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Conserved domains on  [gi|23956140|ref|NP_079914|]
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lysophospholipase D GDPD1 [Mus musculus]

Protein Classification

glycerophosphodiester phosphodiesterase family protein( domain architecture ID 10171264)

glycerophosphodiester phosphodiesterase (GDPD) family protein similar to Homo sapiens lysophospholipase D GDPD1/GDE4 and GDPD3/GDE7, which hydrolyze lysoglycerophospholipids to produce lysophosphatidic acid (LPA) and the corresponding amines glycerophosphodiester phosphodiesterase 1

CATH:  3.20.20.190
EC:  3.1.4.-
Gene Ontology:  GO:0008081|GO:0006629|GO:0046872|GO:0004622
SCOP:  4000418

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GDPD_GDE4 cd08612
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 14-311 0e+00

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.


:

Pssm-ID: 176553 [Multi-domain]  Cd Length: 300  Bit Score: 515.61  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  14 GGYLVTSFLLLKYPALLHQRKKQRFLSRHISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKR 93
Cdd:cd08612   1 GGYIATSYFLLRNPTLLHKKKKSPFPCRHISHRGGSGENLENTMEAFEHAVKVGTDMLELDVHLTKDGQVVVSHDENLLR 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  94 STGVNVNVSDLKYCELPPYLCKLDVPFQRACKC--EGKDTRIPLLKEVFEAFPETPINIDIKVNNNVLIKKVSELVKQYK 171
Cdd:cd08612  81 SCGVDKLVSDLNYADLPPYLEKLEVTFSPGDYCvpKGSDRRIPLLEEVFEAFPDTPINIDIKVENDELIKKVSDLVRKYK 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 172 REHLTVWGNANSEIVDKCYKENSDIPILFSLQRVLLILGLFFTGLLPFVPIREQFFEIPMPSIILKLKEPHTISKGHKFL 251
Cdd:cd08612 161 REDITVWGSFNDEIVKKCHKENPNIPLFFSLKRVLLLLLLYYTGLLPFIPIKESFLEIPMPSIFLKTYFPKSMSRLNRFV 240

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 252 IWLSDTLLMRKALFDHLTARGIQVYVWVLNEEYEYKRAFDLGATGVMTDYPTKLKDFLNN 311
Cdd:cd08612 241 LFLIDWLLMRPSLFRHLQKRGIQVYGWVLNDEEEFERAFELGADGVMTDYPTKLREFLDK 300
 
Name Accession Description Interval E-value
GDPD_GDE4 cd08612
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 14-311 0e+00

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.


Pssm-ID: 176553 [Multi-domain]  Cd Length: 300  Bit Score: 515.61  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  14 GGYLVTSFLLLKYPALLHQRKKQRFLSRHISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKR 93
Cdd:cd08612   1 GGYIATSYFLLRNPTLLHKKKKSPFPCRHISHRGGSGENLENTMEAFEHAVKVGTDMLELDVHLTKDGQVVVSHDENLLR 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  94 STGVNVNVSDLKYCELPPYLCKLDVPFQRACKC--EGKDTRIPLLKEVFEAFPETPINIDIKVNNNVLIKKVSELVKQYK 171
Cdd:cd08612  81 SCGVDKLVSDLNYADLPPYLEKLEVTFSPGDYCvpKGSDRRIPLLEEVFEAFPDTPINIDIKVENDELIKKVSDLVRKYK 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 172 REHLTVWGNANSEIVDKCYKENSDIPILFSLQRVLLILGLFFTGLLPFVPIREQFFEIPMPSIILKLKEPHTISKGHKFL 251
Cdd:cd08612 161 REDITVWGSFNDEIVKKCHKENPNIPLFFSLKRVLLLLLLYYTGLLPFIPIKESFLEIPMPSIFLKTYFPKSMSRLNRFV 240

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 252 IWLSDTLLMRKALFDHLTARGIQVYVWVLNEEYEYKRAFDLGATGVMTDYPTKLKDFLNN 311
Cdd:cd08612 241 LFLIDWLLMRPSLFRHLQKRGIQVYGWVLNDEEEFERAFELGADGVMTDYPTKLREFLDK 300
UgpQ COG0584
Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism];
43-310 2.37e-53

Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism];


Pssm-ID: 440349 [Multi-domain]  Cd Length: 238  Bit Score: 174.67  E-value: 2.37e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCElppyLCKLDVPFQR 122
Cdd:COG0584   6 IAHRGASGLAPENTLAAFRAALELGADGIELDVQLTKDGVLVVFHDPTLDRTTNGTGRVADLTLAE----LRQLDAGSGP 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 123 ackcEGKDTRIPLLKEVFEAFP-ETPINIDIKVNNNV---LIKKVSELVKQYKREHLTVWGNANSEIVDKCYKENSDIPi 198
Cdd:COG0584  82 ----DFAGERIPTLEEVLELVPgDVGLNIEIKSPPAAepdLAEAVAALLKRYGLEDRVIVSSFDPEALRRLRELAPDVP- 156

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 199 lfslqRVLLILGLfftgllpfvpireqffeipmpsiilkLKEPHTISKGHKFLIWLSDTLLMRKALFDHLTARGIQVYVW 278
Cdd:COG0584 157 -----LGLLVEEL--------------------------PADPLELARALGADGVGPDYDLLTPELVAAAHAAGLKVHVW 205

                       250       260       270
                ....*....|....*....|....*....|..
gi 23956140 279 VLNEEYEYKRAFDLGATGVMTDYPTKLKDFLN 310
Cdd:COG0584 206 TVNDPEEMRRLLDLGVDGIITDRPDLLRAVLR 237
GDPD pfam03009
Glycerophosphoryl diester phosphodiesterase family; E. coli has two sequence related isozymes ...
 45-302 5.47e-35

Glycerophosphoryl diester phosphodiesterase family; E. coli has two sequence related isozymes of glycerophosphoryl diester phosphodiesterase (GDPD) - periplasmic and cytosolic. This family also includes agrocinopine synthase, the similarity to GDPD has been noted. This family appears to have weak but not significant matches to mammalian phospholipase C pfam00388, which suggests that this family may adopt a TIM barrel fold.


Pssm-ID: 397241 [Multi-domain]  Cd Length: 244  Bit Score: 127.13  E-value: 5.47e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140    45 HRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCELPpylcKLDVPFQRAC 124
Cdd:pfam03009   1 HRGASGSYPENTLASFRKAAEAGADYIEFDVQLTKDGVPVVLHDFNLDRTTDGAGYVRDLTLEELK----RLDIGAGNSG 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140   125 KCEGKDTRIPLLKEVFEAFPETPINIDIKVnnnvlikkvsELVKQYKREHLTVWGNANSEIVDKCYKENSD-IPILFSLQ 203
Cdd:pfam03009  77 PLSGERVPFPTLEEVLEFDWDVGFNIEIKI----------KPYVEAIAPEEGLIVKDLLLSVDEILAKKADpRRVIFSSF 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140   204 RVLLILGLffTGLLPFVPIREQFFEIPMpsiilklKEPHTISKGHKFL--------IWLSDTLLMRkaLFDHLTARGIQV 275
Cdd:pfam03009 147 NPDELKRL--RELAPKLPLVFLSSGRAY-------AEADLLERAAAFAgapallgeVALVDEALPD--LVKRAHARGLVV 215

                         250       260
                  ....*....|....*....|....*..
gi 23956140   276 YVWVLNEEYEYKRAFDLGATGVMTDYP 302
Cdd:pfam03009 216 HVWTVNNEDEMKRLLELGVDGVITDRP 242
ugpQ PRK09454
cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
 39-139 1.65e-08

cytoplasmic glycerophosphodiester phosphodiesterase; Provisional


Pssm-ID: 236524 [Multi-domain]  Cd Length: 249  Bit Score: 54.56  E-value: 1.65e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140   39 LSRHISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRST-GVNVnVSDLKYCElppyLCKLD 117
Cdd:PRK09454   7 YPRIVAHRGGGKLAPENTLAAIDVGARYGHRMIEFDAKLSADGEIFLLHDDTLERTSnGWGV-AGELTWQD----LAQLD 81

                         90       100
                 ....*....|....*....|....
gi 23956140  118 VP--FQRACKCEgkdtRIPLLKEV 139
Cdd:PRK09454  82 AGswFSAAFAGE----PLPTLSQV 101
 
Name Accession Description Interval E-value
GDPD_GDE4 cd08612
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 14-311 0e+00

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.


Pssm-ID: 176553 [Multi-domain]  Cd Length: 300  Bit Score: 515.61  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  14 GGYLVTSFLLLKYPALLHQRKKQRFLSRHISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKR 93
Cdd:cd08612   1 GGYIATSYFLLRNPTLLHKKKKSPFPCRHISHRGGSGENLENTMEAFEHAVKVGTDMLELDVHLTKDGQVVVSHDENLLR 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  94 STGVNVNVSDLKYCELPPYLCKLDVPFQRACKC--EGKDTRIPLLKEVFEAFPETPINIDIKVNNNVLIKKVSELVKQYK 171
Cdd:cd08612  81 SCGVDKLVSDLNYADLPPYLEKLEVTFSPGDYCvpKGSDRRIPLLEEVFEAFPDTPINIDIKVENDELIKKVSDLVRKYK 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 172 REHLTVWGNANSEIVDKCYKENSDIPILFSLQRVLLILGLFFTGLLPFVPIREQFFEIPMPSIILKLKEPHTISKGHKFL 251
Cdd:cd08612 161 REDITVWGSFNDEIVKKCHKENPNIPLFFSLKRVLLLLLLYYTGLLPFIPIKESFLEIPMPSIFLKTYFPKSMSRLNRFV 240

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 252 IWLSDTLLMRKALFDHLTARGIQVYVWVLNEEYEYKRAFDLGATGVMTDYPTKLKDFLNN 311
Cdd:cd08612 241 LFLIDWLLMRPSLFRHLQKRGIQVYGWVLNDEEEFERAFELGADGVMTDYPTKLREFLDK 300
GDPD_GDE4_like cd08575
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 41-305 3.57e-140

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.


Pssm-ID: 176517 [Multi-domain]  Cd Length: 264  Bit Score: 396.59  E-value: 3.57e-140
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  41 RHISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCELPPYLCKLDVPF 120
Cdd:cd08575   2 LHIAHRGGAAEFPENTIAAFRHAVKNGADMLELDVQLTKDGQVVVFHDWDLDRLTGGSGLVSDLTYAELPPLDAGYGYTF 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 121 QRA---CKCEGKDTRIPLLKEVFEAFPETPINIDIKVNN-NVLIKKVSELVKQYKREHLTVWGNANSEIVDKCYKENSDI 196
Cdd:cd08575  82 DGGktgYPRGGGDGRIPTLEEVFKAFPDTPINIDIKSPDaEELIAAVLDLLEKYKREDRTVWGSTNPEYLRALHPENPNL 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 197 PILFSLQRVLL-ILGLFFTGLLPFVPIREQFFEIPMPSIILKLKEPhtiskghKFLIWLSDTLLMRKALFDHLTARGIQV 275
Cdd:cd08575 162 FESFSMTRCLLlYLALGYTGLLPFVPIKESFFEIPRPVIVLETFTL-------GEGASIVAALLWWPNLFDHLRKRGIQV 234

                       250       260       270
                ....*....|....*....|....*....|
gi 23956140 276 YVWVLNEEYEYKRAFDLGATGVMTDYPTKL 305
Cdd:cd08575 235 YLWVLNDEEDFEEAFDLGADGVMTDSPTKL 264
GDPD_cytoplasmic_ScUgpQ2_like cd08561
Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic ...
 42-309 5.93e-56

Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176504 [Multi-domain]  Cd Length: 249  Bit Score: 181.69  E-value: 5.93e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  42 HISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCELPpylcKLDVPF- 120
Cdd:cd08561   1 VIAHRGGAGLAPENTLLAFEDAVELGADVLETDVHATKDGVLVVIHDETLDRTTDGTGPVADLTLAELR----RLDAGYh 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 121 -----QRACKCEGKDTRIPLLKEVFEAFPETPINIDIKVNNNVLIKKVSELVKQYKREHLTVWGNANSEIVDKCYKENSD 195
Cdd:cd08561  77 ftddgGRTYPYRGQGIRIPTLEELFEAFPDVRLNIEIKDDGPAAAAALADLIERYGAQDRVLVASFSDRVLRRFRRLCPR 156

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 196 IPILFSLQRVLLILGLFFTGLLPFVPIREQFFEIPMPSIILKLKEPHTISKGHkfliwlsdtllmrkalfdhltARGIQV 275
Cdd:cd08561 157 VATSAGEGEVAAFVLASRLGLGSLYSPPYDALQIPVRYGGVPLVTPRFVRAAH---------------------AAGLEV 215

                       250       260       270
                ....*....|....*....|....*....|....
gi 23956140 276 YVWVLNEEYEYKRAFDLGATGVMTDYPTKLKDFL 309
Cdd:cd08561 216 HVWTVNDPAEMRRLLDLGVDGIITDRPDLLLEVL 249
UgpQ COG0584
Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism];
43-310 2.37e-53

Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism];


Pssm-ID: 440349 [Multi-domain]  Cd Length: 238  Bit Score: 174.67  E-value: 2.37e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCElppyLCKLDVPFQR 122
Cdd:COG0584   6 IAHRGASGLAPENTLAAFRAALELGADGIELDVQLTKDGVLVVFHDPTLDRTTNGTGRVADLTLAE----LRQLDAGSGP 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 123 ackcEGKDTRIPLLKEVFEAFP-ETPINIDIKVNNNV---LIKKVSELVKQYKREHLTVWGNANSEIVDKCYKENSDIPi 198
Cdd:COG0584  82 ----DFAGERIPTLEEVLELVPgDVGLNIEIKSPPAAepdLAEAVAALLKRYGLEDRVIVSSFDPEALRRLRELAPDVP- 156

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 199 lfslqRVLLILGLfftgllpfvpireqffeipmpsiilkLKEPHTISKGHKFLIWLSDTLLMRKALFDHLTARGIQVYVW 278
Cdd:COG0584 157 -----LGLLVEEL--------------------------PADPLELARALGADGVGPDYDLLTPELVAAAHAAGLKVHVW 205

                       250       260       270
                ....*....|....*....|....*....|..
gi 23956140 279 VLNEEYEYKRAFDLGATGVMTDYPTKLKDFLN 310
Cdd:COG0584 206 TVNDPEEMRRLLDLGVDGIITDRPDLLRAVLR 237
GDPD cd08556
Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and ...
 43-301 3.02e-36

Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins; The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols are major sources of carbon and phosphate. Its catalytic mechanism is based on the metal ion-dependent acid-base reaction, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). Both, GDPD related proteins and PI-PLCs, belong to the superfamily of PI-PLC-like phosphodiesterases.


Pssm-ID: 176499 [Multi-domain]  Cd Length: 189  Bit Score: 128.92  E-value: 3.02e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDanlkrstgvnvnvsdlkycelppylckldvpfqr 122
Cdd:cd08556   2 IAHRGASGEAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHD---------------------------------- 47

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 123 ackcegkdtrIPLLKEVFEAFPE-TPINIDIKVNN--NVLIKKVSELVKQYKREHLTVWGNANSEIVDKCYKENSDIPIl 199
Cdd:cd08556  48 ----------IPTLEEVLELVKGgVGLNIELKEPTryPGLEAKVAELLREYGLEERVVVSSFDHEALRALKELDPEVPT- 116

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 200 fslqrvllilGLFFTGLLPFVPIREQFFEIPMPSIILKLKephtiskghkfliwlsdtlLMRKALFDHLTARGIQVYVWV 279
Cdd:cd08556 117 ----------GLLVDKPPLDPLLAELARALGADAVNPHYK-------------------LLTPELVRAAHAAGLKVYVWT 167

                       250       260
                ....*....|....*....|..
gi 23956140 280 LNEEYEYKRAFDLGATGVMTDY 301
Cdd:cd08556 168 VNDPEDARRLLALGVDGIITDD 189
GDPD pfam03009
Glycerophosphoryl diester phosphodiesterase family; E. coli has two sequence related isozymes ...
 45-302 5.47e-35

Glycerophosphoryl diester phosphodiesterase family; E. coli has two sequence related isozymes of glycerophosphoryl diester phosphodiesterase (GDPD) - periplasmic and cytosolic. This family also includes agrocinopine synthase, the similarity to GDPD has been noted. This family appears to have weak but not significant matches to mammalian phospholipase C pfam00388, which suggests that this family may adopt a TIM barrel fold.


Pssm-ID: 397241 [Multi-domain]  Cd Length: 244  Bit Score: 127.13  E-value: 5.47e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140    45 HRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCELPpylcKLDVPFQRAC 124
Cdd:pfam03009   1 HRGASGSYPENTLASFRKAAEAGADYIEFDVQLTKDGVPVVLHDFNLDRTTDGAGYVRDLTLEELK----RLDIGAGNSG 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140   125 KCEGKDTRIPLLKEVFEAFPETPINIDIKVnnnvlikkvsELVKQYKREHLTVWGNANSEIVDKCYKENSD-IPILFSLQ 203
Cdd:pfam03009  77 PLSGERVPFPTLEEVLEFDWDVGFNIEIKI----------KPYVEAIAPEEGLIVKDLLLSVDEILAKKADpRRVIFSSF 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140   204 RVLLILGLffTGLLPFVPIREQFFEIPMpsiilklKEPHTISKGHKFL--------IWLSDTLLMRkaLFDHLTARGIQV 275
Cdd:pfam03009 147 NPDELKRL--RELAPKLPLVFLSSGRAY-------AEADLLERAAAFAgapallgeVALVDEALPD--LVKRAHARGLVV 215

                         250       260
                  ....*....|....*....|....*..
gi 23956140   276 YVWVLNEEYEYKRAFDLGATGVMTDYP 302
Cdd:pfam03009 216 HVWTVNNEDEMKRLLELGVDGVITDRP 242
GDPD_memb_like cd08579
Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial ...
 43-302 1.44e-34

Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.


Pssm-ID: 176521 [Multi-domain]  Cd Length: 220  Bit Score: 125.35  E-value: 1.44e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCELPpylcKLDVpfqr 122
Cdd:cd08579   2 IAHRGVSSNGVENTLEALEAAIKAKPDYVEIDVQETKDGQFVVMHDANLKRLAGVNKKVWDLTLEELK----KLTI---- 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 123 acKCEGKDTRIPLLKEVFEAF--PETPINIDIKVNNNV---LIKKVSELVKQYKREHLTVWGNANSEIVDKCYKENSDIP 197
Cdd:cd08579  74 --GENGHGAKIPSLDEYLALAkgLKQKLLIELKPHGHDspdLVEKFVKLYKQNLIENQHQVHSLDYRVIEKVKKLDPKIK 151

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 198 ilfslqrVLLILGLFFTGlLPFVPIreQFFEIpmpsiilklkEPHTISKGhkfliwlsdtlLMRKAlfdhlTARGIQVYV 277
Cdd:cd08579 152 -------TGYILPFNIGN-LPKTNV--DFYSI----------EYSTLNKE-----------FIRQA-----HQNGKKVYV 195

                       250       260
                ....*....|....*....|....*
gi 23956140 278 WVLNEEYEYKRAFDLGATGVMTDYP 302
Cdd:cd08579 196 WTVNDPDDMQRYLAMGVDGIITDYP 220
GDPD_TtGDE_like cd08563
Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar ...
 43-302 1.77e-34

Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.


Pssm-ID: 176506 [Multi-domain]  Cd Length: 230  Bit Score: 125.36  E-value: 1.77e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCElppyLCKLD--VPF 120
Cdd:cd08563   4 FAHRGYSGTAPENTLLAFKKAIEAGADGIELDVHLTKDGQLVVIHDETVDRTTNGKGYVKDLTLEE----LKKLDagSWF 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 121 QRACKCEgkdtRIPLLKEVFEAFPETPINIDIKVNNNV-----LIKKVSELVKQYKREHLTVWGNANSEIVDKCYKENSD 195
Cdd:cd08563  80 DEKFTGE----KIPTLEEVLDLLKDKDLLLNIEIKTDVihypgIEKKVLELVKEYNLEDRVIFSSFNHESLKRLKKLDPK 155

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 196 IPIlfslqrvllilglfftGLLpfvpireqfFEIpmpsiilKLKEPHTISKGHKFLIWLSDTLLMRKALFDHLTARGIQV 275
Cdd:cd08563 156 IKL----------------ALL---------YET-------GLQDPKDYAKKIGADSLHPDFKLLTEEVVEELKKRGIPV 203

                       250       260
                ....*....|....*....|....*..
gi 23956140 276 YVWVLNEEYEYKRAFDLGATGVMTDYP 302
Cdd:cd08563 204 RLWTVNEEEDMKRLKDLGVDGIITNYP 230
GDPD_TmGDE_like cd08568
Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins; ...
 43-305 2.99e-32

Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.


Pssm-ID: 176511 [Multi-domain]  Cd Length: 226  Bit Score: 119.33  E-value: 2.99e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCELPpylcKLDVpfqr 122
Cdd:cd08568   3 LGHRGYRAKYPENTLEAFKKAIEYGADGVELDVWLTKDGKLVVLHDENLKRVGGVDLKVKELTYKELK----KLHP---- 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 123 ackcegKDTRIPLLKEVFEAFPETPI-NIDIKVNNNVliKKVSELVKQYKREHLTVWGNANSEIVDKCYKENSDipilfs 201
Cdd:cd08568  75 ------GGELIPTLEEVFRALPNDAIiNVEIKDIDAV--EPVLEIVEKFNALDRVIFSSFNHDALRELRKLDPD------ 140

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 202 lqrvlLILGLFFTGLLPFVPIREQFFEIPMPSIILKLKEPHTIS--KGHKFLIWLsdtllmRKalfdhltaRGIQVYVWV 279
Cdd:cd08568 141 -----AKVGLLIGEEEEGFSIPELHEKLKLYSLHVPIDAIGYIGfeKFVELLRLL------RK--------LGLKIVLWT 201

                       250       260
                ....*....|....*....|....*.
gi 23956140 280 LNEEYEYKRAFDLgATGVMTDYPTKL 305
Cdd:cd08568 202 VNDPELVPKLKGL-VDGVITDDVEKI 226
GDPD_YPL206cp_fungi cd08570
Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and ...
 43-302 2.92e-31

Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholipase C-type degradation mechanism. YPL206cp has been characterized as a PG-specific phospholipase C that selectively catalyzes the cleavage of PG, not glycerophosphoinositol (GPI) or glycerophosphocholine (GPC), to diacylglycerol (DAG) and glycerophosphate. Members in this family are distantly related to S. cerevisiae YPL110cp, which selectively hydrolyzes glycerophosphocholine (GPC), not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate, and has been characterized as a cytoplasmic GPC-specific phosphodiesterase.


Pssm-ID: 176512 [Multi-domain]  Cd Length: 234  Bit Score: 116.94  E-value: 2.92e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYcelPPYLCKLdvpfqr 122
Cdd:cd08570   2 IGHRGYKAKYPENTLLAFEKAVEAGADAIETDVHLTKDGVVVISHDPNLKRCFGKDGLIIDDST---WDELSHL------ 72

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 123 acKC-EGKDTRIPLLKEVFEAF-----PETPINIDIKVNNN--VLIKKVSELVKQYK-----REHLtVWGNANSEIVDKC 189
Cdd:cd08570  73 --RTiEEPHQPMPTLKDVLEWLvehelPDVKLMLDIKRDNDpeILFKLIAEMLAVKPdldfwRERI-ILGLWHLDFLKYG 149

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 190 YKENSDIP---ILFSLqrvllilglfftgllpfvPIREQFFEIPmpsiiLKLkepHTISKGHKfLIWLSDtllmRKALFD 266
Cdd:cd08570 150 KEVLPGFPvfhIGFSL------------------DYARHFLNYS-----EKL---VGISMHFV-SLWGPF----GQAFLP 198

                       250       260       270
                ....*....|....*....|....*....|....*.
gi 23956140 267 HLTARGIQVYVWVLNEEYEYKRAFDLGATGVMTDYP 302
Cdd:cd08570 199 ELKKNGKKVFVWTVNTEEDMRYAIRLGVDGVITDDP 234
GDPD_like_2 cd08582
Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial ...
 43-303 1.93e-26

Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176524 [Multi-domain]  Cd Length: 233  Bit Score: 104.32  E-value: 1.93e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCELPpylcKLDVPFQR 122
Cdd:cd08582   2 IAHRGASAEAPENTLAAFELAWEQGADGIETDVRLTKDGELVCVHDPTLKRTSGGDGAVSDLTLAELR----KLDIGSWK 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 123 ACKceGKDTRIPLLKEVFEAFPETP--INIDIKVNNNVliKKVSELVKQykrehltvwgnanseIVDKCYKENSDIPILf 200
Cdd:cd08582  78 GES--YKGEKVPTLEEYLAIVPKYGkkLFIEIKHPRRG--PEAEEELLK---------------LLKESGLLPEQIVII- 137

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 201 SLQRVLLILglfftgllpfvpIREQFFEIP---MPSIILKLKEPHTISKGHKFL-IWLSDTLLMRKALFDHLTARGIQVY 276
Cdd:cd08582 138 SFDAEALKR------------VRELAPTLEtlwLRNYKSPKEDPRPLAKSGGAAgLDLSYEKKLNPAFIKALRDAGLKLN 205

                       250       260
                ....*....|....*....|....*..
gi 23956140 277 VWVLNEEYEYKRAFDLGATGVMTDYPT 303
Cdd:cd08582 206 VWTVDDAEDAKRLIELGVDSITTNRPG 232
GDPD_SpGDE_like cd08567
Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi ...
 45-302 3.51e-25

Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176510 [Multi-domain]  Cd Length: 263  Bit Score: 101.62  E-value: 3.51e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  45 HRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHD----------ANLKRSTGVNVNVSDLKYCEL----- 109
Cdd:cd08567   6 HRGARGLLPENTLPAFAKALDLGVDTLELDLVLTKDGVIVVSHDpklnpditrdPDGAWLPYEGPALYELTLAEIkqldv 85

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 110 ----PPYLCKLDVPFQRACkcegKDTRIPLLKEVFEAFP-----ETPINIDIKVN--NNVLIKKVSELVKqykrehltvw 178
Cdd:cd08567  86 gekrPGSDYAKLFPEQIPV----PGTRIPTLEEVFALVEkygnqKVRFNIETKSDpdRDILHPPPEEFVD---------- 151

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 179 gNANSEIvdkcykENSDIPILFSLQ----RVLLIlglfftgllpfvpIREQFFEIPMPSIILK--LKEPHTISKGHKFLI 252
Cdd:cd08567 152 -AVLAVI------RKAGLEDRVVLQsfdwRTLQE-------------VRRLAPDIPTVALTEEttLGNLPRAAKKLGADI 211

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|
gi 23956140 253 WLSDTLLMRKALFDHLTARGIQVYVWVLNEEYEYKRAFDLGATGVMTDYP 302
Cdd:cd08567 212 WSPYFTLVTKELVDEAHALGLKVVPWTVNDPEDMARLIDLGVDGIITDYP 261
GDPD_AtGDE_like cd08566
Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar ...
 43-302 1.46e-23

Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.


Pssm-ID: 176509 [Multi-domain]  Cd Length: 240  Bit Score: 96.60  E-value: 1.46e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGAGENL-ENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCELppYLCKLDVPFQ 121
Cdd:cd08566   3 VAHRGGWGAGApENSLAAIEAAIDLGADIVEIDVRRTKDGVLVLMHDDTLDRTTNGKGKVSDLTLAEI--RKLRLKDGDG 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 122 RackceGKDTRIPLLKEVFEAFPE-TPINIDIKvnnNVLIKKVSELVKQYK-REHLTVWGNANSEivdkcYKENSDIpil 199
Cdd:cd08566  81 E-----VTDEKVPTLEEALAWAKGkILLNLDLK---DADLDEVIALVKKHGaLDQVIFKSYSEEQ-----AKELRAL--- 144

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 200 fsLQRVLLILGLFFTGLLPFVPIREQFFEIPMPSIILKLKEPH-----TISKGHKFLIWlsdtllmrkalFDHLTARGIQ 274
Cdd:cd08566 145 --APEVMLMPIVRDAEDLDEEEARAIDALNLLAFEITFDDLDLpplfdELLRALGIRVW-----------VNTLGDDDTA 211

                       250       260
                ....*....|....*....|....*....
gi 23956140 275 VYVWVLNEEYE-YKRAFDLGATGVMTDYP 302
Cdd:cd08566 212 GLDRALSDPREvWGELVDAGVDVIQTDRP 240
GDPD_like_3 cd08585
Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial ...
 41-171 6.63e-22

Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176527 [Multi-domain]  Cd Length: 237  Bit Score: 92.00  E-value: 6.63e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  41 RHISHRGGAGENL---ENTMAAFQHAVTIGTDmLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCELppylckld 117
Cdd:cd08585   5 RPIAHRGLHDRDAgipENSLSAFRAAAEAGYG-IELDVQLTADGEVVVFHDDNLKRLTGVEGRVEELTAAEL-------- 75

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 23956140 118 vpfqRACKCEGKDTRIPLLKEVFEAFP-ETPINIDIKV---NNNVLIKKVSELVKQYK 171
Cdd:cd08585  76 ----RALRLLGTDEHIPTLDEVLELVAgRVPLLIELKScggGDGGLERRVLAALKDYK 129
GDPD_EcUgpQ_like cd08562
Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic ...
 43-302 4.30e-20

Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), can only be hydrolyzed by UgpQ during transport at the inner side of the cytoplasmic membrane to alcohols and G3P, which is a source of phosphate. In contrast to Ca2+-dependent periplasmic phosphodiesterase GlpQ, cytosolic phosphodiesterase UgpQ requires divalent cations, such as Mg2+, Co2+, or Mn2+, for its enzyme activity.


Pssm-ID: 176505 [Multi-domain]  Cd Length: 229  Bit Score: 86.89  E-value: 4.30e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCELPpylcKLDV--PF 120
Cdd:cd08562   2 IAHRGASSLAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLIHDDTLDRTTNGSGAVTELTWAELA----QLDAgsWF 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 121 QRackcEGKDTRIPLLKEVFEAFPETPI--NIDIKVNNNVLiKKVSELVKQYKREHltvWgNANSEIVDKCYkensDIPI 198
Cdd:cd08562  78 SP----EFAGEPIPTLADVLELARELGLglNLEIKPDPGDE-ALTARVVAAALREL---W-PHASKLLLSSF----SLEA 144

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 199 LFSLQRVL--LILGLFFTGLLPfvPIREQFFEIPMPSIILKlkephtiskgHKFLiwlsdtllmRKALFDHLTARGIQVY 276
Cdd:cd08562 145 LRAARRAApeLPLGLLFDTLPA--DWLELLAALGAVSIHLN----------YRGL---------TEEQVKALKDAGYKLL 203

                       250       260
                ....*....|....*....|....*.
gi 23956140 277 VWVLNEEYEYKRAFDLGATGVMTDYP 302
Cdd:cd08562 204 VYTVNDPARAAELLEWGVDAIFTDRP 229
GDPD_GDE1 cd08573
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 43-302 5.98e-19

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G protein-coupled receptor (GPCR) signaling. In addition, GDE1 may interact with PRA1 domain family, member 2 (PRAF2, also known as JM4), which is an interacting protein of the G protein-coupled chemokine receptor CCR5. The catalytic activity, which is dependent on the integrity of the GDPD domain, is required for GDE1 cellular function.


Pssm-ID: 176515 [Multi-domain]  Cd Length: 258  Bit Score: 84.23  E-value: 5.98e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCElppyLCKLDVPFQR 122
Cdd:cd08573   2 IGHRGAGHDAPENTLAAFRQAKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTTDGTGLVAELTWEE----LRKLNAAAKH 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 123 ACKCEGKDTRIPLLKEVFEAFPE--TPINIDIKVNNNVLIKKVSELVKQYKRehltVWGNA-----NSEIVDKCYKENSD 195
Cdd:cd08573  78 RLSSRFPGEKIPTLEEAVKECLEnnLRMIFDVKSNSSKLVDALKNLFKKYPG----LYDKAivcsfNPIVIYKVRKADPK 153

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 196 IpilfslqrvllILGL-----FFTGLLPFVPIR-EQFFEIPMPSIILKLKEPHTiskgHKFLIWL--SDTLLMRK----- 262
Cdd:cd08573 154 I-----------LTGLtwrpwFLSYTDDEGGPRrKSGWKHFLYSMLDVILEWSL----HSWLPYFlgVSALLIHKddiss 218

                       250       260       270       280
                ....*....|....*....|....*....|....*....|..
gi 23956140 263 ALFDHLTARGIQVYVWVLNEEYEyKRAF--DLGATgVMTDYP 302
Cdd:cd08573 219 AYVRYWRARGIRVIAWTVNTPTE-KQYFakTLNVP-YITDSL 258
GDPD_pAtGDE_like cd08565
Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens ...
 43-303 6.70e-19

Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176508 [Multi-domain]  Cd Length: 235  Bit Score: 83.99  E-value: 6.70e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCELPpylcKLDVPfqr 122
Cdd:cd08565   2 AGHRGGRNLWPENTLEGFRKALELGVDAVEFDVHLTADGEVVVIHDPTLDRTTHGTGAVRDLTLAERK----ALRLR--- 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 123 ackcEGKDTRIPLLKEVFEAFPETPI--NIDIKVNNNV-----LIKKVSELVKQYKREHLTVWGNANSEIVDKCYKENSd 195
Cdd:cd08565  75 ----DSFGEKIPTLEEVLALFAPSGLelHVEIKTDADGtpypgAAALAAATLRRHGLLERSVLTSFDPAVLTEVRKHPG- 149

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 196 IPILFSL-QRVLLILGlfftGLLPFVPIReqffeipmpsiilklKEP-HTISKGHKFLIwlsDTLLMRKAlfdhlTARGI 273
Cdd:cd08565 150 VRTLGSVdEDMLERLG----GELPFLTAT---------------ALKaHIVAVEQSLLA---ATWELVRA-----AVPGL 202

                       250       260       270
                ....*....|....*....|....*....|
gi 23956140 274 QVYVWVLNEEYEYKRAFDLGATGVMTDYPT 303
Cdd:cd08565 203 RLGVWTVNDDSLIRYWLACGVRQLTTDRPD 232
GDPD_SaGlpQ_like cd08601
Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins; ...
 43-309 2.92e-18

Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176543 [Multi-domain]  Cd Length: 256  Bit Score: 82.36  E-value: 2.92e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVN--VSDLKYCELPpylcKLDV-- 118
Cdd:cd08601   4 IAHRGASGYAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTNIERPgpVKDYTLAEIK----QLDAgs 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 119 ------PfQRAcKCEGKDTRIPLLKEVFEAF-PETPINIDIKVNNNV--LIKKVSELVKQYkreHLTVWGNANSEIV--- 186
Cdd:cd08601  80 wfnkayP-EYA-RESYSGLKVPTLEEVIERYgGRANYYIETKSPDLYpgMEEKLLATLDKY---GLLTDNLKNGQVIiqs 154

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 187 ------DKCYKENSDIPILfslqrvllilglfftgllpfvpireQFFEIPMPSIILKLKephtISKGHKFLIWLSDTL-L 259
Cdd:cd08601 155 fskeslKKLHQLNPNIPLV-------------------------QLLWYGEGAETYDKW----LDEIKEYAIGIGPSIaD 205

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|
gi 23956140 260 MRKALFDHLTARGIQVYVWVLNEEYEYKRAFDLGATGVMTDYPTKLKDFL 309
Cdd:cd08601 206 ADPWMVHLIHKKGLLVHPYTVNEKADMIRLINWGVDGMFTNYPDRLKEVL 255
GDPD_Rv2277c_like cd08580
Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c ...
 43-304 3.72e-17

Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.


Pssm-ID: 176522 [Multi-domain]  Cd Length: 263  Bit Score: 79.68  E-value: 3.72e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCELPpylcKLDVPFQR 122
Cdd:cd08580   4 VAHRGGTADAPENTLLAISKALANGADAIWLTVQLSKDGVPVLYRPSDLKSLTNGSGAVSAYTAAQLA----TLNAGYNF 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 123 ACKCE----GKDTRIPLLKEVFEAFPETPINIDIK-VNNNVLIKKVSELVKQYKREHLTVWGNANSEIVDKCYKENSDip 197
Cdd:cd08580  80 KPEGGypyrGKPVGIPTLEQVLRAFPDTPFILDMKsLPADPQAKAVARVLERENAWSRVRIYSTNADYQDALAPYPQA-- 157

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 198 ILF----SLQRVLLILGLFFTGLLPFVPIREQFFEIPMPsiiLKLKEPHTISKGH---KFLIWLSDTL-LMRKALFDHLT 269
Cdd:cd08580 158 RLFesrdVTRTRLANVAMAHQCDLPPDSGAWAGFELRRK---VTVVETFTLGEGRspvQATLWTPAAVdCFRRNSKVKIV 234

                       250       260       270
                ....*....|....*....|....*....|....*
gi 23956140 270 ARGIqvyvwvlNEEYEYKRAFDLGATGVMTDYPTK 304
Cdd:cd08580 235 LFGI-------NTADDYRLAKCLGADAVMVDSPAA 262
GDPD_like_1 cd08581
Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial ...
 43-156 1.48e-13

Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176523 [Multi-domain]  Cd Length: 229  Bit Score: 68.90  E-value: 1.48e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKycelppylcklDVPFQR 122
Cdd:cd08581   2 VAHRGYPARYPENTLVGFRAAVDAGARFVEFDVQLSADGVPVVFHDDTLLRLTGVEGLLHELE-----------DAELDS 70

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....
gi 23956140 123 ACKCEGK-------DTRIPLLKEVFEA---FPETPINIDIKVNN 156
Cdd:cd08581  71 LRVAEPArfgsrfaGEPLPSLAAVVQWlaqHPQVTLFVEIKTES 114
GDPD_GsGDE_like cd08564
Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria ...
 45-310 2.27e-13

Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176507 [Multi-domain]  Cd Length: 265  Bit Score: 68.65  E-value: 2.27e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  45 HRGGAGENL--ENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSH--------DANLKRSTGVNVNVSDLKYCELPPYLC 114
Cdd:cd08564   9 HRGAGCSTLypENTLPSFRRALEIGVDGVELDVFLTKDNEIVVFHgteddtnpDTSIQLDDSGFKNINDLSLDEITRLHF 88

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 115 KLDVPFQRACKCEGKDTRIPLLKEVFEAF-PETPINIDIKVNNNVLIKKVSELVKQYKrehltvwgnanseivdkcYKEN 193
Cdd:cd08564  89 KQLFDEKPCGADEIKGEKIPTLEDVLVTFkDKLKYNIELKGREVGLGERVLNLVEKYG------------------MILQ 150

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 194 SDIPILFSLQRVLLILGLFFTGLLpfVPIREQFFEIPMPSIILKLKephTISKGHKFLIWLSDTLLMRKALFdHLTARGI 273
Cdd:cd08564 151 VHFSSFLHYDRLDLLKALRPNKLN--VPIALLFNEVKSPSPLDFLE---QAKYYNATWVNFSYDFWTEEFVK-KAHENGL 224

                       250       260       270       280
                ....*....|....*....|....*....|....*....|.
gi 23956140 274 QVYVW----VLNEEYEYKRAFDLGATGVMTDYPTKLKDFLN 310
Cdd:cd08564 225 KVMTYfdepVNDNEEDYKVYLELGVDCICPNDPVLLVNFLK 265
GDPD_GDE5_like cd08572
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 42-153 5.50e-13

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176514 [Multi-domain]  Cd Length: 293  Bit Score: 68.08  E-value: 5.50e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  42 HISHRGgAGEN---------LENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHD----------ANLKRSTGVNVNVS 102
Cdd:cd08572   2 VIGHRG-LGKNyasgslagiRENTIASFLAAAKHGADMVEFDVQLTKDGVPVIYHDftisvsekskTGSDEGELIEVPIH 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23956140 103 DLKYCEL-------------PPYLCKLDVPFQRACKCEgKDTRIPLLKEVFEAFPE-TPINIDIK 153
Cdd:cd08572  81 DLTLEQLkelglqhisalkrKALTRKAKGPKPNPWGMD-EHDPFPTLQEVLEQVPKdLGFNIEIK 144
GDPD_GDE4_like_1 cd08613
Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of ...
 53-179 1.35e-12

Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.


Pssm-ID: 176554 [Multi-domain]  Cd Length: 309  Bit Score: 67.00  E-value: 1.35e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  53 LENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCELPpylcKLDV------------PF 120
Cdd:cd08613  59 LENTIASMQAAFDAGADVVELDVHPTKDGEFAVFHDWTLDCRTDGSGVTRDHTMAELK----TLDIgygytadggktfPF 134

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 23956140 121 QrackceGKDT-RIPLLKEVFEAFPETPINIDIKVNNNVLIKKVSELVK---QYKREHLTVWG 179
Cdd:cd08613 135 R------GKGVgMMPTLDEVFAAFPDRRFLINFKSDDAAEGELLAEKLAtlpRKRLQVLTVYG 191
GDPD_GDE5 cd08607
Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester ...
 42-153 8.11e-12

Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.


Pssm-ID: 176549 [Multi-domain]  Cd Length: 290  Bit Score: 64.62  E-value: 8.11e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  42 HISHRGgAGENL--------ENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHD----ANLKRSTGVN------VNVSD 103
Cdd:cd08607   2 DVGHRG-AGNSYtaasavvrENTIASFLQAAEHGADMVEFDVQLTKDLVPVVYHDftlrVSLKSKGDSDrddlleVPVKD 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 23956140 104 LKYCELppylcKLDVPFQRA-----------CKCEGKDTRI-PLLKEVFEAFPE-TPINIDIK 153
Cdd:cd08607  81 LTYEQL-----KLLKLFHISalkvkeyksveEDEDPPEHQPfPTLSDVLESVPEdVGFNIEIK 138
PI-PLCc_GDPD_SF cd08555
Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases ...
 43-172 7.03e-11

Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily; The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols that are major sources of carbon and phosphate. Both, PI-PLCs and GP-GDEs, can hydrolyze the 3'-5' phosphodiester bonds in different substrates, and utilize a similar mechanism of general base and acid catalysis with conserved histidine residues, which consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This superfamily also includes Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81, glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs). The residues essential for enzyme activities and metal binding are not conserved in these sequence homologs, which might suggest that the function of catalytic domains in these proteins might be distinct from those in typical PLC-like phosphodiesterases.


Pssm-ID: 176498 [Multi-domain]  Cd Length: 179  Bit Score: 60.14  E-value: 7.03e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGvnvnvsdlkyCELPPYLCKLdvpfqr 122
Cdd:cd08555   2 LSHRGYSQNGQENTLEAFYRALDAGARGLELDVRLTKDGELVVYHGPTLDRTTA----------GILPPTLEEV------ 65

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 23956140 123 ackcegkdtrIPLLKEVFEAFPETPI-NIDIKVNNNVLIKKVSELVKQYKR 172
Cdd:cd08555  66 ----------LELIADYLKNPDYTIIlSLEIKQDSPEYDEFLAKVLKELRV 106
GDPD_periplasmic_GlpQ_like cd08559
Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins; This ...
 43-97 1.01e-10

Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for GlpQ enzymatic activity. This subfamily also includes some GP-GDEs in higher plants and their eukaryotic homologs, which show very high sequence similarities with bacterial periplasmic GP-GDEs.


Pssm-ID: 176502 [Multi-domain]  Cd Length: 296  Bit Score: 61.52  E-value: 1.01e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGV 97
Cdd:cd08559   4 IAHRGASGYAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNV 58
ugpQ PRK09454
cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
 39-139 1.65e-08

cytoplasmic glycerophosphodiester phosphodiesterase; Provisional


Pssm-ID: 236524 [Multi-domain]  Cd Length: 249  Bit Score: 54.56  E-value: 1.65e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140   39 LSRHISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRST-GVNVnVSDLKYCElppyLCKLD 117
Cdd:PRK09454   7 YPRIVAHRGGGKLAPENTLAAIDVGARYGHRMIEFDAKLSADGEIFLLHDDTLERTSnGWGV-AGELTWQD----LAQLD 81

                         90       100
                 ....*....|....*....|....
gi 23956140  118 VP--FQRACKCEgkdtRIPLLKEV 139
Cdd:PRK09454  82 AGswFSAAFAGE----PLPTLSQV 101
GDPD_ScGlpQ1_like cd08602
Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar ...
 43-105 1.72e-08

Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.


Pssm-ID: 176544 [Multi-domain]  Cd Length: 309  Bit Score: 55.00  E-value: 1.72e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTgvnvNVSDLK 105
Cdd:cd08602   4 IAHRGASGYRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTT----DVADHP 62
GDPD_EcGlpQ_like cd08600
Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins; ...
 43-97 5.75e-08

Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for the enzymatic activity of GlpQ. This family also includes a surface-exposed lipoprotein, protein D (HPD), from Haemophilus influenza Type b and nontypeable strains, which shows very high sequence similarity with E. coli GlpQ. HPD has been characterized as a human immunoglobulin D-binding protein with glycerophosphodiester phosphodiesterase activity. It can hydrolyze phosphatidylcholine from host membranes to produce free choline on the lipopolysaccharides on the surface of pathogenic bacteria.


Pssm-ID: 176542 [Multi-domain]  Cd Length: 318  Bit Score: 53.16  E-value: 5.75e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGV 97
Cdd:cd08600   4 IAHRGASGYLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNV 58
glpQ PRK11143
glycerophosphodiester phosphodiesterase; Provisional
 43-97 9.01e-07

glycerophosphodiester phosphodiesterase; Provisional


Pssm-ID: 236859 [Multi-domain]  Cd Length: 355  Bit Score: 49.67  E-value: 9.01e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 23956140   43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGV 97
Cdd:PRK11143  30 IAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQLVVLHDHYLDRVTDV 84
PI-PLCc_GDPD_SF_unchar1 cd08583
Uncharacterized hypothetical proteins similar to the catalytic domains of ...
 43-304 7.38e-06

Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases; This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.


Pssm-ID: 176525 [Multi-domain]  Cd Length: 237  Bit Score: 46.52  E-value: 7.38e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGA--GENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSH--DANLKRSTGvnvnvsdlkyceLPPYLCKLDV 118
Cdd:cd08583   2 IAHAMGGidGKTYTNSLDAFEHNYKKGYRVFEVDLSLTSDGVLVARHswDESLLKQLG------------LPTSKNTKPL 69

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 119 PFQrackcEGKDTRI-----PL-LKEVFE---AFPETPINIDIKVNNNVLIKKVSE-LVKQYKRehltvwgnANSEIVDK 188
Cdd:cd08583  70 SYE-----EFKSKKIygkytPMdFKDVIDllkKYPDVYIVTDTKQDDDNDIKKLYEyIVKEAKE--------VDPDLLDR 136

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 189 CYKENSDIPILFSLQRVLLILGLFFTgllpfvPIREQffEIPMPSIILKLKEphtisKGHKfLIWLSDTLLMRKALfDHL 268
Cdd:cd08583 137 VIPQIYNEEMYEAIMSIYPFKSVIYT------LYRQD--SIRLDEIIAFCYE-----NGIK-AVTISKNYVNDKLI-EKL 201

                       250       260       270
                ....*....|....*....|....*....|....*.
gi 23956140 269 TARGIQVYVWVLNEEYEYKRAFDLGATGVMTDYPTK 304
Cdd:cd08583 202 NKAGIYVYVYTINDLKDAQEYKKLGVYGIYTDFLTE 237
GDPD_GDE6 cd08610
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 43-97 1.60e-05

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.


Pssm-ID: 176552 [Multi-domain]  Cd Length: 316  Bit Score: 45.64  E-value: 1.60e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGV 97
Cdd:cd08610  26 IGHRGAPMLAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTLKRTTNI 80
GDPD_YPL110cp_fungi cd08606
Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and ...
 43-223 4.56e-05

Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which implies that YPL110cp may mediate protein-protein interactions in a variety of proteins and play a role in maintaining cellular phosphate levels. Members in this family are distantly related to S. cerevisiae YPL206cp, which selectively catalyzes the cleavage of phosphatidylglycerol (PG), not glycerophosphoinositol (GPI) or glycerophosphocholine (GPC), to diacylglycerol (DAG) and glycerophosphate, and has been characterized as a PG-specific phospholipase C.


Pssm-ID: 176548 [Multi-domain]  Cd Length: 286  Bit Score: 44.36  E-value: 4.56e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGgAGENL---------ENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRsTGVNVNVSDLKyceLPPYL 113
Cdd:cd08606   5 IGHRG-LGKNTaerkslqlgENTVESFILAASLGASYVEVDVQLTKDLVPVIYHDFLVSE-TGTDVPIHDLT---LEQFL 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140 114 ----CKLDVPFQ-RACKCEGKDTRI----PLLKEVFEAFPET-PINIDIK----------------VNNNVLIKKVSELV 167
Cdd:cd08606  80 hlsrMKYTVDFKkKGFKGNSRGHSIqapfTTLEELLKKLPKSvGFNIELKypmlheaeeeevapvaIELNAFVDTVLEKV 159

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 23956140 168 KQYkrehltvwgNANSEIVDKCYkeNSDIPILFSL-QRVLLILGLFFTGLLPFVPIR 223
Cdd:cd08606 160 FDY---------GAGRNIIFSSF--TPDICILLSLkQPGYPVLFLTEAGKAPDMDVR 205
GDPD_GDE3 cd08609
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 43-157 1.39e-04

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalian GDE3 functions as an inducer of osteoblast differentiation. It also plays a critical role for actin cytoskeletal modulation. The catalytic activity of GDPD domain is essential for mammalian GDE3 cellular function.


Pssm-ID: 176551 [Multi-domain]  Cd Length: 315  Bit Score: 42.99  E-value: 1.39e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGV-------------NVNVSDLKYCEL 109
Cdd:cd08609  30 VGHRGAPMLAPENTLMSLRKSLECGVVVFETDVMVSKDGVPFLMHDEGLLRTTNVkdvfpgrdaagsnNFTWTELKTLNA 109

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 23956140 110 PPYLCKLDvPFQRACKCEGKDTR------IPLLKEVFEAFPETPINI--DIKVNNN 157
Cdd:cd08609 110 GSWFLERR-PFWTLSSLSEEDRReadnqtVPSLSELLDLAKKHNVSImfDLRNENN 164
GDPD_2 pfam13653
Glycerophosphoryl diester phosphodiesterase family; This family also includes ...
 274-303 5.57e-04

Glycerophosphoryl diester phosphodiesterase family; This family also includes glycerophosphoryl diester phosphodiesterases as well as agrocinopine synthase, the similarity to GDPD has been noted. This family appears to have weak but not significant matches to mammalian phospholipase C pfam00388, which suggests that this family may adopt a TIM barrel fold.


Pssm-ID: 433380 [Multi-domain]  Cd Length: 30  Bit Score: 36.71  E-value: 5.57e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 23956140   274 QVYVWVLNEEYEYKRAFDLGATGVMTDYPT 303
Cdd:pfam13653   1 KVRFWTIDNKAAWKELMRLGVDGLNTDDPE 30
GDPD_GDE5_like_1_plant cd08605
Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester ...
 43-155 1.78e-03

Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.


Pssm-ID: 176547 [Multi-domain]  Cd Length: 282  Bit Score: 39.32  E-value: 1.78e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23956140  43 ISHRGgAGENL------------ENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVN---VSDLKYC 107
Cdd:cd08605   3 IGHRG-LGMNRashqpsvgpgirENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERGGEVEssrIRDLTLA 81

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 23956140 108 ELppylcKLDVPFQRACKC-------EGKDTR-----------IPLLKEVFEAFP-ETPINIDIKVN 155
Cdd:cd08605  82 EL-----KALGPQAESTKTstvalyrKAKDPEpepwimdvedsIPTLEEVFSEVPpSLGFNIELKFG 143
GDPD_EcGlpQ_like_1 cd08560
Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic ...
 34-90 2.29e-03

Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176503  Cd Length: 356  Bit Score: 39.33  E-value: 2.29e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 23956140  34 KKQRFlsrHISHRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDAN 90
Cdd:cd08560  14 RKTDF---SIGHRGAPLQFPEHTRESYEAAARMGAGILECDVTFTKDRELVCRHSQC 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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