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Conserved domains on  [gi|18859597|ref|NP_077182|]
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NADH dehydrogenase [ubiquinone] 1 subunit C2 [Mus musculus]

Protein Classification

NDUF_C2 domain-containing protein( domain architecture ID 10533920)

NDUF_C2 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NDUF_C2 pfam06374
NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several ...
 11-120 1.66e-61

NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins (EC:1.6.5.3).


:

Pssm-ID: 428908  Cd Length: 109  Bit Score: 183.27  E-value: 1.66e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18859597    11 LKFLPDEARSLPPPKLNDPRLVYMGLLGYCTGLMDNMLRMRPVMrAGLHRQLLFVTSFVFAGYFYLKRQNYLYAVKDHDM 90
Cdd:pfam06374   1 LELLPDEGRSLPPPLLDDWNPLYGGFLGFGAALLVNWGRRRPVL-SGIHRHILFATIGGFLGYYLDKRRNYYYAERDADL 79

                          90       100       110
                  ....*....|....*....|....*....|
gi 18859597    91 FGYIKLHPEDFPEKEKKTYAEILEPFHPVR 120
Cdd:pfam06374  80 RHYIELHPEDFPEKERKKYAEVLESWHPIR 109
 
Name Accession Description Interval E-value
NDUF_C2 pfam06374
NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several ...
 11-120 1.66e-61

NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins (EC:1.6.5.3).


Pssm-ID: 428908  Cd Length: 109  Bit Score: 183.27  E-value: 1.66e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18859597    11 LKFLPDEARSLPPPKLNDPRLVYMGLLGYCTGLMDNMLRMRPVMrAGLHRQLLFVTSFVFAGYFYLKRQNYLYAVKDHDM 90
Cdd:pfam06374   1 LELLPDEGRSLPPPLLDDWNPLYGGFLGFGAALLVNWGRRRPVL-SGIHRHILFATIGGFLGYYLDKRRNYYYAERDADL 79

                          90       100       110
                  ....*....|....*....|....*....|
gi 18859597    91 FGYIKLHPEDFPEKEKKTYAEILEPFHPVR 120
Cdd:pfam06374  80 RHYIELHPEDFPEKERKKYAEVLESWHPIR 109
 
Name Accession Description Interval E-value
NDUF_C2 pfam06374
NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several ...
 11-120 1.66e-61

NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins (EC:1.6.5.3).


Pssm-ID: 428908  Cd Length: 109  Bit Score: 183.27  E-value: 1.66e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18859597    11 LKFLPDEARSLPPPKLNDPRLVYMGLLGYCTGLMDNMLRMRPVMrAGLHRQLLFVTSFVFAGYFYLKRQNYLYAVKDHDM 90
Cdd:pfam06374   1 LELLPDEGRSLPPPLLDDWNPLYGGFLGFGAALLVNWGRRRPVL-SGIHRHILFATIGGFLGYYLDKRRNYYYAERDADL 79

                          90       100       110
                  ....*....|....*....|....*....|
gi 18859597    91 FGYIKLHPEDFPEKEKKTYAEILEPFHPVR 120
Cdd:pfam06374  80 RHYIELHPEDFPEKERKKYAEVLESWHPIR 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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