|
Name |
Accession |
Description |
Interval |
E-value |
| SpoU-like_MRM1 |
cd18105 |
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose ... |
146-303 |
1.42e-81 |
|
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose residues G1145 to GmG residue of the mitochondrial 16S rRNA. MRM1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349978 Cd Length: 158 Bit Score: 245.12 E-value: 1.42e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 146 LWLVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225
Cdd:cd18105 1 LWLLLDEITDPQNLGAILRSAYFLGVDGVVVSSKNSAPLSPVVSKASAGALELMPIYSVDNLASFLKSSKENGWKVVGTS 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 40068479 226 GCPSTEDPQSSeIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLP-PGLESLNVSVAAGILLHSI 303
Cdd:cd18105 81 APPSASSDKKT-IPANELSELLLEKPTILVLGNEGRGLRTNIKNLCDYLVSIPGGRSAEnPGVDSLNVSVAAGILLHSL 158
|
|
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
51-309 |
1.58e-63 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 203.12 E-value: 1.58e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 51 LLFGMTPCLLALqAARRSVARLLLQAGkagLQGKRAELLRMAEARDIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLRPRP 130
Cdd:COG0566 28 LAEGRHAVEEAL-KAGREIEELLVTEG---ALDRLAELLALAKAAGIPVYEVSREVLDKLSGTETHQGVLAVVRPPEYAD 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 131 WREAGEASPGDDpqqLWLVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGF 210
Cdd:COG0566 104 LEDLLAEAGEPP---LLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKVVRASAGALFHVPVARVTNLADA 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 211 LQTKAQQGWLVAGTvgcpsteDPQSSEipimSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTIlPrrqLPPGLESL 290
Cdd:COG0566 181 LEELKEAGFWVVGT-------DLDGEA----SLYEVDLPGPVALVLGNEGKGLSRLVLEACDELVRI-P---MAGGVESL 245
|
250
....*....|....*....
gi 40068479 291 NVSVAAGILLHSICSQRKG 309
Cdd:COG0566 246 NVAVAAAILLYEAARQRRA 264
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
78-307 |
1.94e-45 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 155.19 E-value: 1.94e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 78 KAGLQGKRAELLRMAEARDIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLRPRPWREAGEASPgDDPQQLWLVLDGIQDPR 157
Cdd:TIGR00186 24 KGLESKRLKKLIQLAKKQGINIQLVDRQKLDQLTKGGNHQGIAAKVKPILYKDLNDLYKTAK-SKKQPFLLILDEITDPH 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 158 NFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCPSTEDPQSSE 237
Cdd:TIGR00186 103 NLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVEYVPLARVTNLSRTITKLKESGFWTVGTDLDAQDTLYQVKL 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 238 IpimscleflweRPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPpgleSLNVSVAAGILLHSICSQR 307
Cdd:TIGR00186 183 T-----------KPLALVVGNEGEGVSRLIKENCDFLIKIPMAGKVD----SLNVSVAAGILLFEIKRQR 237
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
148-301 |
5.95e-36 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 127.26 E-value: 5.95e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 148 LVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSC-PLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTvg 226
Cdd:pfam00588 4 VVLDNIQDPGNLGAIIRTAAAFGADGLILVEPRSAdPYNPKAIRASAGALFHLPLVVVDNLEEALKDLKEAGYAVVAT-- 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 40068479 227 cpsteDPQSSEIPimsclEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTIlPrrqLPPGLESLNVSVAAGILLH 301
Cdd:pfam00588 82 -----SLGGKSLY-----EIDFPKKVALVFGNEGTGLSNEVLELCDRLVRI-P---MSGDVESLNVAVAAAIALY 142
|
|
| PRK11181 |
PRK11181 |
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; |
88-307 |
1.38e-26 |
|
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;
Pssm-ID: 183021 [Multi-domain] Cd Length: 244 Bit Score: 105.82 E-value: 1.38e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 88 LLRMAEARDIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLRPRPWRE-----AGEASPgddpqqLWLVLDGIQDPRNFGAV 162
Cdd:PRK11181 39 LINELEAQGIVIQLANRQTLDEKAEGAVHQGIIARVKPGRQLQENDlpdllASLEQP------FLLILDGVTDPHNLGAC 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 163 LRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGcPSTEDPQSSEIpims 242
Cdd:PRK11181 113 LRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAETVPLIRVTNLARTMRMLQEKNIWIVGTAG-EADHTLYQSKL---- 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 40068479 243 cleflwERPTLLVLGNEGSGLSQEVQASCQLLLTIlPrrqLPPGLESLNVSVAAGILLHSICSQR 307
Cdd:PRK11181 188 ------TGPLALVMGAEGEGMRRLTREHCDELISI-P---MAGSVSSLNVSVATGICLFEAVRQR 242
|
|
| SpoU_sub_bind |
pfam08032 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
51-127 |
1.77e-14 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 429793 [Multi-domain] Cd Length: 74 Bit Score: 67.65 E-value: 1.77e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 40068479 51 LLFGMTPCLLALQAaRRSVARLLLQAGKAGLQGKraELLRMAEARDIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLR 127
Cdd:pfam08032 1 LIYGRHAVLEALKS-GPEIKKLYLTEGRRDPRLK--ELLKLAKERGIKVEEVDRKKLDKLSGTANHQGVVAEVKPYE 74
|
|
| SpoU_sub_bind |
smart00967 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
57-125 |
4.62e-09 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 214943 [Multi-domain] Cd Length: 70 Bit Score: 52.15 E-value: 4.62e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 40068479 57 PCLLALQAARRsVARLLLQAGkagLQGKRAELLRMAEARDIPVLRPRRQKLDTMCRYQVHQGVCMEVSP 125
Cdd:smart00967 6 AVEEALKSGRR-IKELYLTEG---RAERLKELLKLAKERGIKVIEVSKKELDKLSGTANHQGVVAVVKP 70
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SpoU-like_MRM1 |
cd18105 |
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose ... |
146-303 |
1.42e-81 |
|
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose residues G1145 to GmG residue of the mitochondrial 16S rRNA. MRM1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349978 Cd Length: 158 Bit Score: 245.12 E-value: 1.42e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 146 LWLVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225
Cdd:cd18105 1 LWLLLDEITDPQNLGAILRSAYFLGVDGVVVSSKNSAPLSPVVSKASAGALELMPIYSVDNLASFLKSSKENGWKVVGTS 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 40068479 226 GCPSTEDPQSSeIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLP-PGLESLNVSVAAGILLHSI 303
Cdd:cd18105 81 APPSASSDKKT-IPANELSELLLEKPTILVLGNEGRGLRTNIKNLCDYLVSIPGGRSAEnPGVDSLNVSVAAGILLHSL 158
|
|
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
51-309 |
1.58e-63 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 203.12 E-value: 1.58e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 51 LLFGMTPCLLALqAARRSVARLLLQAGkagLQGKRAELLRMAEARDIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLRPRP 130
Cdd:COG0566 28 LAEGRHAVEEAL-KAGREIEELLVTEG---ALDRLAELLALAKAAGIPVYEVSREVLDKLSGTETHQGVLAVVRPPEYAD 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 131 WREAGEASPGDDpqqLWLVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGF 210
Cdd:COG0566 104 LEDLLAEAGEPP---LLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKVVRASAGALFHVPVARVTNLADA 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 211 LQTKAQQGWLVAGTvgcpsteDPQSSEipimSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTIlPrrqLPPGLESL 290
Cdd:COG0566 181 LEELKEAGFWVVGT-------DLDGEA----SLYEVDLPGPVALVLGNEGKGLSRLVLEACDELVRI-P---MAGGVESL 245
|
250
....*....|....*....
gi 40068479 291 NVSVAAGILLHSICSQRKG 309
Cdd:COG0566 246 NVAVAAAILLYEAARQRRA 264
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
78-307 |
1.94e-45 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 155.19 E-value: 1.94e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 78 KAGLQGKRAELLRMAEARDIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLRPRPWREAGEASPgDDPQQLWLVLDGIQDPR 157
Cdd:TIGR00186 24 KGLESKRLKKLIQLAKKQGINIQLVDRQKLDQLTKGGNHQGIAAKVKPILYKDLNDLYKTAK-SKKQPFLLILDEITDPH 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 158 NFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCPSTEDPQSSE 237
Cdd:TIGR00186 103 NLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVEYVPLARVTNLSRTITKLKESGFWTVGTDLDAQDTLYQVKL 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 238 IpimscleflweRPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPpgleSLNVSVAAGILLHSICSQR 307
Cdd:TIGR00186 183 T-----------KPLALVVGNEGEGVSRLIKENCDFLIKIPMAGKVD----SLNVSVAAGILLFEIKRQR 237
|
|
| SpoU-like_RlmB |
cd18103 |
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the ... |
146-303 |
9.75e-45 |
|
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349976 Cd Length: 143 Bit Score: 150.23 E-value: 9.75e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 146 LWLVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225
Cdd:cd18103 1 LLLILDGITDPHNLGAIIRSAEAFGVDGVIIPKRRSAPLTPTVAKASAGALEHLPIARVTNLARALEELKEAGFWIYGAD 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 40068479 226 GcpstedpqSSEIPImscLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTIlPrrqLPPGLESLNVSVAAGILLHSI 303
Cdd:cd18103 81 G--------EAEKSL---YDVDLTGPLALVLGSEGKGLRRLVLKNCDFLVKI-P---MAGKVDSLNVSVAAGIILYEI 143
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
146-303 |
1.01e-44 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 150.27 E-value: 1.01e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 146 LWLVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225
Cdd:cd18095 1 LVLVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNPKVVRASMGALFRLPIIRVDDLEELLEELKEAGYKVVAAD 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 40068479 226 GCPSTedpqsseipimSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTIlPrrqLPPGLESLNVSVAAGILLHSI 303
Cdd:cd18095 81 LDGGS-----------SLYDLDLPKPVALVLGNEGNGLSDELLELCDKRVTI-P---MSGGVESLNVAVAAAILLYEL 143
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
148-301 |
5.95e-36 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 127.26 E-value: 5.95e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 148 LVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSC-PLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTvg 226
Cdd:pfam00588 4 VVLDNIQDPGNLGAIIRTAAAFGADGLILVEPRSAdPYNPKAIRASAGALFHLPLVVVDNLEEALKDLKEAGYAVVAT-- 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 40068479 227 cpsteDPQSSEIPimsclEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTIlPrrqLPPGLESLNVSVAAGILLH 301
Cdd:pfam00588 82 -----SLGGKSLY-----EIDFPKKVALVFGNEGTGLSNEVLELCDRLVRI-P---MSGDVESLNVAVAAAIALY 142
|
|
| PRK11181 |
PRK11181 |
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; |
88-307 |
1.38e-26 |
|
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;
Pssm-ID: 183021 [Multi-domain] Cd Length: 244 Bit Score: 105.82 E-value: 1.38e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 88 LLRMAEARDIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLRPRPWRE-----AGEASPgddpqqLWLVLDGIQDPRNFGAV 162
Cdd:PRK11181 39 LINELEAQGIVIQLANRQTLDEKAEGAVHQGIIARVKPGRQLQENDlpdllASLEQP------FLLILDGVTDPHNLGAC 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 163 LRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGcPSTEDPQSSEIpims 242
Cdd:PRK11181 113 LRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAETVPLIRVTNLARTMRMLQEKNIWIVGTAG-EADHTLYQSKL---- 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 40068479 243 cleflwERPTLLVLGNEGSGLSQEVQASCQLLLTIlPrrqLPPGLESLNVSVAAGILLHSICSQR 307
Cdd:PRK11181 188 ------TGPLALVMGAEGEGMRRLTREHCDELISI-P---MAGSVSSLNVSVATGICLFEAVRQR 242
|
|
| SpoU-like_TrmH |
cd18092 |
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group ... |
148-307 |
4.79e-24 |
|
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the ribose of the universally conserved guanosine 18 (G18) position in tRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349965 Cd Length: 162 Bit Score: 96.38 E-value: 4.79e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 148 LVLDGIQDPRNFGAVLRSAHFLGVDKV-ITSRRNScplTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTvg 226
Cdd:cd18092 19 VVLENVHDPHNASAVLRTCDAFGVQDVhVIEPKNK---FKKNRGVAMGADKWLDVHRHDSTEECLAALKEQGYRIVAT-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 227 cpsteDPQSSEIPIMsclEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTIlprrqlpP--GL-ESLNVSVAAGILLHSI 303
Cdd:cd18092 94 -----SLSPDAVPLD---ELDYTRPTALVFGNEKDGVSEEALAAADERVYI-------PmyGFvESLNVSVAAAIILYEL 158
|
....
gi 40068479 304 CSQR 307
Cdd:cd18092 159 QRQR 162
|
|
| SpoU-like_family |
cd18082 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
148-303 |
6.32e-21 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349955 Cd Length: 145 Bit Score: 87.67 E-value: 6.32e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 148 LVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQT-KAQQGWLVA---G 223
Cdd:cd18082 2 LVLDNIRSPGNIGSIFRTADAFGVEKIYLVGPTADIFDPKAKRTSRGTHFSVPYERVDNFEEYLKSlKEEGYPLIGlelT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 224 TVGCPSTEdpqsseipimscLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTIlPRRqlpPGLESLNVSVAAGILLHSI 303
Cdd:cd18082 82 DGSIPLSE------------FKFKKPKKIALIFGNERSGLSPELLALCDYTVHI-PMS---GKNSSLNVSVATGIALYEF 145
|
|
| SpoU-like_RNA-MTase |
cd18109 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
148-300 |
3.67e-20 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349982 Cd Length: 141 Bit Score: 85.28 E-value: 3.67e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 148 LVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQtkAQQGWLVAGTvgc 227
Cdd:cd18109 3 LALDGIQDPGNLGTIIRTADWFGIRQIICSPDTVDPYNPKVVQASMGSIFRVQIHYTDLPALLAE--LKKAFPVYGA--- 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 40068479 228 psteDPQSSEIpimscLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTIlPRRqlPPGLESLNVSVAAGILL 300
Cdd:cd18109 78 ----DLDGENL-----YEFTLPEKGILVMGNEGHGISPEVLKLLTHRLTI-PRY--GKGAESLNVAVATAILL 138
|
|
| SpoU-like |
cd18097 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
146-300 |
2.68e-18 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349970 Cd Length: 144 Bit Score: 80.30 E-value: 2.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 146 LWLVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225
Cdd:cd18097 1 LVVVLDNLRSAHNVGSIFRTADAAGVEKIYLCGYTPTPPHPKVAKTALGAEESVPWEHFEDTLEAVRALKARGYTIIALE 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 40068479 226 GCPSTEDPQsseipimsclEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTIlPRRqlppGLE-SLNVSVAAGILL 300
Cdd:cd18097 81 TTENSVPLH----------EARLPRPLALVLGNEVRGVSPEVLALCDAVVEI-PMF----GRKnSLNVAVAAAVAL 141
|
|
| SpoU-like |
cd18096 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
146-302 |
1.95e-16 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349969 Cd Length: 140 Bit Score: 74.94 E-value: 1.95e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 146 LWLVLDGIQDPRNFGAVLRSAHFLGVDKV-ITSRRnscPLTPVVSKSSAGAMEVMDVFSTDDLTGFLqtkAQQGWLVagt 224
Cdd:cd18096 1 LYLVLHNVAKRHNIGTIVRSANAFGVKEVhLVGRR---KFNPFGAMGTDRHVKFRHFDTLAEAKEYL---KERGIRL--- 71
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 40068479 225 VGCPSTEDPQSSEipimsclEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTIlprRQLPPGLESLNVSVAAGILLHS 302
Cdd:cd18096 72 VGVEIVPGAEPIE-------THPFPGDTAFVLGNEGTGLSDEQLAICDGFVYI---PQYGSGTASLNVSVAASIVLHH 139
|
|
| SpoU_sub_bind |
pfam08032 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
51-127 |
1.77e-14 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 429793 [Multi-domain] Cd Length: 74 Bit Score: 67.65 E-value: 1.77e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 40068479 51 LLFGMTPCLLALQAaRRSVARLLLQAGKAGLQGKraELLRMAEARDIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLR 127
Cdd:pfam08032 1 LIYGRHAVLEALKS-GPEIKKLYLTEGRRDPRLK--ELLKLAKERGIKVEEVDRKKLDKLSGTANHQGVVAEVKPYE 74
|
|
| PRK10864 |
PRK10864 |
putative methyltransferase; Provisional |
116-300 |
1.72e-11 |
|
putative methyltransferase; Provisional
Pssm-ID: 236779 [Multi-domain] Cd Length: 346 Bit Score: 64.41 E-value: 1.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 116 HQGVCMEVsplRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRS-AHFlGVDKVITSrrnscplTPVVSKSSA- 193
Cdd:PRK10864 172 HGGVCFLI---KKRNGTDVQQWLAQAGAQDCVLALEDVGNPHNLGGIMRScAHF-GVKGVVVQ-------DAALLESGAa 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 194 -----GAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCPSTEDPQSsEIPimscleflweRPTLLVLGNEGSGLSQEVQ 268
Cdd:PRK10864 241 irtaeGGAEHVQPITGDSFVDVLDDFRQAGYTIVTTSSHKGTPLFKA-SLP----------AKMVLVLGQEYDGLSDAAR 309
|
170 180 190
....*....|....*....|....*....|....*
gi 40068479 269 ASCQLLLTIlprrqlpPG---LESLNVSVAAGILL 300
Cdd:PRK10864 310 QQGDLSVSI-------DGtgnVESLNVSVATGVLL 337
|
|
| SpoU-like_AviRb |
cd18107 |
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes ... |
146-303 |
2.79e-11 |
|
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes methylates the 2'-O atom of U2479 of the 23S ribosomal RNA. AviRb is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349980 Cd Length: 148 Bit Score: 60.87 E-value: 2.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 146 LWLVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAG---AMEVMDVFSTDDLTGFLQT--KAQQGWL 220
Cdd:cd18107 1 LVVLFDRPTSPGNLGTIIRSADALGAHGLVVTGHAADVYDPKTIRASTGslfSLPIVRVPSNRELEDWVEArkARGTPLQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 221 VAGTvgcpstedpqsSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTIlprrQLPPGLESLNVSVAAGILL 300
Cdd:cd18107 81 LVGT-----------DEHGDHQIADHDFTRPTLLLIGNETAGLSAAWRELCDETVSI----PMAGSASSLNAACAASIFL 145
|
...
gi 40068479 301 HSI 303
Cdd:cd18107 146 YEA 148
|
|
| SpoU-like_RNMTL1 |
cd18106 |
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) ... |
148-300 |
1.87e-10 |
|
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) catalyzes the methylation of 2'-O-ribose residues G1370 to GmG residue of the mitochondrial 16S rRNA. RNMTL1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349979 Cd Length: 148 Bit Score: 58.42 E-value: 1.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 148 LVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGA---MEVMDVFSTDDLTGFLQTKAQqgWLVAgt 224
Cdd:cd18106 3 VICDNIRDPGNLGSILRSAAAAGCSKVLLTKGCVDPWEPKVLRAGAGAhfrLPIYGNLSWDDIPNYLPDDSK--VFLA-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 225 vgcpstedpqSSEIPIMSCLEFLWER-PTLLVLGNEGSGLSQEVQASCQLL----LTIlPrrqLPPGLESLNVSVAAGIL 299
Cdd:cd18106 79 ----------DNNLPVQPYDSIDYCSgPIVLVIGGETHGVSPEAYKLAHSTggsrVHI-P---LANGVDSLNSAVAASIL 144
|
.
gi 40068479 300 L 300
Cdd:cd18106 145 L 145
|
|
| SpoU_sub_bind |
smart00967 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
57-125 |
4.62e-09 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 214943 [Multi-domain] Cd Length: 70 Bit Score: 52.15 E-value: 4.62e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 40068479 57 PCLLALQAARRsVARLLLQAGkagLQGKRAELLRMAEARDIPVLRPRRQKLDTMCRYQVHQGVCMEVSP 125
Cdd:smart00967 6 AVEEALKSGRR-IKELYLTEG---RAERLKELLKLAKERGIKVIEVSKKELDKLSGTANHQGVVAVVKP 70
|
|
| SpoU-like_TRM3-like |
cd18091 |
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O) ... |
153-301 |
2.56e-08 |
|
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O)-methyltransferase TRM3 catalyzes the formation of 2'-O-methylguanosine at position 18 (Gm18) in various tRNAs. TRM3 is similar to C-terminal domain of TAR (HIV-1) RNA binding protein 1 (TARBP1), a protein binding to TAR, which functions as a RNA regulatory signal by forming a stable stem-loop structure to which transactivator protein Tat binds. The role of TARBP1 is believed to be to disengage RNA polymerase II from TAR during transcriptional elongation. TRM3 and the C-terminal methyltransferase domain of TARBP1 are members of the SPOUT methyltransferase superfamily.
Pssm-ID: 349964 Cd Length: 145 Bit Score: 52.15 E-value: 2.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 153 IQDPRNFGAVLRSAHFLGVDKVITSRRNSC--PLTPVVSKSSAGAMEVMDVfSTDDLTGFLQTKAQQGWLVAGTvgcpst 230
Cdd:cd18091 8 IDKPPNLGGLCRTCEIFGVSKLVLPNLAVVedKQFKALSVSAEKWLPIEEV-KPEDLLPYLKEKKQEGYTIVGL------ 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 40068479 231 EdpQSSEIPIMSclEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTIlPrrQLppGL-ESLNVSVAAGILLH 301
Cdd:cd18091 81 E--QTANSVSLH--DFQFPKKTVLVLGNEKEGIPAELLSLLDVCVEI-P--QL--GViRSLNVHVSGAIAIY 143
|
|
| SpoU-like_NHR |
cd18108 |
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) ... |
148-301 |
6.76e-06 |
|
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) confers resistance to the thiazole antibiotic nosiheptide via catalyzing 2'O-methylation of 23S rRNA at the nucleotide A1067. NHR is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349981 Cd Length: 144 Bit Score: 45.16 E-value: 6.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 148 LVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNscpLTPV----VSKSSAGAMEVMDVFSTD--DLTGFLQTKAQQGWLV 221
Cdd:cd18108 3 VVLDGVRIVGNIGAIVRTSLALGAAGIVLVDSD---LATVadrrLLRASRGYVFSLPVVLADreEAVAFLRDNDIPLMTL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 222 A--GTVGCPSTEDPQSseipimscleflwerPTLLVLGNEGSGLSQEVQASCQLLLTIlprrQLPPGLESLNVSVAAGIL 299
Cdd:cd18108 80 DadGDVPVKELGDRPD---------------RLALVFGSEKGGPSGLFEEAAAGTVSI----PMSSSTESLNVSVSAGIA 140
|
..
gi 40068479 300 LH 301
Cdd:cd18108 141 LH 142
|
|
| SpoU-like_TrmJ |
cd18093 |
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl ... |
146-303 |
1.38e-05 |
|
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 32 in both tRNASer1 and tRNAGln2. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349966 Cd Length: 153 Bit Score: 44.41 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 146 LWLVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMD---VFST-----DDLTgflqtkaqq 217
Cdd:cd18093 1 IRVVLVEPQHPGNIGAVARAMKNFGLSDLRLVNPRCDDPEEAARALASGAEDVLEnakVYDTleealADCD--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 218 gwLVAGTVGCPSTEDPQS---SEIPIMSClEFLWERPTLLVLGNEGSGLS-QEVQAsCQLLLTIlprrQLPPGLESLNVS 293
Cdd:cd18093 72 --LVVATTARPRGLRRPLltpRELAELLK-EHAAGGKVALVFGREDSGLTnEELAL-CDLLVTI----PTNPEYPSLNLA 143
|
170
....*....|
gi 40068479 294 VAAGILLHSI 303
Cdd:cd18093 144 QAVAIVLYEL 153
|
|
| SpoU-like_TrmL |
cd18094 |
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL ... |
254-300 |
5.07e-04 |
|
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349967 Cd Length: 145 Bit Score: 39.74 E-value: 5.07e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 40068479 254 LVLGNEGSGLSQEVQASC-QLLLTIlPrrqLPPGLESLNVSVAAGILL 300
Cdd:cd18094 95 LVFGRESTGLPEEILDAFpDRRLRI-P---MRPKVRSLNLSNSVAIVL 138
|
|
| TrmL |
COG0219 |
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ... |
254-300 |
1.23e-03 |
|
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]; tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 439989 Cd Length: 153 Bit Score: 38.86 E-value: 1.23e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 40068479 254 LVLGNEGSGLSQEV-QASCQLLLTIlPRRqlpPGLESLNVSVAAGILL 300
Cdd:COG0219 97 LLFGRETAGLPEEVlAAPADQRLRI-PMR---PGVRSLNLSNAVAIVL 140
|
|
| TrmJ |
COG0565 |
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ... |
145-338 |
3.33e-03 |
|
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ribosomal structure and biogenesis]; tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440331 [Multi-domain] Cd Length: 237 Bit Score: 38.56 E-value: 3.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 145 QLWLVLDGIQDPRNFGAVLRSAHFLGVDK-VITSRRnsCPLTPVVSKSSAGAMEVMD---VFST-----DDLTgflqtka 215
Cdd:COG0565 3 NIRVVLVEPQHPGNIGAAARAMKNFGLSDlRLVNPR--GWPDEEARAMASGADDVLEnarVVDTleealADCD------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068479 216 qqgwLVAGTvgcpsTEDPQSSEIPIMS---CLEFLWER----PTLLVLGNEGSGLSQEVQASCQLLLTIlprrqlP--PG 286
Cdd:COG0565 74 ----LVVGT-----TARPRELRKPVLTpreAAEELLARaaggKVALVFGRERSGLTNEELALCDALVTI------PtnPE 138
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 40068479 287 LESLNVSVAAGILLHSIcsqRKGFpteGERRQLLQDPQEPSARSEGL-SMAQH 338
Cdd:COG0565 139 YPSLNLAQAVQVVAYEL---RKAA---LEAPPLPPPPEPEPATAEELeGLYEH 185
|
|
| |
