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Conserved domains on  [gi|33636683|ref|NP_081597|]
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leucine-rich repeat-containing protein 39 isoform 1 [Mus musculus]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11469232)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
73-175 7.63e-23

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 93.46  E-value: 7.63e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33636683  73 KTLPSSLLKLNQLQEWQLHRTGLLKIPEFIGRFQHLIVLDLSRNTISEIPRGIGLLTRLQELILSYNKIKTVPKELSNCT 152
Cdd:COG4886 126 TDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITDLPEPLGNLT 205

                        90       100
                ....*....|....*....|...
gi 33636683 153 SLEKLELAVNRdISDLPPEVRKM 175
Cdd:COG4886 206 NLEELDLSGNQ-LTDLPEPLANL 227
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
73-175 7.63e-23

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 93.46  E-value: 7.63e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33636683  73 KTLPSSLLKLNQLQEWQLHRTGLLKIPEFIGRFQHLIVLDLSRNTISEIPRGIGLLTRLQELILSYNKIKTVPKELSNCT 152
Cdd:COG4886 126 TDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITDLPEPLGNLT 205

                        90       100
                ....*....|....*....|...
gi 33636683 153 SLEKLELAVNRdISDLPPEVRKM 175
Cdd:COG4886 206 NLEELDLSGNQ-LTDLPEPLANL 227
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 77-175 3.77e-11

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 60.63  E-value: 3.77e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33636683   77 SSLLKLNQLQEWQLHRTGllKIPEFIGRFQHLIVLDLSRNTIS-EIPRGIGLLTRLQELILSYNKIKT-VPKELSNCTSL 154
Cdd:PLN00113 329 TSLPRLQVLQLWSNKFSG--EIPKNLGKHNNLTVLDLSTNNLTgEIPEGLCSSGNLFKLILFSNSLEGeIPKSLGACRSL 406

                         90       100
                 ....*....|....*....|.
gi 33636683  155 EKLELAVNRDISDLPPEVRKM 175
Cdd:PLN00113 407 RRVRLQDNSFSGELPSEFTKL 427
LRR_8 pfam13855
Leucine rich repeat;
84-141 2.82e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 42.90  E-value: 2.82e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 33636683    84 QLQEWQLHRTGLLKI-PEFIGRFQHLIVLDLSRNTISEI-PRGIGLLTRLQELILSYNKI 141
Cdd:pfam13855   2 NLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 108-162 9.46e-05

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 41.31  E-value: 9.46e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 33636683 108 LIVLDLSRNTISEIpRGIGLLTRLQELILSYNKI---KTVPKELSNCTSLEKLELAVN 162
Cdd:cd21340 122 LRVLNISGNNIDSL-EPLAPLRNLEQLDASNNQIsdlEELLDLLSSWPSLRELDLTGN 178
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
73-175 7.63e-23

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 93.46  E-value: 7.63e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33636683  73 KTLPSSLLKLNQLQEWQLHRTGLLKIPEFIGRFQHLIVLDLSRNTISEIPRGIGLLTRLQELILSYNKIKTVPKELSNCT 152
Cdd:COG4886 126 TDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITDLPEPLGNLT 205

                        90       100
                ....*....|....*....|...
gi 33636683 153 SLEKLELAVNRdISDLPPEVRKM 175
Cdd:COG4886 206 NLEELDLSGNQ-LTDLPEPLANL 227
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
73-169 1.35e-20

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 87.30  E-value: 1.35e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33636683  73 KTLPSSLLKLNQLQEWQLHRTGLLKIPEFIGRFQHLIVLDLSRNTISEIPRGIGLLTRLQELILSYNKIKTVPKELSNCT 152
Cdd:COG4886 149 TDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLT 228

                        90
                ....*....|....*..
gi 33636683 153 SLEKLELAVNRdISDLP 169
Cdd:COG4886 229 NLETLDLSNNQ-LTDLP 244
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
76-175 3.47e-20

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 86.14  E-value: 3.47e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33636683  76 PSSLLKLNQLQEWQLHRTGLLKIPEFIGRFQHLIVLDLSRNTISEIPRGIGLLTRLQELILSYNKIKTVPKELSNCTSLE 155
Cdd:COG4886 106 NEELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLK 185

                        90       100
                ....*....|....*....|
gi 33636683 156 KLELAVNRdISDLPPEVRKM 175
Cdd:COG4886 186 ELDLSNNQ-ITDLPEPLGNL 204
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
74-175 5.27e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 74.58  E-value: 5.27e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33636683  74 TLPSSLLKLNQLQEWQLHRTGLLKIPEFIGRFQHLIVLDLSRNTISEIPRGIGLLTRLQELILSYNKIKTVPKELSNCTS 153
Cdd:COG4886  81 LLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTN 160

                        90       100
                ....*....|....*....|..
gi 33636683 154 LEKLELAVNRdISDLPPEVRKM 175
Cdd:COG4886 161 LKSLDLSNNQ-LTDLPEELGNL 181
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
73-168 3.67e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 69.19  E-value: 3.67e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33636683  73 KTLPSSLLKLNQLQEWQLHRTGLLKIPEFIGRFQHLIVLDLSRNTISEIPrGIGLLTRLQELILSYNKIKTVPkELSNCT 152
Cdd:COG4886 195 TDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLP-ELGNLTNLEELDLSNNQLTDLP-PLANLT 272

                        90
                ....*....|....*.
gi 33636683 153 SLEKLELAVNRdISDL 168
Cdd:COG4886 273 NLKTLDLSNNQ-LTDL 287
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 77-175 3.77e-11

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 60.63  E-value: 3.77e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33636683   77 SSLLKLNQLQEWQLHRTGllKIPEFIGRFQHLIVLDLSRNTIS-EIPRGIGLLTRLQELILSYNKIKT-VPKELSNCTSL 154
Cdd:PLN00113 329 TSLPRLQVLQLWSNKFSG--EIPKNLGKHNNLTVLDLSTNNLTgEIPEGLCSSGNLFKLILFSNSLEGeIPKSLGACRSL 406

                         90       100
                 ....*....|....*....|.
gi 33636683  155 EKLELAVNRDISDLPPEVRKM 175
Cdd:PLN00113 407 RRVRLQDNSFSGELPSEFTKL 427
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 66-175 9.02e-09

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 53.70  E-value: 9.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33636683   66 RIEKEEWKtlpssllkLNQLQEWQLHRTGLL-KIPEFIGRfQHLIVLDLSRNTISE-IPRGIGLLTRLQELILSYNKIK- 142
Cdd:PLN00113 443 RINSRKWD--------MPSLQMLSLARNKFFgGLPDSFGS-KRLENLDLSRNQFSGaVPRKLGSLSELMQLKLSENKLSg 513

                         90       100       110
                 ....*....|....*....|....*....|...
gi 33636683  143 TVPKELSNCTSLEKLELAVNRDISDLPPEVRKM 175
Cdd:PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546
PLN03150 PLN03150
hypothetical protein; Provisional
 98-172 4.54e-08

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 51.74  E-value: 4.54e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 33636683   98 IPEFIGRFQHLIVLDLSRNTI-SEIPRGIGLLTRLQELILSYNKIK-TVPKELSNCTSLEKLELAVNRDISDLPPEV 172
Cdd:PLN03150 434 IPNDISKLRHLQSINLSGNSIrGNIPPSLGSITSLEVLDLSYNSFNgSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
3-169 1.16e-07

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 50.47  E-value: 1.16e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33636683    3 ESAVCTGAVSAVKE--VWEERIKKH--HEDVKREKEFQ-------HKLVRIWEDRVSLTKLKEKVTREDGRVILriEKEE 71
Cdd:PRK15370 133 QASSASGSKDAVNYelIWSEWVKEApaKEAANREEAVQrmrdclkNNKTELRLKILGLTTIPACIPEQITTLIL--DNNE 210

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33636683   72 WKTLPSSLLklNQLQEWQLHRTGLLKIPEFIGrfQHLIVLDLSRNTISEIPRGigLLTRLQELILSYNKIKTVPKELSNc 151
Cdd:PRK15370 211 LKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPER--LPSALQSLDLFHNKISCLPENLPE- 283

                        170
                 ....*....|....*...
gi 33636683  152 tSLEKLELAVNrDISDLP 169
Cdd:PRK15370 284 -ELRYLSVYDN-SIRTLP 299
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 103-175 6.30e-07

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 48.31  E-value: 6.30e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 33636683  103 GRFQHLIVLDLSRNTIS-EIPRGIGLLTRLQELILSYNKIK-TVPKELSNCTSLEKLELAVNRDISDLPPEVRKM 175
Cdd:PLN00113 137 GSIPNLETLDLSNNMLSgEIPNDIGSFSSLKVLDLGGNVLVgKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 75-172 1.88e-06

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 46.76  E-value: 1.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33636683   75 LPSSLLKLNQLQEWQLHRTGLL-KIPEFIGRFQHLIVLDLSRNTIS-EIPRGIGLLTRLQELILSYNKIK-TVPKELSNC 151
Cdd:PLN00113 180 IPNSLTNLTSLEFLTLASNQLVgQIPRELGQMKSLKWIYLGYNNLSgEIPYEIGGLTSLNHLDLVYNNLTgPIPSSLGNL 259

                         90       100
                 ....*....|....*....|.
gi 33636683  152 TSLEKLELAVNRDISDLPPEV 172
Cdd:PLN00113 260 KNLQYLFLYQNKLSGPIPPSI 280
LRR_8 pfam13855
Leucine rich repeat;
84-141 2.82e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 42.90  E-value: 2.82e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 33636683    84 QLQEWQLHRTGLLKI-PEFIGRFQHLIVLDLSRNTISEI-PRGIGLLTRLQELILSYNKI 141
Cdd:pfam13855   2 NLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
106-163 6.70e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 41.74  E-value: 6.70e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 33636683   106 QHLIVLDLSRNTISEIPRGIGL-LTRLQELILSYNKIKTV-PKELSNCTSLEKLELAVNR 163
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKgLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNR 60
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 75-174 7.67e-06

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 45.22  E-value: 7.67e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33636683   75 LPSSLLKLNQLQEWQLHRTGLL-KIPEFIGRFQHLIVLDLSRNTIS-EIPRGIGLLTRLQELILSYNKIK-TVPKELSNC 151
Cdd:PLN00113 252 IPSSLGNLKNLQYLFLYQNKLSgPIPPSIFSLQKLISLDLSDNSLSgEIPELVIQLQNLEILHLFSNNFTgKIPVALTSL 331

                         90       100
                 ....*....|....*....|...
gi 33636683  152 TSLEKLELAVNRDISDLPPEVRK 174
Cdd:PLN00113 332 PRLQVLQLWSNKFSGEIPKNLGK 354
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 129-170 3.54e-05

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 39.54  E-value: 3.54e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 33636683   129 TRLQELILSYNKIKTVPkELSNCTSLEKLELAVNRDISDLPP 170
Cdd:pfam12799   1 PNLEVLDLSNNQITDIP-PLAKLPNLETLDLSGNNKITDLSD 41
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 108-162 9.46e-05

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 41.31  E-value: 9.46e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 33636683 108 LIVLDLSRNTISEIpRGIGLLTRLQELILSYNKI---KTVPKELSNCTSLEKLELAVN 162
Cdd:cd21340 122 LRVLNISGNNIDSL-EPLAPLRNLEQLDASNNQIsdlEELLDLLSSWPSLRELDLTGN 178
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 100-157 1.16e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 40.92  E-value: 1.16e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 33636683 100 EFIGRFQHLIVLDLSRNTISEIPrGIGLLTRLQELILSYNKIKTVpKELSNCTSLEKL 157
Cdd:cd21340  40 ENLEFLTNLTHLYLQNNQIEKIE-NLENLVNLKKLYLGGNRISVV-EGLENLTNLEEL 95
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 90-163 4.15e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 36.30  E-value: 4.15e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33636683  90 LHRTGLLKIPEFIgRFQHLIVLDLSRNTISEIPrGIGLLTRLQELILSYNKIKTVPkELSNCTSLEKLELAVNR 163
Cdd:cd21340   9 LNDKNITKIDNLS-LCKNLKVLYLYDNKITKIE-NLEFLTNLTHLYLQNNQIEKIE-NLENLVNLKKLYLGGNR 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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