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Conserved domains on  [gi|21312780|ref|NP_083260|]
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mitochondrial genome maintenance exonuclease 1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RecB super family cl43326
3#-5# helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) [Replication, ...
 196-291 2.48e-04

3#-5# helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];


The actual alignment was detected with superfamily member COG1074:

Pssm-ID: 440692 [Multi-domain]  Cd Length: 866  Bit Score: 43.03  E-value: 2.48e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21312780 196 EHPQCGYIESIQHILTEisgvQALESAVQHEALKYV--GLLDCVAEYRGKLCVIDWKTS---EKPKPLIRNTYDnpLQVV 270
Cdd:COG1074 763 ATPLLAELFAAAEVLRE----VPFLLPDLYRGLGGLlkGRIDLVFEDDGRVYIVDYKTNrlgPDDEEYLPERYR--LQLA 836

                        90       100
                ....*....|....*....|.
gi 21312780 271 AYMGAVnHDAHYSFQVQCGLI 291
Cdd:COG1074 837 LYALAL-ERLLPGRPVRAGLY 856
 
Name Accession Description Interval E-value
RecB COG1074
3#-5# helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) [Replication, ...
 196-291 2.48e-04

3#-5# helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];


Pssm-ID: 440692 [Multi-domain]  Cd Length: 866  Bit Score: 43.03  E-value: 2.48e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21312780 196 EHPQCGYIESIQHILTEisgvQALESAVQHEALKYV--GLLDCVAEYRGKLCVIDWKTS---EKPKPLIRNTYDnpLQVV 270
Cdd:COG1074 763 ATPLLAELFAAAEVLRE----VPFLLPDLYRGLGGLlkGRIDLVFEDDGRVYIVDYKTNrlgPDDEEYLPERYR--LQLA 836

                        90       100
                ....*....|....*....|.
gi 21312780 271 AYMGAVnHDAHYSFQVQCGLI 291
Cdd:COG1074 837 LYALAL-ERLLPGRPVRAGLY 856
 
Name Accession Description Interval E-value
RecB COG1074
3#-5# helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) [Replication, ...
 196-291 2.48e-04

3#-5# helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];


Pssm-ID: 440692 [Multi-domain]  Cd Length: 866  Bit Score: 43.03  E-value: 2.48e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21312780 196 EHPQCGYIESIQHILTEisgvQALESAVQHEALKYV--GLLDCVAEYRGKLCVIDWKTS---EKPKPLIRNTYDnpLQVV 270
Cdd:COG1074 763 ATPLLAELFAAAEVLRE----VPFLLPDLYRGLGGLlkGRIDLVFEDDGRVYIVDYKTNrlgPDDEEYLPERYR--LQLA 836

                        90       100
                ....*....|....*....|.
gi 21312780 271 AYMGAVnHDAHYSFQVQCGLI 291
Cdd:COG1074 837 LYALAL-ERLLPGRPVRAGLY 856
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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