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Conserved domains on  [gi|164519124|ref|NP_083798|]
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G-protein-signaling modulator 2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
65-335 2.12e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 88.14  E-value: 2.12e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  65 YSQLGNAYFYLHDYAKALEYHHHDLTLARtigdqlGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELndkvgeARA 144
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 145 LYNLGNVYHAKGKsfgcpgpqdtgefpedvrnaLQAAVDLYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 224
Cdd:COG0457   79 LNNLGLALQALGR--------------------YEEALEDYDK------ALELDPDDAEALYNLGLALLELGRYDEAIEA 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 225 HEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYKKtlLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 304
Cdd:COG0457  133 YERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALLLALE 204

                        250       260       270
                 ....*....|....*....|....*....|.
gi 164519124 305 HLKHLAIAQELKDRIGEGRACWSLGNAYTAL 335
Cdd:COG0457  205 QALRKKLAILTLAALAELLLLALALLLALRL 235
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 490-512 1.00e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


:

Pssm-ID: 214645  Cd Length: 23  Bit Score: 45.18  E-value: 1.00e-06
                           10        20
                   ....*....|....*....|...
gi 164519124   490 DEGFFDLLRRFQSNRMDDQRCHL 512
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 594-616 1.75e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


:

Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.41  E-value: 1.75e-06
                           10        20
                   ....*....|....*....|...
gi 164519124   594 DEDFFDILVKCQGSRLDDQRCAP 616
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco pfam02188
GoLoco motif;
629-650 1.01e-05

GoLoco motif;


:

Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.41  E-value: 1.01e-05
                          10        20
                  ....*....|....*....|..
gi 164519124  629 EDFFSLILRSQAKRMDEQRVLL 650
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
544-565 1.26e-05

GoLoco motif;


:

Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.02  E-value: 1.26e-05
                          10        20
                  ....*....|....*....|..
gi 164519124  544 DEFLDLLASSQSRRLDDQRASF 565
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
TPR_7 pfam13176
Tetratricopeptide repeat;
324-359 3.33e-03

Tetratricopeptide repeat;


:

Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.59  E-value: 3.33e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 164519124  324 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 359
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
65-335 2.12e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 88.14  E-value: 2.12e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  65 YSQLGNAYFYLHDYAKALEYHHHDLTLARtigdqlGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELndkvgeARA 144
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 145 LYNLGNVYHAKGKsfgcpgpqdtgefpedvrnaLQAAVDLYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 224
Cdd:COG0457   79 LNNLGLALQALGR--------------------YEEALEDYDK------ALELDPDDAEALYNLGLALLELGRYDEAIEA 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 225 HEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYKKtlLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 304
Cdd:COG0457  133 YERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALLLALE 204

                        250       260       270
                 ....*....|....*....|....*....|.
gi 164519124 305 HLKHLAIAQELKDRIGEGRACWSLGNAYTAL 335
Cdd:COG0457  205 QALRKKLAILTLAALAELLLLALALLLALRL 235
TPR_12 pfam13424
Tetratricopeptide repeat;
243-314 6.90e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.77  E-value: 6.90e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 164519124  243 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 314
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 490-512 1.00e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 45.18  E-value: 1.00e-06
                           10        20
                   ....*....|....*....|...
gi 164519124   490 DEGFFDLLRRFQSNRMDDQRCHL 512
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco pfam02188
GoLoco motif;
491-512 1.70e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 44.72  E-value: 1.70e-06
                          10        20
                  ....*....|....*....|..
gi 164519124  491 EGFFDLLRRFQSNRMDDQRCHL 512
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 594-616 1.75e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.41  E-value: 1.75e-06
                           10        20
                   ....*....|....*....|...
gi 164519124   594 DEDFFDILVKCQGSRLDDQRCAP 616
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco pfam02188
GoLoco motif;
595-614 3.54e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 43.56  E-value: 3.54e-06
                          10        20
                  ....*....|....*....|
gi 164519124  595 EDFFDILVKCQGSRLDDQRC 614
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRC 20
GoLoco pfam02188
GoLoco motif;
629-650 1.01e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.41  E-value: 1.01e-05
                          10        20
                  ....*....|....*....|..
gi 164519124  629 EDFFSLILRSQAKRMDEQRVLL 650
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
544-565 1.26e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.02  E-value: 1.26e-05
                          10        20
                  ....*....|....*....|..
gi 164519124  544 DEFLDLLASSQSRRLDDQRASF 565
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 628-650 1.89e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 41.72  E-value: 1.89e-05
                           10        20
                   ....*....|....*....|...
gi 164519124   628 DEDFFSLILRSQAKRMDEQRVLL 650
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 543-565 6.11e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 40.18  E-value: 6.11e-05
                           10        20
                   ....*....|....*....|...
gi 164519124   543 TDEFLDLLASSQSRRLDDQRASF 565
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 36-376 1.48e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 45.29  E-value: 1.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  36 KSGDCRAGVSFFEAAVQV-----GTEDLKTLSAiYSQLGNAYFYLHDYAKALEYHHHDLTLARTIgDQLGEA-----KAS 105
Cdd:NF040586 404 LRGDYESARDLAERALERwrerlGPDDRQTLRL-RFHLANALRSLGRYEEARELDEDTLERQRRV-LGLGEDhphtlMTA 481

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 106 GNLGNTLKVLGNFDEAivccqrhLDISRElndkvgearalynlgnVYHAKGKSFGcpgpqdtgefpEDVRNALQAAvdly 185
Cdd:NF040586 482 GGLGADLRALGRFREA-------LELDEE----------------TLERHRRVFG-----------EDHPRTLRAA---- 523

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 186 eenlslvtalgdraaqgrafGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FG-DKAAERRAYSNLGNAYIFLGEF----- 258
Cdd:NF040586 524 --------------------NNLAVSLRLLGDYREALELDREVLRRRRRvLGpDHPRTLLSANNLARDLRELGRYaeald 583

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 259 --ETASEYYKKTLLLA------RQLKDRAVeaqSCYSLGntytllqDYEKAidyhlkhLAIAQE----LKDRIGEG---- 322
Cdd:NF040586 584 llEEALERYREVLGGPdhpdtlRAAKSLAV---ALRRAG-------RLEEA-------LELAEDtyerYRRRFGPDhpdt 646

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 323 RAC-WSLGNAYTALGNHDQAMHFAEKHLEISREVGdksGE-----LTARLNLSDLQMVLG 376
Cdd:NF040586 647 LAAaLSLANDLRALGDADEARELAREVLDRYRRVL---GEdhpftLACRNNLAVLLRALG 703
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 282-314 5.75e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 5.75e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 164519124   282 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 314
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_7 pfam13176
Tetratricopeptide repeat;
324-359 3.33e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.59  E-value: 3.33e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 164519124  324 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 359
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
65-335 2.12e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 88.14  E-value: 2.12e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  65 YSQLGNAYFYLHDYAKALEYHHHDLTLARtigdqlGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELndkvgeARA 144
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 145 LYNLGNVYHAKGKsfgcpgpqdtgefpedvrnaLQAAVDLYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 224
Cdd:COG0457   79 LNNLGLALQALGR--------------------YEEALEDYDK------ALELDPDDAEALYNLGLALLELGRYDEAIEA 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 225 HEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYKKtlLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 304
Cdd:COG0457  133 YERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALLLALE 204

                        250       260       270
                 ....*....|....*....|....*....|.
gi 164519124 305 HLKHLAIAQELKDRIGEGRACWSLGNAYTAL 335
Cdd:COG0457  205 QALRKKLAILTLAALAELLLLALALLLALRL 235
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
101-368 2.04e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 85.06  E-value: 2.04e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 101 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRElndkvgEARALYNLGNVYHAKGKsfgcpgpqdtgefpedvrnaLQA 180
Cdd:COG0457    7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGR--------------------YEE 60

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 181 AVDLYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFET 260
Cdd:COG0457   61 ALADYEQ------ALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDE 128

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 261 ASEYYKKTLLLARQLkdraveAQSCYSLGNTYTLLQDYEKAIDYHLKhlAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 340
Cdd:COG0457  129 AIEAYERALELDPDD------ADALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALL 200

                        250       260
                 ....*....|....*....|....*...
gi 164519124 341 AMHFAEKHLEISREVGDKSGELTARLNL 368
Cdd:COG0457  201 LALEQALRKKLAILTLAALAELLLLALA 228
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 67-351 3.23e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 73.61  E-value: 3.23e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  67 QLGNAYFYLHDYAKALEYhhhdltLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRElndkvgEARALY 146
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDL------LEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 147 NLGNVYHAKGKsfgcpgpqdtgefpedvrnaLQAAVDLYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 226
Cdd:COG2956   81 ELAQDYLKAGL--------------------LDRAEELLEK------LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLE 134

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 227 QrllIAKEFGDKAaerRAYSNLGNAYIFLGEFETASEYYKKtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIDYHL 306
Cdd:COG2956  135 R---LLKLGPENA---HAYCELAELYLEQGDYDEAIEALEK----ALKLDPDCARAL--LLLAELYLEQGDYEEAIAALE 202

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 164519124 307 KHLAIAQELKDRIGEgracwsLGNAYTALGNHDQAMHFAEKHLEI 351
Cdd:COG2956  203 RALEQDPDYLPALPR------LAELYEKLGDPEEALELLRKALEL 241
COG3899 COG3899
Predicted ATPase [General function prediction only];
175-329 3.25e-11

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 66.81  E-value: 3.25e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  175 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF-------RDAVIAHEQRLLIAKEFGDKAAERRAYSN 247
Cdd:COG3899   718 RGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFeeaeallERALAARALAALAALRHGNPPASARAYAN 797

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  248 LGnaYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 327
Cdd:COG3899   798 LG--LLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAA 875


                  ..
gi 164519124  328 LG 329
Cdd:COG3899   876 AA 877
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 56-274 6.25e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.40  E-value: 6.25e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  56 EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTigdqlgEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIsrel 135
Cdd:COG3914   72 AALLLLAALLELAALLLQALGRYEEALALYRRALALNPD------NAEALFNLGNLLLALGRLEEALAALRRALAL---- 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 136 ndKVGEARALYNLGNVYHAKGKsfgcpgpqdtgefpedvrnaLQAAVDLYEEnlslvtALGDRAAQGRAFGNLGNTHYLL 215
Cdd:COG3914  142 --NPDFAEAYLNLGEALRRLGR--------------------LEEAIAALRR------ALELDPDNAEALNNLGNALQDL 193

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 164519124 216 GNFRDAVIAHEQRLLIAKEFgdkaaeRRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 274
Cdd:COG3914  194 GRLEEAIAAYRRALELDPDN------ADAHSNLLFALRQACDWEVYDRFEELLAALARG 246
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 29-350 7.40e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.21  E-value: 7.40e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  29 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTlsaiYSQLGNAYFYLHDYAKALEYHHHDLTLARTigdqlgEAKASGNL 108
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEA----HLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLEL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 109 GNTLKVLGNFDEAIVCCQRHLDISRElndkvgEARALYNLGNVYHAKGKsfgcpgpqdtgefpedvrnaLQAAVDLYEEn 188
Cdd:COG2956   83 AQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGD--------------------WEKAIEVLER- 135

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 189 lslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFgdkaaeRRAYSNLGNAYIFLGEFETASEYYKKT 268
Cdd:COG2956  136 -----LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC------ARALLLLAELYLEQGDYEEAIAALERA 204

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 269 LllarQLKDRAVEAQscYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIgegracwSLGNAYTALGNHDQAMHFAEKH 348
Cdd:COG2956  205 L----EQDPDYLPAL--PRLAELYEKLGDPEEALELLRKALELDPSDDLLL-------ALADLLERKEGLEAALALLERQ 271


                 ..
gi 164519124 349 LE 350
Cdd:COG2956  272 LR 273
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 175-351 5.04e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.70  E-value: 5.04e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 175 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIF 254
Cdd:COG3914   51 LAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLA 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 255 LGEFETASEYYKKtlllARQLKDRAVEAqsCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELkdrigeGRACWSLGNAYTA 334
Cdd:COG3914  125 LGRLEEALAALRR----ALALNPDFAEA--YLNLGEALRRLGRLEEAIAALRRALELDPDN------AEALNNLGNALQD 192

                        170
                 ....*....|....*..
gi 164519124 335 LGNHDQAMHFAEKHLEI 351
Cdd:COG3914  193 LGRLEEAIAAYRRALEL 209
TPR_12 pfam13424
Tetratricopeptide repeat;
243-314 6.90e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.77  E-value: 6.90e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 164519124  243 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 314
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 174-376 7.87e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.85  E-value: 7.87e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 174 VRNALQAAVDLYEENLSlvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 253
Cdd:COG3914   13 AAAALLAAAAAAELALA---AELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQ 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 254 FLGEFETASEYYKKTLLLARQlkdravEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELkdrigeGRACWSLGNAYT 333
Cdd:COG3914   90 ALGRYEEALALYRRALALNPD------NAEALFNLGNLLLALGRLEEALAALRRALALNPDF------AEAYLNLGEALR 157

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 164519124 334 ALGNHDQAMHFAEKHLEIsrevgdKSGELTARLNLSDLQMVLG 376
Cdd:COG3914  158 RLGRLEEAIAALRRALEL------DPDNAEALNNLGNALQDLG 194
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 199-352 8.79e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.43  E-value: 8.79e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 199 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYKKtlllARQLKDR 278
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPE------AFALLGEILLQLGDLDEAIVLLHE----ALELDPD 70

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 164519124 279 AVEAQscYSLGNTYTLLQDYEKAIDYHLKHLAIAQElkdrigEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 352
Cdd:COG4783   71 EPEAR--LNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALELD 136
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 175-312 2.33e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 57.31  E-value: 2.33e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 175 RNALQAAVDLYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIF 254
Cdd:COG3914   91 LGRYEEALALYRR------ALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE------AYLNLGEALRR 158

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 164519124 255 LGEFETASEYYKKtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIDYHLKHLAIA 312
Cdd:COG3914  159 LGRLEEAIAALRR----ALELDPDNAEAL--NNLGNALQDLGRLEEAIAAYRRALELD 210
TPR_12 pfam13424
Tetratricopeptide repeat;
286-354 4.38e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 50.46  E-value: 4.38e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 164519124  286 YSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 354
Cdd:pfam13424   7 NNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
31-245 2.19e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 52.70  E-value: 2.19e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  31 GERLCKSGDCRAGVSFFEAAVQVGTEDlktlSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTigdqlgEAKASGNLGN 110
Cdd:COG0457   49 GLAYLRLGRYEEALADYEQALELDPDD----AEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGL 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 111 TLKVLGNFDEAIVCCQRHLDISRELndkvgeARALYNLGNVYHAKGKSfgcPGPQDTGEFPEDVRNALQAAVDLYEENLS 190
Cdd:COG0457  119 ALLELGRYDEAIEAYERALELDPDD------ADALYNLGIALEKLGRY---EEALELLEKLEAAALAALLAAALGEAALA 189

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 164519124 191 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 245
Cdd:COG0457  190 LAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 140-314 5.11e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.42  E-value: 5.11e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 140 GEARALYNLGNVYHAKGKsfgcpgpqdtgefPEDVRNALQAAVDLYEENLslvtalgdraaqgRAFGNLGNTHYLLGNFR 219
Cdd:COG4783    2 ACAEALYALAQALLLAGD-------------YDEAEALLEKALELDPDNP-------------EAFALLGEILLQLGDLD 55

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 220 DAVIAHEQRLLIAKEfgdkaaERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQlkdravEAQSCYSLGNTYTLLQDYE 299
Cdd:COG4783   56 EAIVLLHEALELDPD------EPEARLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPD 123

                        170
                 ....*....|....*
gi 164519124 300 KAIDYHLKHLAIAQE 314
Cdd:COG4783  124 EAIAALEKALELDPD 138
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 191-304 6.27e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.85  E-value: 6.27e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 191 LVTALGDRAAQ----GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYK 266
Cdd:COG4235    2 AIARLRQALAAnpndAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEEAEELLE 75

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 164519124 267 KtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIDY 304
Cdd:COG4235   76 R----ALALDPDNPEAL--YLLGLAAFQQGDYAEAIAA 107
TPR_12 pfam13424
Tetratricopeptide repeat;
203-274 8.09e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.00  E-value: 8.09e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 164519124  203 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 274
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 490-512 1.00e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 45.18  E-value: 1.00e-06
                           10        20
                   ....*....|....*....|...
gi 164519124   490 DEGFFDLLRRFQSNRMDDQRCHL 512
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco pfam02188
GoLoco motif;
491-512 1.70e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 44.72  E-value: 1.70e-06
                          10        20
                  ....*....|....*....|..
gi 164519124  491 EGFFDLLRRFQSNRMDDQRCHL 512
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 594-616 1.75e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.41  E-value: 1.75e-06
                           10        20
                   ....*....|....*....|...
gi 164519124   594 DEDFFDILVKCQGSRLDDQRCAP 616
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
TPR_12 pfam13424
Tetratricopeptide repeat;
102-187 1.90e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.84  E-value: 1.90e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  102 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKsfgcpgpqdtgefPEDVRNALQ 179
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGR-------------YEEALELLE 69


                  ....*...
gi 164519124  180 AAVDLYEE 187
Cdd:pfam13424  70 RALALAEK 77
COG3899 COG3899
Predicted ATPase [General function prediction only];
78-341 2.51e-06

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 51.01  E-value: 2.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124   78 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYhakgk 157
Cdd:COG3899   728 LERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLL----- 802

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  158 sfgcpgpqdtgefpedvRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 237
Cdd:COG3899   803 -----------------LGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGD 865

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  238 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 311
Cdd:COG3899   866 AALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAaalaaaAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAAL 945

                         250       260       270
                  ....*....|....*....|....*....|
gi 164519124  312 AQELKDRIGEGRACWSLGNAYTALGNHDQA 341
Cdd:COG3899   946 AAAAAAAALAAALALAAAAAAAAAAALAAA 975
GoLoco pfam02188
GoLoco motif;
595-614 3.54e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 43.56  E-value: 3.54e-06
                          10        20
                  ....*....|....*....|
gi 164519124  595 EDFFDILVKCQGSRLDDQRC 614
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRC 20
TPR_12 pfam13424
Tetratricopeptide repeat;
61-134 3.66e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.07  E-value: 3.66e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 164519124   61 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 134
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 177-312 3.77e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 3.77e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 177 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLG 256
Cdd:COG5010   29 AALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE------LYYNLALLYSRSG 102

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 164519124 257 EFETASEYYKKtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIDYHLKHLAIA 312
Cdd:COG5010  103 DKDEAKEYYEK----ALALSPDNPNAY--SNLAALLLSLGQDDEAKAALQRALGTS 152
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 26-157 5.99e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 5.99e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  26 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLktlsAIYSQLGNAYFYLHDYAKALEYHHHDLTLARtigdqlGEAKAS 105
Cdd:COG4783    6 ALYALAQALLLAGDYDEAEALLEKALELDPDNP----EAFALLGEILLQLGDLDEAIVLLHEALELDP------DEPEAR 75

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 164519124 106 GNLGNTLKVLGNFDEAIVCCQRHLDISRElndkvgEARALYNLGNVYHAKGK 157
Cdd:COG4783   76 LNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGR 121
GoLoco pfam02188
GoLoco motif;
629-650 1.01e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.41  E-value: 1.01e-05
                          10        20
                  ....*....|....*....|..
gi 164519124  629 EDFFSLILRSQAKRMDEQRVLL 650
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
544-565 1.26e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.02  E-value: 1.26e-05
                          10        20
                  ....*....|....*....|..
gi 164519124  544 DEFLDLLASSQSRRLDDQRASF 565
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 628-650 1.89e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 41.72  E-value: 1.89e-05
                           10        20
                   ....*....|....*....|...
gi 164519124   628 DEDFFSLILRSQAKRMDEQRVLL 650
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 243-352 2.35e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 2.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 243 RAYSNLGNAYIFLGEFETASEYYKKtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIDYHLKHLAIAQElkdrigEG 322
Cdd:COG4235   18 EGWLLLGRAYLRLGRYDEALAAYEK----ALRLDPDNADAL--LDLAEALLAAGDTEEAEELLERALALDPD------NP 85

                         90       100       110
                 ....*....|....*....|....*....|
gi 164519124 323 RACWSLGNAYTALGNHDQAMHFAEKHLEIS 352
Cdd:COG4235   86 EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
141-324 3.92e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 45.29  E-value: 3.92e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 141 EARALYNLGNVYHAKGKsfgcpgpqdtgefpedvrnaLQAAVDLYEenlslvTALGDRAAQGRAFGNLGNTHYLLGNFRD 220
Cdd:COG4785   72 LAQLYYERGVAYDSLGD--------------------YDLAIADFD------QALELDPDLAEAYNNRGLAYLLLGDYDA 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 221 AVIAheqrlliakeFgDKAAERR-----AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYslgntytLL 295
Cdd:COG4785  126 ALED----------F-DRALELDpdyayAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAE-------RK 187

                        170       180
                 ....*....|....*....|....*....
gi 164519124 296 QDYEKAIDYHLKHLAIAQELKDRIGEGRA 324
Cdd:COG4785  188 LDPEKALALLLEDWATAYLLQGDTEEARE 216
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
251-354 4.07e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 4.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 251 AYIFLGEFETASEYYKKTLLLARQlkdravEAQSCYSLGNTYTLLQDYEKAIDYHlKHLAIAQElkdrigEGRACWSLGN 330
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALE-KALKLDPN------NAEALLNLAE 67

                         90       100
                 ....*....|....*....|....
gi 164519124 331 AYTALGNHDQAMHFAEKHLEISRE 354
Cdd:COG3063   68 LLLELGDYDEALAYLERALELDPS 91
TPR_7 pfam13176
Tetratricopeptide repeat;
284-318 4.36e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 40.99  E-value: 4.36e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 164519124  284 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 318
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 248-352 5.03e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.49  E-value: 5.03e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 248 LGNAYIFLGEFETASEYYKKTLllarQLKDRAVEAQscYSLGNTYTLLQDYEKAIDYHLKHLAIAQElkdrigEGRACWS 327
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEAL----ELDPETVEAH--LALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLE 81

                         90       100
                 ....*....|....*....|....*
gi 164519124 328 LGNAYTALGNHDQAMHFAEKHLEIS 352
Cdd:COG2956   82 LAQDYLKAGLLDRAEELLEKLLELD 106
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 543-565 6.11e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 40.18  E-value: 6.11e-05
                           10        20
                   ....*....|....*....|...
gi 164519124   543 TDEFLDLLASSQSRRLDDQRASF 565
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
TPR_12 pfam13424
Tetratricopeptide repeat;
142-234 7.77e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.60  E-value: 7.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  142 ARALYNLGNVYHAKGKsfgcpgpqdtgefpedvrnaLQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFR 219
Cdd:pfam13424   3 ATALNNLAAVLRRLGR--------------------YDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYE 62

                          90
                  ....*....|....*
gi 164519124  220 DAVIAHEQRLLIAKE 234
Cdd:pfam13424  63 EALELLERALALAEK 77
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
173-352 1.13e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 44.14  E-value: 1.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 173 DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAaerRAYSNLGNAY 252
Cdd:COG4785    7 ALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLA---QLYYERGVAY 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 253 IFLGEFETASEYYKKTLllarQLKDRAVEAQscYSLGNTYTLLQDYEKAIDYhlkhLAIAQELKDRIGEgrACWSLGNAY 332
Cdd:COG4785   84 DSLGDYDLAIADFDQAL----ELDPDLAEAY--NNRGLAYLLLGDYDAALED----FDRALELDPDYAY--AYLNRGIAL 151

                        170       180
                 ....*....|....*....|
gi 164519124 333 TALGNHDQAMHFAEKHLEIS 352
Cdd:COG4785  152 YYLGRYELAIADLEKALELD 171
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
174-318 1.17e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 44.14  E-value: 1.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 174 VRNALQAAVDLYEENLSLVTALGDRAaqgRAFGNLGNTHYLLGNFRDAVIAHEQRLliaKEFGDKAaerRAYSNLGNAYI 253
Cdd:COG4785   48 LAAAALAAAALAAERIDRALALPDLA---QLYYERGVAYDSLGDYDLAIADFDQAL---ELDPDLA---EAYNNRGLAYL 118

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 164519124 254 FLGEFETASEYYKKTLllarQLKDRAVEAQscYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 318
Cdd:COG4785  119 LLGDYDAALEDFDRAL----ELDPDYAYAY--LNRGIALYYLGRYELAIADLEKALELDPNDPER 177
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 239-376 1.35e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.49  E-value: 1.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 239 AAERRAYSNLGNAYIFLGEFETASEYYKKtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIDYHLKHLAIAQElkdr 318
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEK----ALELDPDNPEAF--ALLGEILLQLGDLDEAIVLLHEALELDPD---- 70

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 164519124 319 igEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDksgeltARLNLSDLQMVLG 376
Cdd:COG4783   71 --EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALG 120
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 36-376 1.48e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 45.29  E-value: 1.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  36 KSGDCRAGVSFFEAAVQV-----GTEDLKTLSAiYSQLGNAYFYLHDYAKALEYHHHDLTLARTIgDQLGEA-----KAS 105
Cdd:NF040586 404 LRGDYESARDLAERALERwrerlGPDDRQTLRL-RFHLANALRSLGRYEEARELDEDTLERQRRV-LGLGEDhphtlMTA 481

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 106 GNLGNTLKVLGNFDEAivccqrhLDISRElndkvgearalynlgnVYHAKGKSFGcpgpqdtgefpEDVRNALQAAvdly 185
Cdd:NF040586 482 GGLGADLRALGRFREA-------LELDEE----------------TLERHRRVFG-----------EDHPRTLRAA---- 523

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 186 eenlslvtalgdraaqgrafGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FG-DKAAERRAYSNLGNAYIFLGEF----- 258
Cdd:NF040586 524 --------------------NNLAVSLRLLGDYREALELDREVLRRRRRvLGpDHPRTLLSANNLARDLRELGRYaeald 583

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 259 --ETASEYYKKTLLLA------RQLKDRAVeaqSCYSLGntytllqDYEKAidyhlkhLAIAQE----LKDRIGEG---- 322
Cdd:NF040586 584 llEEALERYREVLGGPdhpdtlRAAKSLAV---ALRRAG-------RLEEA-------LELAEDtyerYRRRFGPDhpdt 646

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 323 RAC-WSLGNAYTALGNHDQAMHFAEKHLEISREVGdksGE-----LTARLNLSDLQMVLG 376
Cdd:NF040586 647 LAAaLSLANDLRALGDADEARELAREVLDRYRRVL---GEdhpftLACRNNLAVLLRALG 703
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 179-267 1.56e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.52  E-value: 1.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 179 QAAVDLYEEnlsLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQrllIAKEFGDKAAERRAYSNLGNAYIFLGEF 258
Cdd:COG1729   10 DEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLELGDY 83


                 ....*....
gi 164519124 259 ETASEYYKK 267
Cdd:COG1729   84 DKARATLEE 92
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 194-352 2.40e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.25  E-value: 2.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 194 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKtlllAR 273
Cdd:COG5010    6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQ----AL 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 164519124 274 QLKDRAVEAQscYSLGNTYTLLQDYEKAIDYHLKHLAIAQelkdriGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 352
Cdd:COG5010   82 QLDPNNPELY--YNLALLYSRSGDKDEAKEYYEKALALSP------DNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR_1 pfam00515
Tetratricopeptide repeat;
243-274 3.41e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 3.41e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 164519124  243 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 274
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 212-304 3.60e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.75  E-value: 3.60e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 212 HYLLGNFRDAVIAHEQrllIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKtllLARQLKDRAVEAQSCYSLGNT 291
Cdd:COG1729    3 LLKAGDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLS 76

                         90
                 ....*....|...
gi 164519124 292 YTLLQDYEKAIDY 304
Cdd:COG1729   77 YLELGDYDKARAT 89
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 251-341 3.74e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.36  E-value: 3.74e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 251 AYIFLGEFETASEYYKKtllLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKhlaIAQELKDRIGEGRACWSLGN 330
Cdd:COG1729    2 ALLKAGDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGL 75

                         90
                 ....*....|.
gi 164519124 331 AYTALGNHDQA 341
Cdd:COG1729   76 SYLELGDYDKA 86
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 282-314 5.75e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 5.75e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 164519124   282 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 314
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 142-283 7.00e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.99  E-value: 7.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 142 ARALYNLGNVYHAKGKsfgcpgpqdtgefPEDVRNALQAAVDLYEENLSlvtalgdraaqgrAFGNLGNTHYLLGNFRDA 221
Cdd:COG4235   17 AEGWLLLGRAYLRLGR-------------YDEALAAYEKALRLDPDNAD-------------ALLDLAEALLAAGDTEEA 70

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 164519124 222 VIAHEQRLLIAKEFGdkaaerRAYSNLGNAYIFLGEFETASEYYKKTL-LLARQLKDRAVEAQ 283
Cdd:COG4235   71 EELLERALALDPDNP------EALYLLGLAAFQQGDYAEAIAAWQKLLaLLPADAPARLLEAS 127
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 243-274 7.21e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 7.21e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 164519124   243 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 274
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_1 pfam00515
Tetratricopeptide repeat;
102-131 7.26e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 7.26e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 164519124  102 AKASGNLGNTLKVLGNFDEAIVCCQRHLDI 131
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALEL 30
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 57-233 8.32e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.71  E-value: 8.32e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  57 DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREln 136
Cdd:COG5010    9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN-- 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 137 dkvgEARALYNLGNVYHAKGKsfgcpgpqdtgefpedvrnaLQAAVDLYEEnlslvtALGDRAAQGRAFGNLGNTHYLLG 216
Cdd:COG5010   87 ----NPELYYNLALLYSRSGD--------------------KDEAKEYYEK------ALALSPDNPNAYSNLAALLLSLG 136

                        170
                 ....*....|....*..
gi 164519124 217 NFRDAVIAHEQRLLIAK 233
Cdd:COG5010  137 QDDEAKAALQRALGTSP 153
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 102-134 1.24e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.66  E-value: 1.24e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 164519124   102 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 134
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 107-230 1.92e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.83  E-value: 1.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 107 NLGNTLKVLGNFDEAIVCCQRHLDISRElndkvgEARALYNLGNVYHAKGKsfgcpgpqdtgefPEDVRNALQAAVDLYE 186
Cdd:COG4235   22 LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGD-------------TEEAEELLERALALDP 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 164519124 187 ENLslvtalgdraaqgRAFGNLGNTHYLLGNFRDAvIAHEQRLL 230
Cdd:COG4235   83 DNP-------------EALYLLGLAAFQQGDYAEA-IAAWQKLL 112
COG3899 COG3899
Predicted ATPase [General function prediction only];
25-146 2.08e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 41.38  E-value: 2.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124   25 LELALE-GERLCKSGDCRAGVSFFEAAVQVGT-------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 96
Cdd:COG3899   745 LALLLElAEALYLAGRFEEAEALLERALAARAlaalaalRHGNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLG 824

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 164519124   97 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 146
Cdd:COG3899   825 DRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALA 874
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
61-269 3.13e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.51  E-value: 3.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  61 LSAIYSQLGNAYFYLHDYAKALEyhhhDLTLArtIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLdisrELNDKvg 140
Cdd:COG4785   72 LAQLYYERGVAYDSLGDYDLAIA----DFDQA--LELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRAL----ELDPD-- 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 141 EARALYNLGNVYHAKGKsfgcpgpqdtgefPEDVRNALQAAVDLYEENlslvtalgdraaqgrafgnlgnthyllgnfrd 220
Cdd:COG4785  140 YAYAYLNRGIALYYLGR-------------YELAIADLEKALELDPND-------------------------------- 174

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 164519124 221 aVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 269
Cdd:COG4785  175 -PERALWLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLAL 222
TPR_7 pfam13176
Tetratricopeptide repeat;
324-359 3.33e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.59  E-value: 3.33e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 164519124  324 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 359
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_7 pfam13176
Tetratricopeptide repeat;
244-279 3.40e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.59  E-value: 3.40e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 164519124  244 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 279
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_11 pfam13414
TPR repeat;
109-156 3.65e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.53  E-value: 3.65e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 164519124  109 GNTLKVLGNFDEAIVCCQRHLDISRELndkvgeARALYNLGNVYHAKG 156
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDN------PEAYYNLGLAYYKLG 42
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
212-315 4.24e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.07  E-value: 4.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 212 HYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYKktlllARQLKDRAVEAQscYSLGNT 291
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNAD------ALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNAEAL--LNLAEL 68

                         90       100
                 ....*....|....*....|....
gi 164519124 292 YTLLQDYEKAIDYHLKHLAIAQEL 315
Cdd:COG3063   69 LLELGDYDEALAYLERALELDPSA 92
TPR_1 pfam00515
Tetratricopeptide repeat;
282-314 4.44e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 4.44e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 164519124  282 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 314
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
71-157 5.85e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 5.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124  71 AYFYLHDYAKALEYHHHDLTLARtigdqlGEAKASGNLGNTLKVLGNFDEAIVcCQRHLDISRElndkvgEARALYNLGN 150
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDP------DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPN------NAEALLNLAE 67


                 ....*..
gi 164519124 151 VYHAKGK 157
Cdd:COG3063   68 LLLELGD 74
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
178-275 7.25e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.30  E-value: 7.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 164519124 178 LQAAVDLYEENLSLvtalgdRAAQGRAFGNLGNTHYLLGNFRDAvIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGE 257
Cdd:COG3063    8 LEEAEEYYEKALEL------DPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAE------ALLNLAELLLELGD 74

                         90
                 ....*....|....*...
gi 164519124 258 FETASEYYKKTLLLARQL 275
Cdd:COG3063   75 YDEALAYLERALELDPSA 92
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 64-94 7.65e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 7.65e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 164519124    64 IYSQLGNAYFYLHDYAKALEYHHHDLTLART 94
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_8 pfam13181
Tetratricopeptide repeat;
243-267 7.91e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 34.29  E-value: 7.91e-03
                          10        20
                  ....*....|....*....|....*
gi 164519124  243 RAYSNLGNAYIFLGEFETASEYYKK 267
Cdd:pfam13181   2 EAYYNLGLIYLKLGDYEEAKEYYEK 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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