPPSRSPA--- 2872

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2070 wddgtndSDLEKGAREQPEKETRSPSPHHPMPMGHSSLWPETEAYSSLSSDSHLGSVRPSLDFPASAfgfsslQPAPPQL 2149
Cdd:PHA03247  2873 -------AKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPP------PPPPPRP 2939

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939872727 2150 PSPAEPRSAPCGSLAFSG----DRALALVPGTPTRTRhdeylevTKAPsldSSLPQLPSPSSPGGPLLSN-LPRPASPAL 2224
Cdd:PHA03247  2940 QPPLAPTTDPAGAGEPSGavpqPWLGALVPGRVAVPR-------FRVP---QPAPSREAPASSTPPLTGHsLSRVSSWAS 3009

                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1939872727 2225 SEGSSSEATTPVISSVAERFPPglEAAEQSAEGLGSGKESAAHSLWDLTPLSPAP 2279
Cdd:PHA03247  3010 SLALHEETDPPPVSLKQTLWPP--DDTEDSDADSLFDSDSERSDLEALDPLPPEP 3062
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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