NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|13384796|ref|NP_079685|]
View 

immediate early response 3-interacting protein 1 [Mus musculus]

Protein Classification

YOS1 family protein( domain architecture ID 10554140)

YOS1 family protein similar to Saccharomyces cerevisiae transport protein YOS1, a component of the YIP1-YIF1 complex, that is required for protein transport between endoplasmic reticulum and Golgi apparatus

Gene Ontology:  GO:0000139|GO:0015031
PubMed:  15659647

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Yos1 pfam08571
Yos1-like; In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for ...
 5-82 1.65e-33

Yos1-like; In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for transport between the endoplasmic reticulum and the Golgi complex. Yos1 appears to be conserved in eukaryotes.


:

Pssm-ID: 462523  Cd Length: 81  Bit Score: 109.93  E-value: 1.65e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13384796    5 LYSLMQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFG---EEPGIKSQLMNLIRSVRTVMRVPLIIVNSITIVLLLLF 81
Cdd:pfam08571  1 LGSLLYAILLLLNAIAILSEDRFLARIGWSSSQQDPGFGaggDDPSVKAQIINLIRAVRTLMRIPLIVINILVIVYELVL 80


                 .
gi 13384796   82 G 82
Cdd:pfam08571 81 G 81
 
Name Accession Description Interval E-value
Yos1 pfam08571
Yos1-like; In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for ...
 5-82 1.65e-33

Yos1-like; In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for transport between the endoplasmic reticulum and the Golgi complex. Yos1 appears to be conserved in eukaryotes.


Pssm-ID: 462523  Cd Length: 81  Bit Score: 109.93  E-value: 1.65e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13384796    5 LYSLMQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFG---EEPGIKSQLMNLIRSVRTVMRVPLIIVNSITIVLLLLF 81
Cdd:pfam08571  1 LGSLLYAILLLLNAIAILSEDRFLARIGWSSSQQDPGFGaggDDPSVKAQIINLIRAVRTLMRIPLIVINILVIVYELVL 80


                 .
gi 13384796   82 G 82
Cdd:pfam08571 81 G 81
 
Name Accession Description Interval E-value
Yos1 pfam08571
Yos1-like; In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for ...
 5-82 1.65e-33

Yos1-like; In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for transport between the endoplasmic reticulum and the Golgi complex. Yos1 appears to be conserved in eukaryotes.


Pssm-ID: 462523  Cd Length: 81  Bit Score: 109.93  E-value: 1.65e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13384796    5 LYSLMQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFG---EEPGIKSQLMNLIRSVRTVMRVPLIIVNSITIVLLLLF 81
Cdd:pfam08571  1 LGSLLYAILLLLNAIAILSEDRFLARIGWSSSQQDPGFGaggDDPSVKAQIINLIRAVRTLMRIPLIVINILVIVYELVL 80


                 .
gi 13384796   82 G 82
Cdd:pfam08571 81 G 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH