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Conserved domains on  [gi|21624617|ref|NP_081018|]
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NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4 [Mus musculus]

Protein Classification

NDUFAF4 family protein( domain architecture ID 10536070)

NDUFAF4 family protein similar to mammalian NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4 (NDUFAF4) that is involved in the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UPF0240 pfam06784
Uncharacterized protein family (UPF0240);
1-165 1.49e-66

Uncharacterized protein family (UPF0240);


:

Pssm-ID: 462009  Cd Length: 171  Bit Score: 200.61  E-value: 1.49e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21624617     1 MGA---RVTRALRNFNVEKRAEREISKRKPSMAPKHPSTRDLLQEHRSQYPEIEEVVSKKDNKLLSLLRDVYVDSKDPVP 77
Cdd:pfam06784   1 MGAvvsRVTRPIRNFNVENRAHRVISKEKPKPAPKHPSTQKDLERVLSEHPEIKEELNRKDEQLLSRLKDVYVTSHDPVA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21624617    78 ALPvkvEPRQEPKEFRLPIGNH------FD-KNITDIPKGKITVVEALTLLNNHKLSPETWTAEKIAQEYYLELKDVNSL 150
Cdd:pfam06784  81 DPE---QEIKQSSERRLPKNRSkvedfeFGyLEPETVPKGKITLRQALELLSNHQTDPQKWTAEKIAQEYKLEEKDVKNL 157

                         170
                  ....*....|....*
gi 21624617   151 LKYFVTFEVKIlPPE 165
Cdd:pfam06784 158 LKYFKPFEVYI-PEK 171
 
Name Accession Description Interval E-value
UPF0240 pfam06784
Uncharacterized protein family (UPF0240);
1-165 1.49e-66

Uncharacterized protein family (UPF0240);


Pssm-ID: 462009  Cd Length: 171  Bit Score: 200.61  E-value: 1.49e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21624617     1 MGA---RVTRALRNFNVEKRAEREISKRKPSMAPKHPSTRDLLQEHRSQYPEIEEVVSKKDNKLLSLLRDVYVDSKDPVP 77
Cdd:pfam06784   1 MGAvvsRVTRPIRNFNVENRAHRVISKEKPKPAPKHPSTQKDLERVLSEHPEIKEELNRKDEQLLSRLKDVYVTSHDPVA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21624617    78 ALPvkvEPRQEPKEFRLPIGNH------FD-KNITDIPKGKITVVEALTLLNNHKLSPETWTAEKIAQEYYLELKDVNSL 150
Cdd:pfam06784  81 DPE---QEIKQSSERRLPKNRSkvedfeFGyLEPETVPKGKITLRQALELLSNHQTDPQKWTAEKIAQEYKLEEKDVKNL 157

                         170
                  ....*....|....*
gi 21624617   151 LKYFVTFEVKIlPPE 165
Cdd:pfam06784 158 LKYFKPFEVYI-PEK 171
 
Name Accession Description Interval E-value
UPF0240 pfam06784
Uncharacterized protein family (UPF0240);
1-165 1.49e-66

Uncharacterized protein family (UPF0240);


Pssm-ID: 462009  Cd Length: 171  Bit Score: 200.61  E-value: 1.49e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21624617     1 MGA---RVTRALRNFNVEKRAEREISKRKPSMAPKHPSTRDLLQEHRSQYPEIEEVVSKKDNKLLSLLRDVYVDSKDPVP 77
Cdd:pfam06784   1 MGAvvsRVTRPIRNFNVENRAHRVISKEKPKPAPKHPSTQKDLERVLSEHPEIKEELNRKDEQLLSRLKDVYVTSHDPVA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21624617    78 ALPvkvEPRQEPKEFRLPIGNH------FD-KNITDIPKGKITVVEALTLLNNHKLSPETWTAEKIAQEYYLELKDVNSL 150
Cdd:pfam06784  81 DPE---QEIKQSSERRLPKNRSkvedfeFGyLEPETVPKGKITLRQALELLSNHQTDPQKWTAEKIAQEYKLEEKDVKNL 157

                         170
                  ....*....|....*
gi 21624617   151 LKYFVTFEVKIlPPE 165
Cdd:pfam06784 158 LKYFKPFEVYI-PEK 171
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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