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Conserved domains on  [gi|13385320|ref|NP_080118|]
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vacuolar protein sorting-associated protein 28 homolog isoform 1 [Mus musculus]

Protein Classification

ESCRT-I complex subunit VPS28( domain architecture ID 10512640)

ESCRT-I complex subunit VPS28 (vacuolar protein sorting-associated protein 28) is a component of the endosomal sorting complex required for transport I, which is a regulator of vesicular trafficking processes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VPS28 pfam03997
VPS28 protein;
39-219 3.70e-101

VPS28 protein;


:

Pssm-ID: 427639  Cd Length: 187  Bit Score: 290.95  E-value: 3.70e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13385320    39 MAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITI 118
Cdd:pfam03997   1 LAELYSIIVTLEHLEKAYIKDSITAKEYTSTCSRLLAQYKTILDELVKDEFPDLEEFMKKYRLDCPAALERLREGVPATV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13385320   119 KD------DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSA 192
Cdd:pfam03997  81 EHsasssaDGGNSAKLVAEATQNFITLMDALKLNYRAKDQLHPLLSDLLQSLNKLSLLPPDFEGKSKLVKWLIKLNNMKA 160

                         170       180
                  ....*....|....*....|....*..
gi 13385320   193 SDELDDSQVRQMLFDLESAYNAFNRFL 219
Cdd:pfam03997 161 SDELSEEQARQLLFDLESAYNAFYRSL 187
 
Name Accession Description Interval E-value
VPS28 pfam03997
VPS28 protein;
39-219 3.70e-101

VPS28 protein;


Pssm-ID: 427639  Cd Length: 187  Bit Score: 290.95  E-value: 3.70e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13385320    39 MAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITI 118
Cdd:pfam03997   1 LAELYSIIVTLEHLEKAYIKDSITAKEYTSTCSRLLAQYKTILDELVKDEFPDLEEFMKKYRLDCPAALERLREGVPATV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13385320   119 KD------DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSA 192
Cdd:pfam03997  81 EHsasssaDGGNSAKLVAEATQNFITLMDALKLNYRAKDQLHPLLSDLLQSLNKLSLLPPDFEGKSKLVKWLIKLNNMKA 160

                         170       180
                  ....*....|....*....|....*..
gi 13385320   193 SDELDDSQVRQMLFDLESAYNAFNRFL 219
Cdd:pfam03997 161 SDELSEEQARQLLFDLESAYNAFYRSL 187
 
Name Accession Description Interval E-value
VPS28 pfam03997
VPS28 protein;
39-219 3.70e-101

VPS28 protein;


Pssm-ID: 427639  Cd Length: 187  Bit Score: 290.95  E-value: 3.70e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13385320    39 MAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITI 118
Cdd:pfam03997   1 LAELYSIIVTLEHLEKAYIKDSITAKEYTSTCSRLLAQYKTILDELVKDEFPDLEEFMKKYRLDCPAALERLREGVPATV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13385320   119 KD------DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSA 192
Cdd:pfam03997  81 EHsasssaDGGNSAKLVAEATQNFITLMDALKLNYRAKDQLHPLLSDLLQSLNKLSLLPPDFEGKSKLVKWLIKLNNMKA 160

                         170       180
                  ....*....|....*....|....*..
gi 13385320   193 SDELDDSQVRQMLFDLESAYNAFNRFL 219
Cdd:pfam03997 161 SDELSEEQARQLLFDLESAYNAFYRSL 187
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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