|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
123-677 |
2.74e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.43 E-value: 2.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 123 ERFRTLDEEVERYRAEYNKLRYEYTFLKSE-FEHQKEEFTRVSEEEKMKYKSEVARLEKDKEELHNQLLSVDPTRD---- 197
Cdd:COG1196 213 ERYRELKEELKELEAELLLLKLRELEAELEeLEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAeeye 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 198 -SKRMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQVRQLAEMQATLRSLEAEKQSAKLQAERLEKELQ 276
Cdd:COG1196 293 lLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 277 SSNEQNTCLISKLHRADREISTLASEVKELKHAnKLEITDIKLEAARAKSELERERNKIQSELDGLQSDNEILKSTVEHH 356
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEEL-EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 357 KALLVEKDRELIRKVQAAKE--EGYQKLMVLQDEKLELENRLSDLEKMKVERD----VWRQSEKEQCEEKLR---ASQMA 427
Cdd:COG1196 452 AELEEEEEALLELLAELLEEaaLLEAALAELLEELAEAAARLLLLLEAEADYEgfleGVKAALLLAGLRGLAgavAVLIG 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 428 EEAARRELQSTRLKLQQQIVNTEKAEKEKLENSELKQQISHLQIQVTSLTQSENDLLNSNHMLKDMVERLKQECRNLRSQ 507
Cdd:COG1196 532 VEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 508 AEKAQLDVEKTLEEKQIQWLEEKHKLHER--ITDREEKYNQAKEKLQRAATAQKKRKSLHENKLKRLQEKVEVLEAKKEE 585
Cdd:COG1196 612 DARYYVLGDTLLGRTLVAARLEAALRRAVtlAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 586 LETENQVLNRQNvpfEEYTRLQKRLKDIQRRHNEFRSLILVPNMPPTASISPANFQSAVTVPGAELSFPPHLQEEQHQRE 665
Cdd:COG1196 692 ELELEEALLAEE---EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE 768
|
570
....*....|..
gi 27229249 666 LSLLRKRLEELE 677
Cdd:COG1196 769 LERLEREIEALG 780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
215-591 |
1.79e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 1.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 215 LKSLEAEVAELRAEKENSGAQVENVQRIQvrqlaEMQATLRslEAEKQSAKLQAERLEKELQSSNEQNTCLISKLHRADR 294
Cdd:TIGR02168 188 LDRLEDILNELERQLKSLERQAEKAERYK-----ELKAELR--ELELALLVLRLEELREELEELQEELKEAEEELEELTA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 295 EISTLASEVKELKHAnkleitdikleaaraKSELERERNKIQSELDGLQSDNEILKSTVEHHKALLVEKDRELIRkVQAA 374
Cdd:TIGR02168 261 ELQELEEKLEELRLE---------------VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE-LEAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 375 KEEGYQKLMVLQDEKLELENRLSDLEKmkverdvwrqsEKEQCEEKLRASQMAEEAARRELQSTRlklqqqivntEKAEK 454
Cdd:TIGR02168 325 LEELESKLDELAEELAELEEKLEELKE-----------ELESLEAELEELEAELEELESRLEELE----------EQLET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 455 EKLENSELKQQISHLQIQVTSLTQSENDLlnsnhmlKDMVERLKQECRNLRSQAEKAQLD-VEKTLEEKQiqwlEEKHKL 533
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERLEARLERL-------EDRRERLQQEIEELLKKLEEAELKeLQAELEELE----EELEEL 452
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 27229249 534 HERITDREEKYNQAKEKLQRAATAQKKRKslheNKLKRLQEKVEVLEAKKEELETENQ 591
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAE----RELAQLQARLDSLERLQENLEGFSE 506
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
41-589 |
2.25e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 2.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 41 QALKIEHKRLQEEYVKSQNELKRVLIEKQASQEKFQLLLEDLRGELVEKARDIEKMKLQVLTPQKLELVKAQLQQELEAp 120
Cdd:COG1196 249 EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE- 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 121 MRERFRTLDEEVERYRAEYNKLRYEYTFLKSEFEHQKEEFTRVSEEEKMKYKSEVARLEKDKEELHNQL-LSVDPTRDSK 199
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAeLAAQLEELEE 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 200 RMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQVRQLAEMQATLRSLEAEKQSAKLQAERLEKELQSSN 279
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 280 EQNTcLISKLHRADREISTLASEVKELKHANKLEI----------TDIKLEAARAKSELERERNKIQSELDGLQSDNEIL 349
Cdd:COG1196 488 EAAA-RLLLLLEAEADYEGFLEGVKAALLLAGLRGlagavavligVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYL 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 350 KStvehHKALLVEKDRELIRKVQAAKEEGYQKLMVLQDEKLELENRLSDLEKMKVERD--VWRQSEKEQCEEKLRASQMA 427
Cdd:COG1196 567 KA----AKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDtlLGRTLVAARLEAALRRAVTL 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 428 EEAARRELQSTRLKLQQQIVNTEKAEKEKLENSELKQQISHLQIQVTSLTQSENDLLNSNHMLKDMVERLKQECRNLRSQ 507
Cdd:COG1196 643 AGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 508 AEKAQLDVEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAATAQKKRKSLH------ENKLKRLQEKVEVLEA 581
Cdd:COG1196 723 EEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGpvnllaIEEYEELEERYDFLSE 802
|
....*...
gi 27229249 582 KKEELETE 589
Cdd:COG1196 803 QREDLEEA 810
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
34-624 |
3.75e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 3.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 34 EHHKHNYQALKIEHKRLQ---EEYVKSQNELKRVLIEKQASQEKFQLLLEDLRGELVEKARDIEKMKLQVLTPQKLELVK 110
Cdd:TIGR02168 284 EELQKELYALANEISRLEqqkQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 111 AQLQQELEapmrERFRTLDEEVERYRAEYNKLRYEYTFLKSEFEHQKEEFTRvSEEEKMKYKSEVARLEKDKEELHNQLL 190
Cdd:TIGR02168 364 EAELEELE----SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER-LEDRRERLQQEIEELLKKLEEAELKEL 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 191 SVDPTRDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRiQVRQLAEMQATLRSLEAEKQSAKLQAER 270
Cdd:TIGR02168 439 QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA-RLDSLERLQENLEGFSEGVKALLKNQSG 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 271 LEKELQSSNEQNTC-------------------LISKLHRADREISTLASEVKELKH-------------ANKLEITDIK 318
Cdd:TIGR02168 518 LSGILGVLSELISVdegyeaaieaalggrlqavVVENLNAAKKAIAFLKQNELGRVTflpldsikgteiqGNDREILKNI 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 319 LEAARAKSELERERNKIQSEL----------DGLQSDNEILKSTveHHKALLVEKDRELIR------------------- 369
Cdd:TIGR02168 598 EGFLGVAKDLVKFDPKLRKALsyllggvlvvDDLDNALELAKKL--RPGYRIVTLDGDLVRpggvitggsaktnssiler 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 370 ---------KVQAAKEEGYQKLMVLQDEKLELENRLSDLEKMKVERDVWRQSEKEQCEEKLRASQMAE--EAARRELQST 438
Cdd:TIGR02168 676 rreieeleeKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEqlEERIAQLSKE 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 439 RLKLQQQIvnTEKAEKEKLENSELKQQISHLQIQVTSLTQSENDLLNSNHMLKDMVERLKQECRNLRSQAEKAQlDVEKT 518
Cdd:TIGR02168 756 LTELEAEI--EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE-SLERR 832
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 519 LEEKQIQwLEEKHKLHERITDREEKYNQAKEKLQRAATAQKKRKSLHENKLKRLQEKVEVLEAKKEELETENQVLNRQNV 598
Cdd:TIGR02168 833 IAATERR-LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
650 660
....*....|....*....|....*..
gi 27229249 599 PFE-EYTRLQKRLKDIQRRHNEFRSLI 624
Cdd:TIGR02168 912 ELRrELEELREKLAQLELRLEGLEVRI 938
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
40-619 |
8.12e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 8.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 40 YQALKIEHKRLQ-EEYVKSQNELKRVLIEKQASQEKFQLLLEDLRGELVEKARDIEKMKLQVltpqklelvkAQLQQELE 118
Cdd:COG1196 215 YRELKEELKELEaELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL----------EELELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 119 ApMRERFRTLDEEVERYRAEYNKLRYEYTFLKSEFEHQKEEfTRVSEEEKMKYKSEVARLEKDKEELHNQLLSVDPTRDS 198
Cdd:COG1196 285 E-AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE-LAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 199 --KRMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQ---VRQLAEMQATLRSLEAEKQSAKLQAERLEK 273
Cdd:COG1196 363 aeEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEealLERLERLEEELEELEEALAELEEEEEEEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 274 ELQSSNEQNTCLISKLHRADREISTLASEVKELKHANKLEITDIKLEAARAKSELERERNKIQSELDGLQSDNEILKSTV 353
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 354 EHHKALLVEKDRELIRKVQAAKEEGYQKLMVLQDE---------KLELENRLSDLEKMKVERDVWRQSEKEQCEEKLRAS 424
Cdd:COG1196 523 AGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEvaaaaieylKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVD 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 425 QMAEEAARRELQSTRLkLQQQIVNTEKAEKEKLENSELKQQISHLQIQVTSLTQSENDLLNSNHMLKDMVERLKQECRNL 504
Cdd:COG1196 603 LVASDLREADARYYVL-GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 505 RSQAEKAQLDVEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAATAQKKRKSLHENKLKRLQE---------K 575
Cdd:COG1196 682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEaleelpeppD 761
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 27229249 576 VEVLEAKKEELETENQVLNRQNV-PFEEYTRLQKRLKDIQRRHNE 619
Cdd:COG1196 762 LEELERELERLEREIEALGPVNLlAIEEYEELEERYDFLSEQRED 806
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
59-624 |
1.04e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 1.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 59 NELKRVL--IEKQASQ-EKFQllleDLRGELVEKARDIEKMKLQVLTPQK--LELVKAQLQQELEApMRERFRTLDEEVE 133
Cdd:TIGR02168 196 NELERQLksLERQAEKaERYK----ELKAELRELELALLVLRLEELREELeeLQEELKEAEEELEE-LTAELQELEEKLE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 134 RYRAEYNKLRYEYTFLKSEFEHQKEEFTRVsEEEKMKYKSEVARLEKDKEELHNQLLSVD--PTRDSKRMEQLVREKTHL 211
Cdd:TIGR02168 271 ELRLEVSELEEEIEELQKELYALANEISRL-EQQKQILRERLANLERQLEELEAQLEELEskLDELAEELAELEEKLEEL 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 212 LQKLKSLEAEVAELRAEKENSGAQVENVQ---RIQVRQLAEMQATLRSLEAEKQSAKLQAERLEKELQSSNEQNTCLISK 288
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELESRLEELEeqlETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 289 LHRADR-EISTLASEVKELKHANKLEITDIKLEAARAKSELERERNKIQS---ELDGLQSDNEILKSTVEHHK------- 357
Cdd:TIGR02168 430 LEEAELkELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAaerELAQLQARLDSLERLQENLEgfsegvk 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 358 ---------------------------------------ALLVEKDRELIRKVQAAKEEGYQKLMVL--------QDEKL 390
Cdd:TIGR02168 510 allknqsglsgilgvlselisvdegyeaaieaalggrlqAVVVENLNAAKKAIAFLKQNELGRVTFLpldsikgtEIQGN 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 391 ELENR---------LSDLEKMKVERDVW---------------------------------------------------- 409
Cdd:TIGR02168 590 DREILkniegflgvAKDLVKFDPKLRKAlsyllggvlvvddldnalelakklrpgyrivtldgdlvrpggvitggsaktn 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 410 -----RQSEKEQCEEKLRASQMAEEAARRELQSTRLKLQQQIVNTEKAEKEKLensELKQQISHLQIQVTSLTQSENDLL 484
Cdd:TIGR02168 670 ssileRRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE---ELSRQISALRKDLARLEAEVEQLE 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 485 NSNHMLKDMVERLKQECRNLRSQAEKAQL------DVEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAATAQ 558
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEelaeaeAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 27229249 559 KKRKSLHENKLKRLQEKVEVLEAKKEELETENQVLNRQNVPFEEYTRLQKRLKDIQRRHNEFRSLI 624
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
62-450 |
3.45e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 3.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 62 KRVLIEKQASQEKFQLLLEDLRGELVEKARDIEkmklqvltpqKLELVKAQLQQELEAPMRERfrtldEEVERYRAEYNK 141
Cdd:TIGR02169 155 RRKIIDEIAGVAEFDRKKEKALEELEEVEENIE----------RLDLIIDEKRQQLERLRRER-----EKAERYQALLKE 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 142 LR-YEYTFLKSEFEhqkeeftrVSEEEKMKYKSEVARLEKDKEELHNQLlsvdpTRDSKRMEQLVREKTHLLQKLKSL-E 219
Cdd:TIGR02169 220 KReYEGYELLKEKE--------ALERQKEAIERQLASLEEELEKLTEEI-----SELEKRLEEIEQLLEELNKKIKDLgE 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 220 AEVAELRAEKENSGAQVENVQRIQV---RQLAEMQATLRSLEAEKQSAKLQAERLEKELQSSNEQNTCLISKLHRADREI 296
Cdd:TIGR02169 287 EEQLRVKEKIGELEAEIASLERSIAekeRELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 297 STLASEVKELKHANKlEITDIKLEAARAKSELERERNKIQSELDGLQSDNEILKSTVEHHKALLvEKDRELIRKVQAAKE 376
Cdd:TIGR02169 367 EDLRAELEEVDKEFA-ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAI-AGIEAKINELEEEKE 444
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 27229249 377 EgyqklmvLQDEKLELENRLSDLEKMKVErdvwRQSEKEQCEEKLRASQMAEEAARRELqsTRLKLQQQIVNTE 450
Cdd:TIGR02169 445 D-------KALEIKKQEWKLEQLAADLSK----YEQELYDLKEEYDRVEKELSKLQREL--AEAEAQARASEER 505
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
27-621 |
4.00e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.15 E-value: 4.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 27 IDERVRCEHHKHNYQALKIEHKRLQEEYVKSQnELKRVLIEKQASQEKFQlllEDLRGelVEKARDIEKMKLQVLTPQKL 106
Cdd:PTZ00121 1142 AEEARKAEDAKRVEIARKAEDARKAEEARKAE-DAKKAEAARKAEEVRKA---EELRK--AEDARKAEAARKAEEERKAE 1215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 107 ELVKAQLQQELEAPMRERFRTLDEEVERYRAEYNKLRYEYTFLKSEFEHQKEEFTRVSEEEKMKYKSEVARLEKDKEELH 186
Cdd:PTZ00121 1216 EARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 187 NQLLSVDPTRDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQVRQLAEMQATLRSLEAEK---QS 263
Cdd:PTZ00121 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEkkkEE 1375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 264 AKLQAERLEKELQSSNEQNtclisKLHRADREISTLASEVKELKHANKleitdiKLEAARAKSELERERNKIQSELDGLQ 343
Cdd:PTZ00121 1376 AKKKADAAKKKAEEKKKAD-----EAKKKAEEDKKKADELKKAAAAKK------KADEAKKKAEEKKKADEAKKKAEEAK 1444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 344 SDNEILKSTVEHHKALLVEKDRELIRKVQAAKEEGYQKLMVLQDEKLELENRLSDLEKMKVERDVWRQSEKEQCEEKLRA 423
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 424 SQMAEEAARRELQSTRlKLQQQIVNTEKAEKEKLENSELKQQIShlqiQVTSLTQSENDLLNSNHMLKDMVERLKQECRN 503
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAK-KAEEKKKADELKKAEELKKAEEKKKAE----EAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 504 L-----RSQAEKAQLDVEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAATAQKKRKSLHENKLKRLQEKVEV 578
Cdd:PTZ00121 1600 LyeeekKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 27229249 579 LEAKKEELETENQVLNRQNVPFEEYTRLQKRLKDIQRRHNEFR 621
Cdd:PTZ00121 1680 AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELK 1722
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
43-606 |
5.64e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.52 E-value: 5.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 43 LKIEHKRLQEEYVKSQNELKRVLIEKqaSQEKFQLLLEDLRGELVEKARDIEKMKLQVLTpQKLELVKAQLQ------QE 116
Cdd:TIGR00618 136 LKLDYKTFTRVVLLPQGEFAQFLKAK--SKEKKELLMNLFPLDQYTQLALMEFAKKKSLH-GKAELLTLRSQlltlctPC 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 117 LEAPMRERFRTLDEEVERYRAEYNKLRYEYTFLKSEFEHQKEEFTRVSE-----EEKMKYKSEVARLEKDKEELHNQLLS 191
Cdd:TIGR00618 213 MPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLlkqlrARIEELRAQEAVLEETQERINRARKA 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 192 VDPTRDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQ-VENVQRIQVRQLAEMQATLRSLEAEKQSAKL---- 266
Cdd:TIGR00618 293 APLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQqSSIEEQRRLLQTLHSQEIHIRDAHEVATSIReisc 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 267 QAERLEKELQSSNEQNTCLISKLHRADREISTLASEV-KELKHANKLEITDIKLEAARAKSELERERNKIQSELDGLQSD 345
Cdd:TIGR00618 373 QQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQaTIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQ 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 346 NEILKST--VEHHKALLVEKDRE-----LIRKVQAAKEEGYQKLMVLQDEKLELENRLSDLEKMKVERDVW--RQSEKEQ 416
Cdd:TIGR00618 453 CEKLEKIhlQESAQSLKEREQQLqtkeqIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPgpLTRRMQR 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 417 CEEKLRASQMAEEAARRELQSTRLKLQQqivNTEKAEKEKLENSELKQQISHLQIQVTSLTQSENDLLNSNHMLKDMVER 496
Cdd:TIGR00618 533 GEQTYAQLETSEEDVYHQLTSERKQRAS---LKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDM 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 497 LKQECRNLRSQAEKAQLDVEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAATAQKKRKSLHENKLKRLQEKV 576
Cdd:TIGR00618 610 LACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEK 689
|
570 580 590
....*....|....*....|....*....|
gi 27229249 577 EVLEAKKEELETENQVLNRQNVPFEEYTRL 606
Cdd:TIGR00618 690 EQLTYWKEMLAQCQTLLRELETHIEEYDRE 719
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
29-567 |
1.96e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 1.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 29 ERVRCEHHKHNYQALKIEHKRLQEEYVKSqnELKRVLIEKQASQEKFQLllEDLRGELVEKARDIEKMKLQVLTPQKLEL 108
Cdd:PTZ00121 1258 EEARMAHFARRQAAIKAEEARKADELKKA--EEKKKADEAKKAEEKKKA--DEAKKKAEEAKKADEAKKKAEEAKKKADA 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 109 VKAQLQqelEAPMRERFRTLDEEVERYRAEYNKLRYEYTFLKSEFEHQKEEFTRVSEEEKMKYKSEVARLEKDK---EEL 185
Cdd:PTZ00121 1334 AKKKAE---EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKkkaDEL 1410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 186 HNQLLSVDPTRDSKRMEQLVREKTHLlqKLKSLEAEVAELRAEKENSGAQVENVQRI--------QVRQLAEMQATLRSL 257
Cdd:PTZ00121 1411 KKAAAAKKKADEAKKKAEEKKKADEA--KKKAEEAKKADEAKKKAEEAKKAEEAKKKaeeakkadEAKKKAEEAKKADEA 1488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 258 EAEKQSAKLQAERLEKELQSSNEQNTCLISKLHRADREISTL--ASEVKELKHANKLEITDI-----KLEAARAKSELER 330
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAeeAKKADEAKKAEEKKKADElkkaeELKKAEEKKKAEE 1568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 331 ERNKIQSELDGLQSDNEILKSTVEHHKALLVEKDRELIRKVQAAKEEGYQKLMVLQDEKLELENRLSDLEKMKVERDVWR 410
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 411 QSE--KEQCEEKLRASQMAEEAARRELQSTRLKLQQQivNTEKAEKEKLENSELKQQISHLQIQVTSLTQSENDLLNSNH 488
Cdd:PTZ00121 1649 AEElkKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE--DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 489 MLKDMVERLKQECRNLRSQAEKAQLDVEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEK-LQRAATAQKKRKSLHEN 567
Cdd:PTZ00121 1727 ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEdEKRRMEVDKKIKDIFDN 1806
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
83-399 |
4.95e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 4.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 83 RGELVEKARDIEKMKLQVltpQKLELVKAQLQQELEApMRERFRTLDEEVERYRAEYNKLRYEYTFLKSEFEHQKEEFTR 162
Cdd:TIGR02168 676 RREIEELEEKIEELEEKI---AELEKALAELRKELEE-LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 163 VSEE-EKMKYKSEVARLEKDKEELHNQLLSVDPTRDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEkensGAQVENVQR 241
Cdd:TIGR02168 752 LSKElTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE----AANLRERLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 242 IQVRQLAEMQATLRSLEAEKQSAKLQAERLEKELQSSNEQNTCLISKLHRADREISTLASEVKELKHANKLEITDIKlEA 321
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR-EL 906
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 27229249 322 ARAKSELERERNKIQSELDGLQSDNEILKSTVEHHKALLVEKDRELIRKVQAAKEEGYQKLMVLQDEKLELENRLSDL 399
Cdd:TIGR02168 907 ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
56-415 |
1.36e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 1.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 56 KSQNELKRVliekQASQEKFQLLLEDLRGELVEKARDIEK-MKLQVLTPQKLELVKAQLQQELEApMRERFRTLDEEVER 134
Cdd:TIGR02169 174 KALEELEEV----EENIERLDLIIDEKRQQLERLRREREKaERYQALLKEKREYEGYELLKEKEA-LERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 135 YRAEYNKLRYEYTFLKSEFEHQKEEFTRVSEEEKMKYKSEVARLEKDKEELHNQLlsvdptrdskrmEQLVREKTHLLQK 214
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEI------------ASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 215 LKSLEAEVAELRAEKENSGAQVENVQRiqvrQLAEMQATLRSLEAEKQSAKLQAERLEKELQSSNEQNTCLISKLHRADR 294
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELER----EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 295 EISTLASEVKELKHanklEITDIKLEAARAKSELERERNKIQSELDGLQSDNEILKStvehhKALLVEKDRELIRKVQAA 374
Cdd:TIGR02169 393 KLEKLKREINELKR----ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED-----KALEIKKQEWKLEQLAAD 463
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 27229249 375 KEEGYQKLMVLQDEKLELENRLSDLEK----MKVERDVWRQSEKE 415
Cdd:TIGR02169 464 LSKYEQELYDLKEEYDRVEKELSKLQRelaeAEAQARASEERVRG 508
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
200-596 |
1.47e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 200 RMEQLVREK----THLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQVRQLAEMQATLRSLEAEKQSAKL----QAERL 271
Cdd:pfam15921 268 RIEQLISEHeveiTGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRmyedKIEEL 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 272 EKELQSSNeqntcliSKLHRADREISTLASEVKELKhaNKLEITDIKLEAARAKSELERERNKIQSELDglqSDNEIlks 351
Cdd:pfam15921 348 EKQLVLAN-------SELTEARTERDQFSQESGNLD--DQLQKLLADLHKREKELSLEKEQNKRLWDRD---TGNSI--- 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 352 TVEHHKALLVEKDRELIR---KVQAAKEEGY----QKLMVLQDEKLELENRLSDLEKMKVERDVWRqsekeQCEEKLRAS 424
Cdd:pfam15921 413 TIDHLRRELDDRNMEVQRleaLLKAMKSECQgqmeRQMAAIQGKNESLEKVSSLTAQLESTKEMLR-----KVVEELTAK 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 425 QMAEEAARRELQ--STRLKLQQQIVNTEKAEKEKLENS-ELK-QQISHLQIQVTSL--TQSENDLLNSNHMLKD-MVERL 497
Cdd:pfam15921 488 KMTLESSERTVSdlTASLQEKERAIEATNAEITKLRSRvDLKlQELQHLKNEGDHLrnVQTECEALKLQMAEKDkVIEIL 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 498 KQECRNLRS------------QAEKAQLDVE---KTLEEKQIQWLEEK-----HKLHERITDRE----EKYNQAKEKLQR 553
Cdd:pfam15921 568 RQQIENMTQlvgqhgrtagamQVEKAQLEKEindRRLELQEFKILKDKkdakiRELEARVSDLElekvKLVNAGSERLRA 647
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 27229249 554 AATAQKKRKSL------HENKLKRLQEKVEVLEA----KKEELETENQVLNRQ 596
Cdd:pfam15921 648 VKDIKQERDQLlnevktSRNELNSLSEDYEVLKRnfrnKSEEMETTTNKLKMQ 700
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
52-358 |
1.51e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 1.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 52 EEYVKSQNELKRVLIEKQASQEKFQLLLEDLRGELVEKARDIEkmklqvltpqklelvkaQLQQELEAPMRERFRTLDEE 131
Cdd:TIGR02169 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLE-----------------ELNKKIKDLGEEEQLRVKEK 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 132 VERYRAEYNKLRYEYTFLKSEFEhQKEEFTRVSEEEKMKYKSEVARLEKDKEELHNQLLSVdptrdSKRMEQLVREKTHL 211
Cdd:TIGR02169 296 IGELEAEIASLERSIAEKERELE-DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL-----TEEYAELKEELEDL 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 212 LQKLKSLEAEVAELRAEKENSGAQVENVQRiqvrQLAEMQATLRSLEAEKQSAKLQAERLEKELQSSNEQNTCLISKLHR 291
Cdd:TIGR02169 370 RAELEEVDKEFAETRDELKDYREKLEKLKR----EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED 445
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 27229249 292 ADREISTLASEVKELKhaNKLEITDIKLEAARAK-SELERERNKIQSELDGLQSDNEILKSTVEHHKA 358
Cdd:TIGR02169 446 KALEIKKQEWKLEQLA--ADLSKYEQELYDLKEEyDRVEKELSKLQRELAEAEAQARASEERVRGGRA 511
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
231-587 |
5.96e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 5.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 231 NSGAQVENVQRIQVRQLAEMQATLRSLEAEKQSAKLQAERLEKELqssnEQNTCLISKLHRADREISTLASEVKELKHAN 310
Cdd:TIGR02169 660 RAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRL----DELSQELSDASRKIGEIEKEIEQLEQEEEKL 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 311 KLEITDIKleaaRAKSELERERNKIQSELDGLQSDNEILKSTVEHHKALLVEKDRELIRKVQAAKEEGYQKLmvlQDEKL 390
Cdd:TIGR02169 736 KERLEELE----EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKL---EEEVS 808
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 391 ELENRLSDLEKMKVERDVWRQSEKEQCEEKLR-----ASQMAEEAARRELQSTRL-KLQQQIVNTEKAEKE--------K 456
Cdd:TIGR02169 809 RIEARLREIEQKLNRLTLEKEYLEKEIQELQEqridlKEQIKSIEKEIENLNGKKeELEEELEELEAALRDlesrlgdlK 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 457 LENSELKQQISHLQIQVTSLTQSENDLLNSNHMLKDMVERLKQECRNLRSQAEKAQLDVEKTLEEKQIQwlEEKHKLHER 536
Cdd:TIGR02169 889 KERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQ--AELQRVEEE 966
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 27229249 537 ITDREEKYNQAKEKLQRAataqkkrkslhENKLKRLQEKVEVLEAKKEELE 587
Cdd:TIGR02169 967 IRALEPVNMLAIQEYEEV-----------LKRLDELKEKRAKLEEERKAIL 1006
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
118-624 |
6.93e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.68 E-value: 6.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 118 EAPMRERFRTLDEEVERYRAEYNKLRYEYTFLKSEFEHQKEEFTRVSE--EEKMKYKSEVARLEKDKEELHNQLLSVDPT 195
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEElkEEIEELEKELESLEGSKRKLEEKIRELEER 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 196 RDSKRME-QLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQVR---QLAEMQATLRSLEaEKQSAKLQAERL 271
Cdd:PRK03918 268 IEELKKEiEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRleeEINGIEERIKELE-EKEERLEELKKK 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 272 EKELQSSNEQNTCLISKLHRADREISTLASEVKELKHANKLEITDIKLEAARAKSELERERNKIQSELDGLQSDNEILKS 351
Cdd:PRK03918 347 LKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 352 TV------------------EHHKALLVEKDRELIRKVQAAKEEGYQKLMVLQDEKLELENRLSDLEKMKVERDVWRQSe 413
Cdd:PRK03918 427 AIeelkkakgkcpvcgreltEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQL- 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 414 kEQCEEKLRASQMAEEAArrelqstrlklqqqivNTEKAEKEKLENSELKQQISHLQIQVTSLTQSENDLLNSNHMLKDM 493
Cdd:PRK03918 506 -KELEEKLKKYNLEELEK----------------KAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDEL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 494 VERLKQECRNLRSQAEKAQLDVEKTLEEkqiqwLEEKHKLHERITDREEKYNQAKEKLQRAAT-AQKKRKSLHE--NKLK 570
Cdd:PRK03918 569 EEELAELLKELEELGFESVEELEERLKE-----LEPFYNEYLELKDAEKELEREEKELKKLEEeLDKAFEELAEteKRLE 643
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 27229249 571 RLQEKVEVLEAKKEELETENqVLNRQNVPFEEYTRLQKRLKDIQRRHNEFRSLI 624
Cdd:PRK03918 644 ELRKELEELEKKYSEEEYEE-LREEYLELSRELAGLRAELEELEKRREEIKKTL 696
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
106-588 |
1.08e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.88 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 106 LELVKAQLQQELEAPMRERFRTL-------DEEVERYRAEYNKLRYEYTFLKS---EFEHQKEEFTRVsEEEKMKYKSEV 175
Cdd:PRK02224 189 LDQLKAQIEEKEEKDLHERLNGLeselaelDEEIERYEEQREQARETRDEADEvleEHEERREELETL-EAEIEDLRETI 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 176 ARLEKDKEELHNQLLSVDptrdsKRMEQLVREKTHLLQK--LKSLEAE-VAELRAEKENSGAQVENV---QRIQVRQLAE 249
Cdd:PRK02224 268 AETEREREELAEEVRDLR-----ERLEELEEERDDLLAEagLDDADAEaVEARREELEDRDEELRDRleeCRVAAQAHNE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 250 MQATLR----SLEAEKQSAKLQAERLEKELQSSNEQntcliskLHRADREISTLASEVKELKHAnkLEITDIKLEAARAK 325
Cdd:PRK02224 343 EAESLRedadDLEERAEELREEAAELESELEEAREA-------VEDRREEIEELEEEIEELRER--FGDAPVDLGNAEDF 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 326 SE-LERERNKIQSELDGLQSDNEILKSTVEHHKALL--------------------VEKDRELIRKVQAAKEEgyqklmv 384
Cdd:PRK02224 414 LEeLREERDELREREAELEATLRTARERVEEAEALLeagkcpecgqpvegsphvetIEEDRERVEELEAELED------- 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 385 LQDEKLELENRLSDLEKM-KVERDVWRQSEKEQCEEKLRASQmAEEAARRELQSTRLKLQQQIVNTEKAEKEKlENSELK 463
Cdd:PRK02224 487 LEEEVEEVEERLERAEDLvEAEDRIERLEERREDLEELIAER-RETIEEKRERAEELRERAAELEAEAEEKRE-AAAEAE 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 464 QQISHLQIQVTSLTQSENDLLNSNHMLKDMVERLkQECRNLRSQAEKAQlDVEKTLEEKQIQWLEEKHKLHERITDREEK 543
Cdd:PRK02224 565 EEAEEAREEVAELNSKLAELKERIESLERIRTLL-AAIADAEDEIERLR-EKREALAELNDERRERLAEKRERKRELEAE 642
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 544 YN-----QAKEKLQRAATAQ-----------KKRKSLH------ENKLKRLQ---EKVEVLEAKKEELET 588
Cdd:PRK02224 643 FDearieEAREDKERAEEYLeqveekldelrEERDDLQaeigavENELEELEelrERREALENRVEALEA 712
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
107-344 |
1.29e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 107 ELVKAQLQQELEAPMRErfrtLDEEVERYRAEYNKLRYEYTFLKSEFEHQKEEftrvseeekmKYKSEVARLEKDKEELH 186
Cdd:COG4913 243 ALEDAREQIELLEPIRE----LAERYAAARERLAELEYLRAALRLWFAQRRLE----------LLEAELEELRAELARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 187 NQLLSVDptrdskrmeqlvrekthllQKLKSLEAEVAELRAEKENSGAQvenvqriqvrQLAEMQATLRSLEAEKQSAKL 266
Cdd:COG4913 309 AELERLE-------------------ARLDALREELDELEAQIRGNGGD----------RLEQLEREIERLERELEERER 359
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 27229249 267 QAERLEKELQSSNEQNTCLISKLHRADREISTLASEVKELKHANKLEITdiklEAARAKSELERERNKIQSELDGLQS 344
Cdd:COG4913 360 RRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALA----EAEAALRDLRRELRELEAEIASLER 433
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
301-587 |
1.40e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 301 SEVKELKHANKLEITDIKLEAARAKSELERERNKIQSElDGLQSDNEILKSTVEHHKALLVEKDRELIRKVQaakEEGYQ 380
Cdd:pfam17380 285 SERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAE-KARQAEMDRQAAIYAEQERMAMERERELERIRQ---EERKR 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 381 KLMVLQDEKLELE-NRLSDLEKMKVERDvwRQSEKEQCE-EKLRASQMAEEAARRELQSTRLKLQQQIVNTEKAEKEKLE 458
Cdd:pfam17380 361 ELERIRQEEIAMEiSRMRELERLQMERQ--QKNERVRQElEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVR 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 459 NSE---------LKQQISHLQIQVTSLTQSENDLlnsnhmlKDMVERLKQECRNLRSQAEKAQLDVEKTLEEKQIQWLEE 529
Cdd:pfam17380 439 RLEeeraremerVRLEEQERQQQVERLRQQEEER-------KRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEE 511
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 27229249 530 KHKLHERITDREEKYNQAKEKLQRAATAQKKRKSLHENKLKRLQEKVEVLEAKKEELE 587
Cdd:pfam17380 512 ERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLE 569
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
128-573 |
1.99e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 128 LDEEVERYRAEYNKLRYEYTFLKSEFEHQKEE---FTRVSEEEKMKYKSEVARLEKDKEELHNQLLSVDPTRDS-KRMEQ 203
Cdd:pfam15921 417 LRRELDDRNMEVQRLEALLKAMKSECQGQMERqmaAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTlESSER 496
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 204 LVREKTHLLQ-KLKSLEAEVAELRAEKENSGAQVENVQriqvrQLAEMQATLRSLEAEKQSAKLQAERLEKELQSSNEQN 282
Cdd:pfam15921 497 TVSDLTASLQeKERAIEATNAEITKLRSRVDLKLQELQ-----HLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQI 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 283 TCLISKLHRADREISTLASEVKELKHanklEITDIKLEAARAKSELERERNKIQsELDGLQSDNEIlkstvehHKALLVE 362
Cdd:pfam15921 572 ENMTQLVGQHGRTAGAMQVEKAQLEK----EINDRRLELQEFKILKDKKDAKIR-ELEARVSDLEL-------EKVKLVN 639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 363 KDRELIRKVQAAKEEGYQKLMVLQDEKLELENRLSDLEKMKVERdvwrQSEKEQCEEKLRASQMAEEAARRELQSTRLKL 442
Cdd:pfam15921 640 AGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF----RNKSEEMETTTNKLKMQLKSAQSELEQTRNTL 715
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 443 QQQIVNTEKAEKEKL----ENSELKQQISHLQIQVTSLTQSENDLLNSNHMLKDMVERLKQECRNLRSqaEKAQLDVEKT 518
Cdd:pfam15921 716 KSMEGSDGHAMKVAMgmqkQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVAT--EKNKMAGELE 793
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 27229249 519 LEEKQIQWLEEKHKLHERITDREE-KYNQAKEKLQRAATAQKKRKSLHENKLKRLQ 573
Cdd:pfam15921 794 VLRSQERRLKEKVANMEVALDKASlQFAECQDIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
245-460 |
2.57e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 245 RQLAEMQATLRSLEAEKQSAKLQAERLEKELQSSNEQNTCLISKLHRADREISTLASEVKELkhanKLEITDIKLEAARA 324
Cdd:COG4942 34 QEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL----RAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 325 KSELERERNKIQSELDGLQSDNEILKSTVEHHKAlLVEKDRELIRKVQAAKEEGYQKLMVLQDEKLELENRLSDLEKMKV 404
Cdd:COG4942 110 LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKY-LAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERA 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 27229249 405 ERDVwRQSEKEQCEEKLRASQMAEEAARRELQSTRLKLQQQIVNTEKAEKEKLENS 460
Cdd:COG4942 189 ALEA-LKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
196-623 |
2.74e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 2.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 196 RDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQVRQLAEMQATLRSLEAEKQ----------SAK 265
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKeleelkeeieELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 266 LQAERLEKELQSSNEQNTCLISKLHRADREISTLASEVKELKHANKLEITDIKLEAAR-----AKSELERERNKIQSELD 340
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYeeyldELREIEKRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 341 GLQSDNEILKSTVEHHKALLvEKDRELIRKVQAAKE--EGYQKLMVLQDEKLELENRLSDLEKMKVERDVWR-QSEKEQC 417
Cdd:PRK03918 325 GIEERIKELEEKEERLEELK-KKLKELEKRLEELEErhELYEEAKAKKEELERLKKRLTGLTPEKLEKELEElEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 418 EEKL-----RASQMAEEAARRELQSTRLKLQQQIVNTEKAEKEKLENSELKQqishlqiqvtSLTQSENDLLNSNHMLKD 492
Cdd:PRK03918 404 EEEIskitaRIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLE----------EYTAELKRIEKELKEIEE 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 493 MVERLKQECRNLRSQ-AEKAQLDVEKTLEEkQIQWLEEKHKLHErITDREEKYNQAKEKLQRAATAQKKRKSLHE--NKL 569
Cdd:PRK03918 474 KERKLRKELRELEKVlKKESELIKLKELAE-QLKELEEKLKKYN-LEELEKKAEEYEKLKEKLIKLKGEIKSLKKelEKL 551
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 27229249 570 KRLQEKVEVLEAKKEELETENQVLNRQ--NVPFEEYTRLQKRLKDIQRRHNEFRSL 623
Cdd:PRK03918 552 EELKKKLAELEKKLDELEEELAELLKEleELGFESVEELEERLKELEPFYNEYLEL 607
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
152-601 |
3.41e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 47.04 E-value: 3.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 152 EFEHQKEEFTRVSEEEKMKYKSEVARLEKDKEELHNQL-LSVDPTRDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEKE 230
Cdd:pfam05557 6 ESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLdRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 231 NSGAQVENVQRIQVRQLAEMQATL----RSLEAEKQSAKLQAERLEKELQSSNEQNTCLISKLHRADREISTLASEVKEL 306
Cdd:pfam05557 86 EALNKKLNEKESQLADAREVISCLknelSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 307 KHANK----LEI-----TDIKLEAARAKSELEReRNKIQSELDGLQSDNEILKSTVEhHKALLVEKDRELIRKVQaaKEE 377
Cdd:pfam05557 166 AEAEQrikeLEFeiqsqEQDSEIVKNSKSELAR-IPELEKELERLREHNKHLNENIE-NKLLLKEEVEDLKRKLE--REE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 378 GYQ-KLMVLQDEKLELENRLSDLEK--------MKVERDVWRQSEKEQCEEK-LRASQMAEEAARRELQSTRLKLQQQIV 447
Cdd:pfam05557 242 KYReEAATLELEKEKLEQELQSWVKlaqdtglnLRSPEDLSRRIEQLQQREIvLKEENSSLTSSARQLEKARRELEQELA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 448 N-TEKAEKEKLENSELKQQISHLQIQVTSLTQsENDLLNSnhMLKDMVERLKQEcrNLRSQAEKAQLDVEKTLEEKQIQW 526
Cdd:pfam05557 322 QyLKKIEDLNKKLKRHKALVRRLQRRVLLLTK-ERDGYRA--ILESYDKELTMS--NYSPQLLERIEEAEDMTQKMQAHN 396
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 27229249 527 LEEKHKLhERITDREEKYNQAKEKLQRAATAQKKRKSLHENKLKRlqEKVEVLEAKKEELETENQVLNRQNVPFE 601
Cdd:pfam05557 397 EEMEAQL-SVAEEELGGYKQQAQTLERELQALRQQESLADPSYSK--EEVDSLRRKLETLELERQRLREQKNELE 468
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
330-621 |
3.48e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 3.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 330 RERNKIQSELDGL-QSDNEILKSTVEhhkallVEKDRELIRKVQAAKEEGYQKLMVLQDEKLELEnRLSDLEKMKVERDV 408
Cdd:TIGR02169 153 VERRKIIDEIAGVaEFDRKKEKALEE------LEEVEENIERLDLIIDEKRQQLERLRREREKAE-RYQALLKEKREYEG 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 409 W-RQSEKEQCEEKLRASQMAEEAARRELQSTrlklqqqivnTEKAEKEKLENSELKQQISHLQIQVTSLTQSENdllnsn 487
Cdd:TIGR02169 226 YeLLKEKEALERQKEAIERQLASLEEELEKL----------TEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ------ 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 488 HMLKDMVERLKQECRNLRSQAEKAQLDVEKtLEEKQIQWLEEKHKLHERItdreekynqakEKLQRAATAQKKRKSLHEN 567
Cdd:TIGR02169 290 LRVKEKIGELEAEIASLERSIAEKERELED-AEERLAKLEAEIDKLLAEI-----------EELEREIEEERKRRDKLTE 357
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 27229249 568 KLKRLQEKVEVLEAKKEELETENQVLnrqnvpFEEYTRLQKRLKDIQRRHNEFR 621
Cdd:TIGR02169 358 EYAELKEELEDLRAELEEVDKEFAET------RDELKDYREKLEKLKREINELK 405
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
174-618 |
3.66e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 3.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 174 EVARLEKDKEELHNQLLSVDPTRDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQR----IQVRQLAE 249
Cdd:COG4913 263 RYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAqirgNGGDRLEQ 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 250 MQATLRSLEAEKQSAKLQAERLEKELQSSNEQNTCLISKLHRADREISTLASEVKELKHANKLEITdiklEAARAKSELE 329
Cdd:COG4913 343 LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALA----EAEAALRDLR 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 330 RERNKIQSELDGLQSdneiLKSTVEHH---------KALLVEKDR-----ELIrKVQAAKE------EGY---QKLMVLQ 386
Cdd:COG4913 419 RELRELEAEIASLER----RKSNIPARllalrdalaEALGLDEAElpfvgELI-EVRPEEErwrgaiERVlggFALTLLV 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 387 DEK--------------------LELENRLSDLEKMKVERD--------------VW------RQSEKEQCE--EKLR-- 422
Cdd:COG4913 494 PPEhyaaalrwvnrlhlrgrlvyERVRTGLPDPERPRLDPDslagkldfkphpfrAWleaelgRRFDYVCVDspEELRrh 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 423 ------ASQMAEEAARRELQSTRLKLQQQIV---NTEKAEKEKLENSELKQQISHLQIQVTSLTQSENDLlnsnhmlkdm 493
Cdd:COG4913 574 praitrAGQVKGNGTRHEKDDRRRIRSRYVLgfdNRAKLAALEAELAELEEELAEAEERLEALEAELDAL---------- 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 494 vERLKQECRNLRSQAEkAQLDVEKTLE-----EKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAATAQKKRKSLHENK 568
Cdd:COG4913 644 -QERREALQRLAEYSW-DEIDVASAEReiaelEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKE 721
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 27229249 569 LKRLQEKVEVLEAKKEELETENQV------------LNRQNVPFEEYTRLQKRLKDIQRRHN 618
Cdd:COG4913 722 LEQAEEELDELQDRLEAAEDLARLelralleerfaaALGDAVERELRENLEERIDALRARLN 783
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
183-314 |
4.21e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.77 E-value: 4.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 183 EELHNQLLSVDPTRDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEkensgaqvenVQRIQvRQLAEMQATLRSLEAEKQ 262
Cdd:COG2433 383 EELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAE----------VEELE-AELEEKDERIERLERELS 451
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 27229249 263 SAKLQAE---RLEKELQSSNEQNTCLISKLHRADREISTLASEVKELKHANKLEI 314
Cdd:COG2433 452 EARSEERreiRKDREISRLDREIERLERELEEERERIEELKRKLERLKELWKLEH 506
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
128-618 |
4.79e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.96 E-value: 4.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 128 LDEEVERYRAEYNKLRYEYTFLKSEFEHQKEEFTRVSEEEKMKYKSEVARLEKDKEELHNQLLSVDPTRDSKRMEQLVRE 207
Cdd:TIGR00606 575 LEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQ 654
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 208 KTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQvrqlAEMQATLRSLEAEKQSAKLQAERLEKELQSSNEQNTCLIS 287
Cdd:TIGR00606 655 RAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTE----AELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLG 730
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 288 KLHRADREISTLASEVKELKHANKLEITDIkleaARAKSELERERNKIQSELDGLQSDNEILKSTVEHHKALLVEKDREL 367
Cdd:TIGR00606 731 LAPGRQSIIDLKEKEIPELRNKLQKVNRDI----QRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVER 806
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 368 IRKVQAAKEEGYQKLMVLQDEKLELENRLSDLEKMKVERDVWRQSEKEQCEEKLRASQMAEEAARRELQSTRlKLQQQIV 447
Cdd:TIGR00606 807 KIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT-NLQRRQQ 885
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 448 NTEKAEKEKLENSELKQQISHLQIQVTSLTQSENDLLNSNHML---------------KDMVERLKQECRNLRSQAEKAQ 512
Cdd:TIGR00606 886 FEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELissketsnkkaqdkvNDIKEKVKNIHGYMKDIENKIQ 965
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 513 LDVEKTLEEKQIQWLEEKHKLHERiTDREEKYNQAKEKLQRAATAQKKRKSLHENKLKRLQEKVEVLEAKKEELETENQV 592
Cdd:TIGR00606 966 DGKDDYLKQKETELNTVNAQLEEC-EKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEM 1044
|
490 500
....*....|....*....|....*..
gi 27229249 593 LNRQNVPF-EEYTRLQKRLKDIQRRHN 618
Cdd:TIGR00606 1045 GQMQVLQMkQEHQKLEENIDLIKRNHV 1071
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
213-399 |
5.14e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 5.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 213 QKLKSLEAEVAELRAEKENSGAQVENVQRIQvRQLAEMQATLRSLEaEKQSAKLQAERLEKELQSSNEQntclISKLHRA 292
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEAEL-DALQERREALQRLA-EYSWDEIDVASAEREIAELEAE----LERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 293 DREISTLASEVKELKhANKLEITDIKLEAARAKSELERERNKIQSELDGLQSDNEILKSTVEHHKALLVEK--DRELIRK 370
Cdd:COG4913 684 SDDLAALEEQLEELE-AELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEErfAAALGDA 762
|
170 180 190
....*....|....*....|....*....|
gi 27229249 371 VQAAKEEGYQK-LMVLQDEKLELENRLSDL 399
Cdd:COG4913 763 VERELRENLEErIDALRARLNRAEEELERA 792
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
116-278 |
7.08e-05 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 45.52 E-value: 7.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 116 ELEAPMRERFRtLDEEVERYRAEYNKLRYEYtflkSEFEHQKEEFTRVSEEEKMKYKSEVARLEKDKEELHNQLLSVDPT 195
Cdd:pfam09787 48 ELEELRQERDL-LREEIQKLRGQIQQLRTEL----QELEAQQQEEAESSREQLQELEEQLATERSARREAEAELERLQEE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 196 RDSKRmEQLVREKTHLLQKLKSLEAEVAELRAEKEN------SGAQVENVQRIQVRQLAEMQATLRSLEAEKQSAKLQAE 269
Cdd:pfam09787 123 LRYLE-EELRRSKATLQSRIKDREAEIEKLRNQLTSksqsssSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLE 201
|
....*....
gi 27229249 270 RLEKELQSS 278
Cdd:pfam09787 202 RMEQQIKEL 210
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
66-371 |
8.57e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 8.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 66 IEKQASQEKFQLL-LEDLRGELVEKARDIEKMKlqvltpqKLELVKAQLQQELEapmreRFRTLDEEVERYRAEYNKlry 144
Cdd:pfam17380 284 VSERQQQEKFEKMeQERLRQEKEEKAREVERRR-------KLEEAEKARQAEMD-----RQAAIYAEQERMAMERER--- 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 145 eyTFLKSEFEHQKEEFTRVSEEEKMKYKSEVARLEKDKEELHNQLLSVDPTRDSKRMEQLVREKTHllQKLKSLEAEVAE 224
Cdd:pfam17380 349 --ELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQ--RKIQQQKVEMEQ 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 225 LRAEKENsgAQVENVQRIQVRQLAEMQAT-------------LRSLEAEKQSAKLQAERLEKELQSSNEQNTCLISKLHR 291
Cdd:pfam17380 425 IRAEQEE--ARQREVRRLEEERAREMERVrleeqerqqqverLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 292 ADREiSTLASEVKELKHANKLEITDIKLEAARAKSELERERNKIQSELDGLQSDNEILKSTVEHHKALLVEKDRELIRKV 371
Cdd:pfam17380 503 ERKQ-AMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQI 581
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
293-615 |
1.09e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 293 DREISTLASEVKELKHanKLEITDIKLEAARAKSE-LERERNKIQsELDGLQSDNEILKSTVEHHKALLVEKDRELIRKV 371
Cdd:TIGR02169 169 DRKKEKALEELEEVEE--NIERLDLIIDEKRQQLErLRREREKAE-RYQALLKEKREYEGYELLKEKEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 372 QAAKEEGYQKLMVLQDEK-LELENRLSDLEKmkVERDVWRQSEKEQCE-----EKLRASQMAEEAARRELQSTRLKLQQQ 445
Cdd:TIGR02169 246 LASLEEELEKLTEEISELeKRLEEIEQLLEE--LNKKIKDLGEEEQLRvkekiGELEAEIASLERSIAEKERELEDAEER 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 446 IVNTE-KAEKEKLENSELKQQISHLQIQVTSLTQSENDLLNSNHMLKDMVERLKQECRNLRSQAEKAQLDVEKTLEEKQi 524
Cdd:TIGR02169 324 LAKLEaEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN- 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 525 QWLEEKHKLHERITDREEKYNQAKEKLQRAATAQKKRKSLHENKLKRLQEKVEVLEAKKEELETENQVLNRQNvpfEEYT 604
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK---EEYD 479
|
330
....*....|.
gi 27229249 605 RLQKRLKDIQR 615
Cdd:TIGR02169 480 RVEKELSKLQR 490
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
86-570 |
1.16e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.60 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 86 LVEKARDIEKM--KLQVLTPQKLELVKAQLQQELEAPMRERFRTLDEEVERYRAEYNKLRYEYTFLKSEFEHQKEEFTRV 163
Cdd:pfam12128 366 LTGKHQDVTAKynRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSR 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 164 SEEEKMKYKSEVArlekDKEELHNQLLSVdptrdskrmEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQ 243
Cdd:pfam12128 446 LGELKLRLNQATA----TPELLLQLENFD---------ERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQAS 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 244 VRQLAEMQATLRSLEAEKQSAKLQAERLEKELQSSNEQNTCLISK--LHRADREISTLAS-------------EVKELKH 308
Cdd:pfam12128 513 RRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPelLHRTDLDPEVWDGsvggelnlygvklDLKRIDV 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 309 ANKLEITD-IKLEAARAKSELERERNKIQ---SELDGLQSDNEILKSTVEHHKALLVEKDRELIRKVQAAKEEGYQKLMV 384
Cdd:pfam12128 593 PEWAASEEeLRERLDKAEEALQSAREKQAaaeEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKA 672
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 385 LQDEKLELENRLSDLEKMKVERDVWRQSEKEQCEEKLRASQMAEEAARRELQSTRLKLQQQIvnteKAEKEKLEnSELKQ 464
Cdd:pfam12128 673 LAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALL----KAAIAARR-SGAKA 747
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 465 QISHLQiqvtslTQSENDlLNSNHMLKDMVERLKQECRNLRSQAEKAQLDVEKTLEEK---QIQWLEEKHKLHERITDRE 541
Cdd:pfam12128 748 ELKALE------TWYKRD-LASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFdwyQETWLQRRPRLATQLSNIE 820
|
490 500
....*....|....*....|....*....
gi 27229249 542 EKYNQAKEKLQRAATAQKKRKSLHENKLK 570
Cdd:pfam12128 821 RAISELQQQLARLIADTKLRRAKLEMERK 849
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
414-689 |
1.82e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 414 KEQCEEKLRASQMA---EEAARRELQSTRLKLQQQivnTEKAEKEKlensELKQQISHLQIQVtsLTQSENDLLNSNHML 490
Cdd:TIGR02168 174 RKETERKLERTRENldrLEDILNELERQLKSLERQ---AEKAERYK----ELKAELRELELAL--LVLRLEELREELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 491 KDMVERLKQECRNLRSQAEKAQLDVEkTLEEkqiqwleEKHKLHERITDREEKYNQAKEKLQRAataqKKRKSLHENKLK 570
Cdd:TIGR02168 245 QEELKEAEEELEELTAELQELEEKLE-ELRL-------EVSELEEEIEELQKELYALANEISRL----EQQKQILRERLA 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 571 RLQEKVEVLEAKKEELETENQVLNrqnvpfEEYTRLQKRLKDIQRRHNEFRSLILVPNMPPTASISPANFQSAVTVPGAE 650
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELA------EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
|
250 260 270
....*....|....*....|....*....|....*....
gi 27229249 651 LSFPPHLQEEQHQRELSLLRKRLEELETTQRKQLEELGS 689
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
87-522 |
1.87e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 87 VEKARDIEKMKLQVLTPQKLELVKAQLQ-QELEAPMRERFRTldeeVERYRAEYNKLRYEYTFLKSEFEHQK--EEFTRV 163
Cdd:pfam15921 470 LESTKEMLRKVVEELTAKKMTLESSERTvSDLTASLQEKERA----IEATNAEITKLRSRVDLKLQELQHLKneGDHLRN 545
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 164 SEEEKMKYKSEVARLEKDKEELHNQLLSVDPT--RDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVEnvqr 241
Cdd:pfam15921 546 VQTECEALKLQMAEKDKVIEILRQQIENMTQLvgQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIR---- 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 242 iqvrqlaEMQATLRSLEAEK-QSAKLQAERLeKELQSSNEQNTCLISKLHRADREISTLASEVKELKH-----ANKLEIT 315
Cdd:pfam15921 622 -------ELEARVSDLELEKvKLVNAGSERL-RAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRnfrnkSEEMETT 693
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 316 --DIKLEAARAKSELERERNKIQSeLDGlqSDNEILKSTVEHHKALLVEKDR-----ELIRKVQAAKEEGYQKLMVLQDE 388
Cdd:pfam15921 694 tnKLKMQLKSAQSELEQTRNTLKS-MEG--SDGHAMKVAMGMQKQITAKRGQidalqSKIQFLEEAMTNANKEKHFLKEE 770
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 389 KLELENRLSDL----EKMKVERDVWRQSEKeQCEEKLRASQMAEEAA------------RRELQSTRLKLQQQIVNTEKA 452
Cdd:pfam15921 771 KNKLSQELSTVatekNKMAGELEVLRSQER-RLKEKVANMEVALDKAslqfaecqdiiqRQEQESVRLKLQHTLDVKELQ 849
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 453 EKEKLENSELKQQI--------SHLQIQVTSLTQS--ENDLLNSNHMLKDMVERLKQECRNLRSQAEKAQLDVEKTLEEK 522
Cdd:pfam15921 850 GPGYTSNSSMKPRLlqpasftrTHSNVPSSQSTASflSHHSRKTNALKEDPTRDLKQLLQELRSVINEEPTVQLSKAEDK 929
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
82-220 |
3.00e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.08 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 82 LRGELVEKARDIEKMKLQVLTPQKLELVKAQLQQELEaPMRERFRTLDEEVERYRAEYNKLRYEYTFLKSEFEHQKEEFT 161
Cdd:COG2433 373 IRGLSIEEALEELIEKELPEEEPEAEREKEHEERELT-EEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELS 451
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 27229249 162 RVSEEE--KMKYKSEVARLEKDKEELHNQLLSVDptrdsKRMEQLvREKTHLLQKLKSLEA 220
Cdd:COG2433 452 EARSEErrEIRKDREISRLDREIERLERELEEER-----ERIEEL-KRKLERLKELWKLEH 506
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
246-482 |
3.14e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 3.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 246 QLAEMQATLRSLEAEKQSAKLQAERLEKELQSSNEQntcliskLHRADREISTLASEVKELKHanklEITDIKLEAARAK 325
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEE-------YNELQAELEALQAEIDKLQA----EIAEAEAEIEERR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 326 SELERERNKIQSELDGLQSDNEILKST-----VEHHKAL--LVEKDRELIRKVQAAKEEGYQKLMVLQDEKLELENRLSD 398
Cdd:COG3883 86 EELGERARALYRSGGSVSYLDVLLGSEsfsdfLDRLSALskIADADADLLEELKADKAELEAKKAELEAKLAELEALKAE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 399 LEKMKVERDVwRQSEKEQCEEKLRASQMAEEAARRELQSTRLKLQQQIVNTEKAEKEKLENSELKQQISHLQIQVTSLTQ 478
Cdd:COG3883 166 LEAAKAELEA-QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
....
gi 27229249 479 SEND 482
Cdd:COG3883 245 SAAG 248
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
318-620 |
4.04e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 4.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 318 KLEAARAK-SELERERNKIQSELDGLQSDNEILKSTVEHHKALLvEKDRELIRKVQAAKEegyqkLMVLQDEKLELENRL 396
Cdd:COG4913 611 KLAALEAElAELEEELAEAEERLEALEAELDALQERREALQRLA-EYSWDEIDVASAERE-----IAELEAELERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 397 SDLEKMKVERDVWRQsEKEQCEEKLRASQMAEEAARRELQSTRLKLQQqivntEKAEKEKLENSELKQQISHLQIQVTSL 476
Cdd:COG4913 685 DDLAALEEQLEELEA-ELEELEEELDELKGEIGRLEKELEQAEEELDE-----LQDRLEAAEDLARLELRALLEERFAAA 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 477 TQSENdllnsnhmLKDMVERLKQECRNLRSQAEKAQLDVEKTLEEKQIQW-------------LEEKHKLHERITDRE-- 541
Cdd:COG4913 759 LGDAV--------ERELRENLEERIDALRARLNRAEEELERAMRAFNREWpaetadldadlesLPEYLALLDRLEEDGlp 830
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 542 EKYNQAKEKLQRAATaqkkrkslheNKLKRLQEKVEV-LEAKKEELETENQVLNR-------------QNVPFEEYTRLQ 607
Cdd:COG4913 831 EYEERFKELLNENSI----------EFVADLLSKLRRaIREIKERIDPLNDSLKRipfgpgrylrleaRPRPDPEVREFR 900
|
330
....*....|...
gi 27229249 608 KRLKDIQRRHNEF 620
Cdd:COG4913 901 QELRAVTSGASLF 913
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
332-611 |
5.04e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.53 E-value: 5.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 332 RNKIQSELDGLQSDNEILKSTVEHHKALLVEKDRELIRKVQAAKEEGyQKLMVLQDEKLELENRLSDLEKMKVERD---- 407
Cdd:COG5022 767 ALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYR-SYLACIIKLQKTIKREKKLRETEEVEFSlkae 845
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 408 -----VWRQSE-KEQCEEKLRASQMAEEAARRELQSTRLKLQQQIVntEKAEKEKLENSELKQQISHLQIQVTSLTQSEN 481
Cdd:COG5022 846 vliqkFGRSLKaKKRFSLLKKETIYLQSAQRVELAERQLQELKIDV--KSISSLKLVNLELESEIIELKKSLSSDLIENL 923
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 482 DLLNsnhmlkdmvERLKQECRNLRSQAEKAQLDVEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAATAQKKR 561
Cdd:COG5022 924 EFKT---------ELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSEL 994
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 27229249 562 KSlHENKLKRLQEKVEVLEAKKEELETENQVLNR----QNVPFEEYTRLQKRLK 611
Cdd:COG5022 995 KN-FKKELAELSKQYGALQESTKQLKELPVEVAElqsaSKIISSESTELSILKP 1047
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
165-376 |
5.49e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 5.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 165 EEEKMKYKSEVARLEKDKEELHNQLLSVDPTRdskrmeqlvrEKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQriqv 244
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKNGLVDLSE----------EAKLLLQQLSELESQLAEARAELAEAEARLAALR---- 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 245 RQLAEMQATLRSLEAEKQSAKLQAERLEKELQSSNEQntcliSKLHRADREISTLASEVKELKHAnkleitdIKLEAARA 324
Cdd:COG3206 247 AQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELS-----ARYTPNHPDVIALRAQIAALRAQ-------LQQEAQRI 314
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 27229249 325 KSELERERNKIQSELDGLQSDNEILKSTVEHHKALLVEkDRELIRKVQAAKE 376
Cdd:COG3206 315 LASLEAELEALQAREASLQAQLAQLEARLAELPELEAE-LRRLEREVEVARE 365
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
106-558 |
5.81e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 5.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 106 LELVKAQLQQELEAPMRERFRTLDEEVERYRAEYNKLRYEYTFLKSEFEHQKEEFTRVS--EEEKMKYKSEVARLEKDKE 183
Cdd:COG4717 40 LAFIRAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEelEEELEELEAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 184 ELHNQLLSVDPTRDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQVRQLAEMQAtlrSLEAEKQS 263
Cdd:COG4717 120 KLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSL---ATEEELQD 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 264 AKLQAERLEKELQSSNEQNTCLISKLHRADREISTLASEVKELKHANKLEITDIKLEAARAKSELERErnkIQSELDGLQ 343
Cdd:COG4717 197 LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGL---GGSLLSLIL 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 344 SDNEILKSTVehhkALLVEKDRELIRKVQAAKEEGYQKLMVLQDEKLELENRLSDLEKMKVERDVWRQSEKEQCEEKLRA 423
Cdd:COG4717 274 TIAGVLFLVL----GLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEEL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 424 SQMAEEAARRELQSTRLKLQQQIVNT------------EKAEKEKLENSELKQQISHLQIQVTSLTQSENDLLNSN--HM 489
Cdd:COG4717 350 QELLREAEELEEELQLEELEQEIAALlaeagvedeeelRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALdeEE 429
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 27229249 490 LKDMVERLKQECRNLRSQAEKAQLDVEKTleEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAATAQ 558
Cdd:COG4717 430 LEEELEELEEELEELEEELEELREELAEL--EAELEQLEEDGELAELLQELEELKAELRELAEEWAALK 496
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
372-589 |
6.73e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 6.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 372 QAAKEEGYQKLMVLQDEKLELENRLSDLEKMKVERdvwrQSEKEQCEEKLRASQMAEEAARRELQSTRLKLQQQIVNTEK 451
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKAL----LKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 452 AEKEKLENSE-LKQQISHLQ-------IQVTSLTQSENDLLNSNHMLKDMVERLKQECRNLRSQAEKAQlDVEKTLEEKQ 523
Cdd:COG4942 95 LRAELEAQKEeLAELLRALYrlgrqppLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA-ALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 27229249 524 iqwlEEKHKLHERITDREEKYNQAKEKLQRAATAQKKRKSLHENKLKRLQEKVEVLEAKKEELETE 589
Cdd:COG4942 174 ----AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
304-456 |
7.97e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 7.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 304 KELKHANKLEITDIKLEAARAKSELERERNKIQSELDGLQSDNEILKSTVEHHKALLVEKDRElirkvqaakeegyqklm 383
Cdd:PRK12704 49 KEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEE----------------- 111
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 27229249 384 vLQDEKLELENRLSDLEKMKVERDvwrQSEKEQCEEKLRASQM-AEEAARRELQSTRLKLQQQIVNTEKAEKEK 456
Cdd:PRK12704 112 -LEKKEKELEQKQQELEKKEEELE---ELIEEQLQELERISGLtAEEAKEILLEKVEEEARHEAAVLIKEIEEE 181
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
216-361 |
8.33e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.54 E-value: 8.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 216 KSLEAEVAELRAEKENSGAQVENVQRI-QVRQLAEMQATLRSLEAekqsaklQAERLEKELQSsneqntcLISKLHRADR 294
Cdd:COG2433 376 LSIEEALEELIEKELPEEEPEAEREKEhEERELTEEEEEIRRLEE-------QVERLEAEVEE-------LEAELEEKDE 441
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 27229249 295 EISTLASEVKELKHANKLEItdiklEAARAKSELERERNKIQSELDGLQSDNEILKSTVEHHKALLV 361
Cdd:COG2433 442 RIERLERELSEARSEERREI-----RKDREISRLDREIERLERELEEERERIEELKRKLERLKELWK 503
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
79-305 |
8.74e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 8.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 79 LEDLRGELVEKARDIEKMKLQVltpQKLELVKAQLQQELEApMRERFRTLDEEVERYRAEYNKLRYEYTFLKSEFEHQKE 158
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEE---KALLKQLAALERRIAA-LARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 159 EF-TRVSEEEKMKYKSEVARLekdkeelhnqLLSVDPTRDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEKensgAQVE 237
Cdd:COG4942 105 ELaELLRALYRLGRQPPLALL----------LSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR----AELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 27229249 238 NVQRIQVRQLAEMQATLRSLEAEKQSAKLQAERLEKELQSSNEQNTCLISKLHRADREISTLASEVKE 305
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
43-478 |
9.71e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 9.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 43 LKIEHKRLQEEYVKSQNELKRVLIEKQASQEKFQLLLEDLRGELVEKARDIEKMKlQVLTPQKLELVKAQLQQELEAPMR 122
Cdd:COG4717 68 LNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE-KLLQLLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 123 ERfrtldEEVERYRAEYNKLRYEYTFLKSEFEHQKEEFTRVSEEEKMKYKSEVARLEKDKEELHNQLlsvdptrdskrme 202
Cdd:COG4717 147 RL-----EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRL------------- 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 203 qlvrekTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQV----RQLAEMQATLRSLEAEKQSAKLQAERLEKELQSS 278
Cdd:COG4717 209 ------AELEEELEEAQEELEELEEELEQLENELEAAALEERlkeaRLLLLIAAALLALLGLGGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 279 NEQNTCLISKLHRADREISTLASEVKELKHANKLEITDIKLEAARAKSELERERNKIQSELDGLQSDNEILKSTVEHHKA 358
Cdd:COG4717 283 LGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 359 LLVE----KDRELIRKVQAAKEEGYQKLMVLQDEKLELENRLSDLE-----KMKVERDVWRQSEKEQCEEKLRASQMAEE 429
Cdd:COG4717 363 LQLEeleqEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEeqleeLLGELEELLEALDEEELEEELEELEEELE 442
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 27229249 430 AARRELQSTRLKLQQQIVNTEKAEKEKlENSELKQQISHLQIQVTSLTQ 478
Cdd:COG4717 443 ELEEELEELREELAELEAELEQLEEDG-ELAELLQELEELKAELRELAE 490
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
175-621 |
1.05e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 175 VARLEKDKEelhNQLLSVDPTRDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRI-----QVRQ--- 246
Cdd:PRK02224 178 VERVLSDQR---GSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVleeheERREele 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 247 -----LAEMQATLRSLEAEKQSAKLQAERLEKELQSSNEQNTCLISKLHRADREISTLASEVKEL---KHANKLEITDIK 318
Cdd:PRK02224 255 tleaeIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELedrDEELRDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 319 LEAARAKSELERERNKI---QSELDGLQSDNEILKSTVEHHKALlVEKDRELIRKVQAAKEEGYQKLMVLQDEKLELENR 395
Cdd:PRK02224 335 VAAQAHNEEAESLREDAddlEERAEELREEAAELESELEEAREA-VEDRREEIEELEEEIEELRERFGDAPVDLGNAEDF 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 396 LSDLEKmkvERDVWRQSEKEqCEEKLRASQMAEEAARRELQSTRL-KLQQQIVNTEKAEkeklENSELKQQISHLQIQVT 474
Cdd:PRK02224 414 LEELRE---ERDELREREAE-LEATLRTARERVEEAEALLEAGKCpECGQPVEGSPHVE----TIEEDRERVEELEAELE 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 475 SLTQSENDLLNSNHMLKDMVERLKQ--ECRNLRSQAEKAQLDVEKTLEEKQiqwlEEKHKLHERITDREEKYNQAKEklq 552
Cdd:PRK02224 486 DLEEEVEEVEERLERAEDLVEAEDRieRLEERREDLEELIAERRETIEEKR----ERAEELRERAAELEAEAEEKRE--- 558
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 27229249 553 rAATAQKKRKSLHENKLKRLQEKVEVLEAKKEELETENQVLNRQNVPFEEYTRLQKRLKDIQRRHNEFR 621
Cdd:PRK02224 559 -AAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERR 626
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
46-613 |
1.34e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.37 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 46 EHKRLQEEYVKSQNELKRVLIEKQASQEKFQLLLEdlrgELVEKARDIEKMKLQVLTPQKlELVKAQLQQELEAPMReRF 125
Cdd:COG5022 811 EYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAE----VLIQKFGRSLKAKKRFSLLKK-ETIYLQSAQRVELAER-QL 884
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 126 RTLDEEVERYRAEYNKLryeytflkSEFEHQKEEFTR-VSEEEKMKYKSEVARLEKDKEELHNQLLSVDPTRDskrmeql 204
Cdd:COG5022 885 QELKIDVKSISSLKLVN--------LELESEIIELKKsLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIE------- 949
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 205 vREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQVRQLAEMQATLRSLeAEKQSAKLQAERLEKELQSSNEQNTC 284
Cdd:COG5022 950 -YVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKEL-AELSKQYGALQESTKQLKELPVEVAE 1027
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 285 LISKLHRADREISTLASEVKELKHANKLEITDIKLEAARAKSELERERNKIQSELDGLQSDNEILKSTVEhhkallvEKD 364
Cdd:COG5022 1028 LQSASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTIN-------VKD 1100
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 365 RELiRKVQAAKEEGYQKLMVLQDEKLELENRLSDLEKMKVerDVWRQSEKEQCEEKLRASQMAEEAARRELQST-RLKLQ 443
Cdd:COG5022 1101 LEV-TNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLV--NTLEPVFQKLSVLQLELDGLFWEANLEALPSPpPFAAL 1177
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 444 QQIVNTEKAEKeKLENSELKQQISHLQIQVTSLTQSENDLLNSNHMLKDM----------VERLKQECRNLRSQAEKAQL 513
Cdd:COG5022 1178 SEKRLYQSALY-DEKSKLSSSEVNDLKNELIALFSKIFSGWPRGDKLKKLisegwvpteySTSLKGFNNLNKKFDTPASM 1256
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 514 DVEKTLEE-KQIQWLEEKHKLHERITDREEKyNQAKEKLQRAATAQKKRKSLHENK-LKRLQEKVEVLEAKKEelETENQ 591
Cdd:COG5022 1257 SNEKLLSLlNSIDNLLSSYKLEEEVLPATIN-SLLQYINVGLFNALRTKASSLRWKsATEVNYNSEELDDWCR--EFEIS 1333
|
570 580
....*....|....*....|...
gi 27229249 592 VLNRQNVPFEEYTR-LQKRLKDI 613
Cdd:COG5022 1334 DVDEELEELIQAVKvLQLLKDDL 1356
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
182-507 |
1.46e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.82 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 182 KEELHNQLLSV----DPTRDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQriqvRQLAEMQATLRSl 257
Cdd:PRK11281 38 EADVQAQLDALnkqkLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQ----AELEALKDDNDE- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 258 EAEKQSAKLQAERLEKELQSSNEQntclisklhradreistLASEVKELKHANKLEITdikleaarAKSELERERNKIQS 337
Cdd:PRK11281 113 ETRETLSTLSLRQLESRLAQTLDQ-----------------LQNAQNDLAEYNSQLVS--------LQTQPERAQAALYA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 338 ELDGLQSDNEILKSTVEHHKALLVEkdreliRKVQAAKEegyQKLMVLQDE--KLELEN--RLSDLEkmkverdvwrQSE 413
Cdd:PRK11281 168 NSQRLQQIRNLLKGGKVGGKALRPS------QRVLLQAE---QALLNAQNDlqRKSLEGntQLQDLL----------QKQ 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 414 KEQCEEKLRASQMAEEAARRELQSTRLKLQQQIV----NTEKAEKEKlENSELKQQISH-LQIQVTSLTQSE--NDLLNS 486
Cdd:PRK11281 229 RDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVqeaqSQDEAARIQ-ANPLVAQELEInLQLSQRLLKATEklNTLTQQ 307
|
330 340
....*....|....*....|.
gi 27229249 487 NHMLKDMVERLKQECRNLRSQ 507
Cdd:PRK11281 308 NLRVKNWLDRLTQSERNIKEQ 328
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
437-585 |
1.54e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.74 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 437 STRLKLQQQIVNTEKA----EKEKLEN---------SELKQQISHLQI---QVTSLTQSENDLLNSNH-MLKDMVERLKQ 499
Cdd:PRK00409 494 AKRLGLPENIIEEAKKligeDKEKLNEliasleeleRELEQKAEEAEAllkEAEKLKEELEEKKEKLQeEEDKLLEEAEK 573
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 500 ECRNLRSQAEKAQLDVEKTLEEKQIQWLEEKhKLHErITDREEKYNQAKEKLQRAATAQKKR-KSLHEN---KLKRLQEK 575
Cdd:PRK00409 574 EAQQAIKEAKKEADEIIKELRQLQKGGYASV-KAHE-LIEARKRLNKANEKKEKKKKKQKEKqEELKVGdevKYLSLGQK 651
|
170
....*....|
gi 27229249 576 VEVLEAKKEE 585
Cdd:PRK00409 652 GEVLSIPDDK 661
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
198-463 |
1.89e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 198 SKRMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRiqvrQLAEMQATLRSLEAEKQSAKLQAERLEKELQS 277
Cdd:COG4372 30 SEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARS----ELEQLEEELEELNEQLQAAQAELAQAQEELES 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 278 SNEQNTCLISKLHRADREISTLASEVKELKHANKLEITDIKLEAARAKsELERERNKIQSELDGLQSDNEILK--STVEH 355
Cdd:COG4372 106 LQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELK-ELEEQLESLQEELAALEQELQALSeaEAEQA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 356 HKALLVEKDRELIRKVQAAKEEGYQKLMVLQDEKLELENRLSDLEKMKVERDVWRQSEKEQCEEKLRASQMAEEAARREL 435
Cdd:COG4372 185 LDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELE 264
|
250 260
....*....|....*....|....*...
gi 27229249 436 QSTRLKLQQQIVNTEKAEKEKLENSELK 463
Cdd:COG4372 265 LAILVEKDTEEEELEIAALELEALEEAA 292
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
104-621 |
1.98e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 104 QKLELVKAQLQQELEAPMRERFRTLDEEVERYRAEYN-----------KLRYEYTFLKSE---FEHQKEEFTRVSEEEKM 169
Cdd:pfam12128 271 ETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNgelsaadaavaKDRSELEALEDQhgaFLDADIETAAADQEQLP 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 170 KYKSEVARLEKDKEEL---HNQLLSVDPTRDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQVRQ 246
Cdd:pfam12128 351 SWQSELENLEERLKALtgkHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEA 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 247 L---AEMQATLRSLEAEKQSAKLQAERLEKELQSSNEQNTCLI----SKLHRADREISTLASEVKELKHANKleitdikl 319
Cdd:pfam12128 431 GkleFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIerarEEQEAANAEVERLQSELRQARKRRD-------- 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 320 EAARAKSELERERNKIQSELDGLQSDNEILKSTVEHHKALLVEKDRELIRKVQAAKEEGYQKLMVLQDEKL--------- 390
Cdd:pfam12128 503 QASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSvggelnlyg 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 391 ------------------ELENRLSDLEK-MKVERDVWRQSEKE--QCEEKLRASQMAEEAARRELQSTRLKLqQQIVNT 449
Cdd:pfam12128 583 vkldlkridvpewaaseeELRERLDKAEEaLQSAREKQAAAEEQlvQANGELEKASREETFARTALKNARLDL-RRLFDE 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 450 EKAEKEKLEnselKQQISHLQIQVTSLTQSENDLLNSNHMLKDMVERLKQECRNLRSQAEKAQLDVEKTLEEKQIQwlee 529
Cdd:pfam12128 662 KQSEKDKKN----KALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLAL---- 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 530 khkLHERITDREEKYNQAKEKLQRAATAQKKRKSLHENKLKRLQEKVEVLEAKKEELETENQVLNR-----QNVPFEEYT 604
Cdd:pfam12128 734 ---LKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRyfdwyQETWLQRRP 810
|
570
....*....|....*..
gi 27229249 605 RLQKRLKDIQRRHNEFR 621
Cdd:pfam12128 811 RLATQLSNIERAISELQ 827
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
127-605 |
2.10e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.60 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 127 TLDEEVERYRAEYNKLRYEYTFLKSE----FEHQKEEFTRVSEEE------KMKYKSEVArleKDKEELHNQLLSVDPTR 196
Cdd:COG5022 674 TFDEFVQRYRILSPSKSWTGEYTWKEdtknAVKSILEELVIDSSKyqigntKVFFKAGVL---AALEDMRDAKLDNIATR 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 197 DSKRMEQ-LVREKthLLQKLKSLEAevaeLRAEKENsGAQVENVQR-IQVRQLAEMQATLRSLEAEKQSAKLQAERLEKE 274
Cdd:COG5022 751 IQRAIRGrYLRRR--YLQALKRIKK----IQVIQHG-FRLRRLVDYeLKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQ 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 275 LQSSNEQNTCLISKLHRADREISTLASEVKELKHANKLEITDIKLEAARAKSELERERNKIQseldGLQSDNeilkSTVE 354
Cdd:COG5022 824 KTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQ----ELKIDV----KSIS 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 355 HHKALLVEKDRELIRKVQAAKEEgyqklmvLQDEKLELENRLSDLEKMKVERDVWRQSEKEQCEEKLRAsqmaeeaarrE 434
Cdd:COG5022 896 SLKLVNLELESEIIELKKSLSSD-------LIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELN----------K 958
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 435 LQSTRLKLQQQIVNTEKA-EKEKLENSELKQQISHLQIQVTSLTQsendLLNSNHMLKDMVERLKQECRNLRSQAEKAQL 513
Cdd:COG5022 959 LHEVESKLKETSEEYEDLlKKSTILVREGNKANSELKNFKKELAE----LSKQYGALQESTKQLKELPVEVAELQSASKI 1034
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 514 DVEKTLEEKQIQWLEEKHKLHEritdREEKYNQAKEKlqraATAQKKRKSLHENKLKRLQEKVEVLEakKEELETENQVL 593
Cdd:COG5022 1035 ISSESTELSILKPLQKLKGLLL----LENNQLQARYK----ALKLRRENSLLDDKQLYQLESTENLL--KTINVKDLEVT 1104
|
490
....*....|..
gi 27229249 594 NRQNVPFEEYTR 605
Cdd:COG5022 1105 NRNLVKPANVLQ 1116
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
380-587 |
2.17e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 380 QKLMVLQDEKLELENRLSDLekmkverdvwrQSEKEQCEEKLRASQMAEEAARRELQstrlKLQQQIVNTEKAEKEKLEn 459
Cdd:COG3883 23 KELSELQAELEAAQAELDAL-----------QAELEELNEEYNELQAELEALQAEID----KLQAEIAEAEAEIEERRE- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 460 sELKQQISHLQIQ------VTSLTQSEN--DLLNSNHMLKDMVERLKQECRNLrsQAEKAQLDVEKTLEEKQIQWLEEKh 531
Cdd:COG3883 87 -ELGERARALYRSggsvsyLDVLLGSESfsDFLDRLSALSKIADADADLLEEL--KADKAELEAKKAELEAKLAELEAL- 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 27229249 532 klheritdrEEKYNQAKEKLQRAATAQKKRKSLHENKLKRLQEKVEVLEAKKEELE 587
Cdd:COG3883 163 ---------KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
214-408 |
2.35e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 214 KLKSLEAEVAELRAEKENSGAQVENVqriqVRQLAEMQATLRSLEAEKQSAKLQAERLEKELQSSNEQNTC--LISKLHR 291
Cdd:PHA02562 221 KYDELVEEAKTIKAEIEELTDELLNL----VMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCptCTQQISE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 292 ADREISTLASEVKELKHanKLEITDIKLEAArakSELERERNKIQSELDGLQSDNEILKSTV--EHHKALLVEKdreLIR 369
Cdd:PHA02562 297 GPDRITKIKDKLKELQH--SLEKLDTAIDEL---EEIMDEFNEQSKKLLELKNKISTNKQSLitLVDKAKKVKA---AIE 368
|
170 180 190
....*....|....*....|....*....|....*....
gi 27229249 370 KVQAAKEEGYQKLMVLQDEKLELENRLSDLEKMKVERDV 408
Cdd:PHA02562 369 ELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGI 407
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
104-443 |
3.04e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 3.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 104 QKLELVKAQLQQELEAPMRERFRTLDE------EVERYRAEYNKLRYEYTFLKSEFEhQKEEFTRVSEEEKMKYKSEVAR 177
Cdd:TIGR02169 684 EGLKRELSSLQSELRRIENRLDELSQElsdasrKIGEIEKEIEQLEQEEEKLKERLE-ELEEDLSSLEQEIENVKSELKE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 178 LEKDKEELHnqllsvdptrdskrmeqlvrekthllQKLKSLEAEVAELRAEKENSG-AQVENVQRIQVRQLAEMQATLRS 256
Cdd:TIGR02169 763 LEARIEELE--------------------------EDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLRE 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 257 LEAEKQSAKLQAERLEKELQSSNEQNTCLISKLHRADREISTLASEVKELKHANKleitdiklEAARAKSELERERNKIQ 336
Cdd:TIGR02169 817 IEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELE--------ELEAALRDLESRLGDLK 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 337 SELDGLQSDNEILKSTVEHHKAlLVEKDRELIRKVQAAKEEGYQKLMVLQDEKLELEnrlSDLEKMKVERDVwrQSEKEQ 416
Cdd:TIGR02169 889 KERDELEAQLRELERKIEELEA-QIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE---EIPEEELSLEDV--QAELQR 962
|
330 340 350
....*....|....*....|....*....|....*..
gi 27229249 417 CEEKLR--------ASQMAEEAARR--ELQSTRLKLQ 443
Cdd:TIGR02169 963 VEEEIRalepvnmlAIQEYEEVLKRldELKEKRAKLE 999
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
48-596 |
3.42e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 48 KRLQEEYVKSQNELKRVLIEKQASQEKFQLLLEDLRGELVEKARDIEKMKLQVltpQKLELVKAQLQQELEApmrerfrt 127
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY---AELKEELEDLRAELEE-------- 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 128 LDEEVERYRAEYNKLRYEYTFLKSEFEHQKEEFTRVsEEEKMKYKSEVARLEKDKEELHNQLLSVDPTRDSKRMEqlVRE 207
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRL-QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE--IKK 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 208 KThllQKLKSLEAEVAELRAEKENSGAQVENVQRIQV---RQLAEMQATLRSLEAEKQSAKlqaeRLEKELQSSNEQNTC 284
Cdd:TIGR02169 453 QE---WKLEQLAADLSKYEQELYDLKEEYDRVEKELSklqRELAEAEAQARASEERVRGGR----AVEEVLKASIQGVHG 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 285 LISKLHRADREISTlASEVKELKHANKLEITDiKLEAARAKSELERER---------NKIQSE----------------L 339
Cdd:TIGR02169 526 TVAQLGSVGERYAT-AIEVAAGNRLNNVVVED-DAVAKEAIELLKRRKagratflplNKMRDErrdlsilsedgvigfaV 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 340 DGLQSDNE-------ILKSTV-----EHHKAL------------LVEK--------------------DRELIRKVQAAK 375
Cdd:TIGR02169 604 DLVEFDPKyepafkyVFGDTLvvediEAARRLmgkyrmvtlegeLFEKsgamtggsraprggilfsrsEPAELQRLRERL 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 376 EEGYQKLMVLQDEKLELENR-------LSDLEKMKVERDVWRQ----------SEKEQCEEKLRASQMAEEAARRELQST 438
Cdd:TIGR02169 684 EGLKRELSSLQSELRRIENRldelsqeLSDASRKIGEIEKEIEqleqeeeklkERLEELEEDLSSLEQEIENVKSELKEL 763
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 439 RLKLQQQivnTEKAEKEKLENSELKQQISHLQI-QVTSLTQSENDLLNSNHMLKDMVERLKQECRNLRSQAEKAQLDVEK 517
Cdd:TIGR02169 764 EARIEEL---EEDLHKLEEALNDLEARLSHSRIpEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE 840
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 27229249 518 TLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAATAQKKRKSLhENKLKRLQEKVEVLEAKKEELETENQVLNRQ 596
Cdd:TIGR02169 841 QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL-KKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
82-520 |
3.71e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.83 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 82 LRGELVEKARDIEKMKLQVLTPQKLELVKAQLQQELEAPMRERFRTL--DEEVERYRAEYNKLRYEYTFLKSEFEHQKEE 159
Cdd:COG5022 760 LRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLgsRKEYRSYLACIIKLQKTIKREKKLRETEEVE 839
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 160 FTRVSEEEKMKYkSEVARLEKDKEELHNQLLSVDPT-------RDSKRMEQLVREKTHLLQKLKSLEAEVAELRaeKENS 232
Cdd:COG5022 840 FSLKAEVLIQKF-GRSLKAKKRFSLLKKETIYLQSAqrvelaeRQLQELKIDVKSISSLKLVNLELESEIIELK--KSLS 916
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 233 GAQVENVQrIQVRQLAEMQATLRSLEAEKQSAKLQaeRLEKELQSSNEQNtcliSKLHRADREISTLASEVKELKHANKL 312
Cdd:COG5022 917 SDLIENLE-FKTELIARLKKLLNNIDLEEGPSIEY--VKLPELNKLHEVE----SKLKETSEEYEDLLKKSTILVREGNK 989
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 313 EITDIKLeaarakseLERERNKIQSELDGLQSDNEILKstvehhkallvEKDRELIRKVQAAK---EEGYQKLMVLQDEK 389
Cdd:COG5022 990 ANSELKN--------FKKELAELSKQYGALQESTKQLK-----------ELPVEVAELQSASKiisSESTELSILKPLQK 1050
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 390 LElenRLSDLEKMKVE---RDVWRQSEKEQCEEKLRASQMAEEAARRELQSTRLKLQQQIVNTEKAEKEKLE----NSEL 462
Cdd:COG5022 1051 LK---GLLLLENNQLQaryKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVaqmiKLNL 1127
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 27229249 463 KQQISHLQIQVTSLTQSENDLLNSNHMLKDMVERLKQECRNLRSQAEKAQLDVEKTLE 520
Cdd:COG5022 1128 LQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRLYQS 1185
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
385-583 |
4.13e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 385 LQDEKLELENRLSDLEKMKVERDVWRQSEK----EQCEEKLRASQMAEEAARRELQSTRLKLQQQIvntEKAEKEKLENS 460
Cdd:COG4913 260 LAERYAAARERLAELEYLRAALRLWFAQRRlellEAELEELRAELARLEAELERLEARLDALREEL---DELEAQIRGNG 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 461 elKQQISHLQIQVTSLTQSendllnsnhmlkdmVERLKQECRNLRSQAEKAQLDVEKTLEEkqiqwLEEkhkLHERITDR 540
Cdd:COG4913 337 --GDRLEQLEREIERLERE--------------LEERERRRARLEALLAALGLPLPASAEE-----FAA---LRAEAAAL 392
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 27229249 541 EEKYNQAKEKLQRAATAQKKRKSLHENKLKRLQEKVEVLEAKK 583
Cdd:COG4913 393 LEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
104-281 |
4.83e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 4.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 104 QKLELVKAQLQQELEApMRERFRTLDEEVERYRAEYNKLRYEYTFLKSEFEHQKEEFTRVSEEEKMKYK--SEVAR---- 177
Cdd:COG3883 19 QAKQKELSELQAELEA-AQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREelGERARalyr 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 178 -------LE-----KDKEELHNQLLSVD--PTRDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRiq 243
Cdd:COG3883 98 sggsvsyLDvllgsESFSDFLDRLSALSkiADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA-- 175
|
170 180 190
....*....|....*....|....*....|....*...
gi 27229249 244 vrQLAEMQATLRSLEAEKQSAKLQAERLEKELQSSNEQ 281
Cdd:COG3883 176 --QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
424-612 |
6.60e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 6.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 424 SQMAEEAARRELQSTRLKLQQQIVNTEKAEKEKLENSELKQQISHLQIQVTSLTQSENDLlnsnhmlKDMVERLKQECRN 503
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERL-------EARLDALREELDE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229249 504 LRSQAEKAQLDVEKTLEeKQIQWLEEKHK---------------LHERITDREEKYNQAKEKLQRAATAQKKRKSLHENK 568
Cdd:COG4913 328 LEAQIRGNGGDRLEQLE-REIERLERELEererrrarleallaaLGLPLPASAEEFAALRAEAAALLEALEEELEALEEA 406
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 27229249 569 LKRLQEKVEVLEAKKEELETENQVL--NRQNVPfEEYTRLQKRLKD 612
Cdd:COG4913 407 LAEAEAALRDLRRELRELEAEIASLerRKSNIP-ARLLALRDALAE 451
|
|
| |
