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Conserved domains on  [gi|118130874|ref|NP_082432|]
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sperm microtubule associated protein 1 [Mus musculus]

Protein Classification

DUF4542 domain-containing protein( domain architecture ID 10633397)

DUF4542 domain-containing protein similar to Homo sapiens protein C17orf98

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4542 pfam15075
Domain of unknown function (DUF4542); This family of proteins is found in eukaryotes. Proteins ...
 12-146 6.46e-76

Domain of unknown function (DUF4542); This family of proteins is found in eukaryotes. Proteins in this family are typically between 123 and 173 amino acids in length. There is a conserved IPPYN sequence motif. The gene that encodes this protein in humans, is found in the chromosomal position, C17orf98.


:

Pssm-ID: 464487  Cd Length: 134  Bit Score: 222.25  E-value: 6.46e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118130874   12 EKSFVLDGVAVSTMAQAYSIMRPKLWSAIPPYNPQLDHHSRRYFRSRVVPPILRKTDQDHGGTGRDGWIVDYFHIFGQGQ 91
Cdd:pfam15075   1 EKGFVLDCIAVSTIASDYRRTRPKLGSAIPPYNAQKDKHAQAYFRSPTVPDVLRKTGQDEGGTSIDGKVVDKFHIRGEGA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 118130874   92 RYLNRRNWAGAGHSLQQVSGHDYYNSNPKAItTGLNGRFGYRRNTPALRQHTSVF 146
Cdd:pfam15075  81 HYLSRRNQAGAGYSREQVGGHAQFMSNVKPM-VGYNGRFGYRRNTPLLRQTPSVF 134
 
Name Accession Description Interval E-value
DUF4542 pfam15075
Domain of unknown function (DUF4542); This family of proteins is found in eukaryotes. Proteins ...
 12-146 6.46e-76

Domain of unknown function (DUF4542); This family of proteins is found in eukaryotes. Proteins in this family are typically between 123 and 173 amino acids in length. There is a conserved IPPYN sequence motif. The gene that encodes this protein in humans, is found in the chromosomal position, C17orf98.


Pssm-ID: 464487  Cd Length: 134  Bit Score: 222.25  E-value: 6.46e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118130874   12 EKSFVLDGVAVSTMAQAYSIMRPKLWSAIPPYNPQLDHHSRRYFRSRVVPPILRKTDQDHGGTGRDGWIVDYFHIFGQGQ 91
Cdd:pfam15075   1 EKGFVLDCIAVSTIASDYRRTRPKLGSAIPPYNAQKDKHAQAYFRSPTVPDVLRKTGQDEGGTSIDGKVVDKFHIRGEGA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 118130874   92 RYLNRRNWAGAGHSLQQVSGHDYYNSNPKAItTGLNGRFGYRRNTPALRQHTSVF 146
Cdd:pfam15075  81 HYLSRRNQAGAGYSREQVGGHAQFMSNVKPM-VGYNGRFGYRRNTPLLRQTPSVF 134
 
Name Accession Description Interval E-value
DUF4542 pfam15075
Domain of unknown function (DUF4542); This family of proteins is found in eukaryotes. Proteins ...
 12-146 6.46e-76

Domain of unknown function (DUF4542); This family of proteins is found in eukaryotes. Proteins in this family are typically between 123 and 173 amino acids in length. There is a conserved IPPYN sequence motif. The gene that encodes this protein in humans, is found in the chromosomal position, C17orf98.


Pssm-ID: 464487  Cd Length: 134  Bit Score: 222.25  E-value: 6.46e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118130874   12 EKSFVLDGVAVSTMAQAYSIMRPKLWSAIPPYNPQLDHHSRRYFRSRVVPPILRKTDQDHGGTGRDGWIVDYFHIFGQGQ 91
Cdd:pfam15075   1 EKGFVLDCIAVSTIASDYRRTRPKLGSAIPPYNAQKDKHAQAYFRSPTVPDVLRKTGQDEGGTSIDGKVVDKFHIRGEGA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 118130874   92 RYLNRRNWAGAGHSLQQVSGHDYYNSNPKAItTGLNGRFGYRRNTPALRQHTSVF 146
Cdd:pfam15075  81 HYLSRRNQAGAGYSREQVGGHAQFMSNVKPM-VGYNGRFGYRRNTPLLRQTPSVF 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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