|
Name |
Accession |
Description |
Interval |
E-value |
| UbiH |
COG0654 |
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ... |
24-364 |
4.32e-30 |
|
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 440419 [Multi-domain] Cd Length: 326 Bit Score: 119.66 E-value: 4.32e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 24 ACFLAKRNFQVDVYEAREDIRVanfmRGRSInlALSYRGRQALKAVGLEDQIVSKGVPMKARMIH-SLSGKK-SAIPYG- 100
Cdd:COG0654 19 ALALARAGIRVTVVERAPPPRP----DGRGI--ALSPRSLELLRRLGLWDRLLARGAPIRGIRVRdGSDGRVlARFDAAe 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 101 NKSQYILSISREKLNKDLLTAVESYpNAKVHFGHKLSKCCPEEGILTML---GpnkvpRDITCDLIVGCDGAYSTVRAHL 177
Cdd:COG0654 93 TGLPAGLVVPRADLERALLEAARAL-GVELRFGTEVTGLEQDADGVTVTladG-----RTLRADLVVGADGARSAVRRLL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 178 MKKPR-FDYSQQYIphgymeltippkngeyamepnclhiWprnafmmialpnmdksftctlfmsfeefeklpthSDVLDF 256
Cdd:COG0654 167 GIGFTgRDYPQRAL-------------------------W----------------------------------AGVRTE 187
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 257 FQKNFPDAIPLMGEqalMRDFFLLPAQPMISVKCSPFHlKSRCVLMGDAAHAIVPFFGQGMNAGFEDCLVFDELMDKF-- 334
Cdd:COG0654 188 LRARLAAAGPRLGE---LLELSPRSAFPLRRRRAERWR-RGRVVLLGDAAHTMHPLGGQGANLALRDAAALAWKLAAAlr 263
|
330 340 350
....*....|....*....|....*....|
gi 11024672 335 NNDLSVCLPEFSRFRIPDDHAISDLSMYNY 364
Cdd:COG0654 264 GRDDEAALARYERERRPRAARVQRAADALG 293
|
|
| Ubi-OHases |
TIGR01988 |
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a ... |
24-356 |
1.13e-09 |
|
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]
Pssm-ID: 273913 [Multi-domain] Cd Length: 385 Bit Score: 59.91 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 24 ACFLAKRNFQVDVYEAREDIRVAN-FMRGRSInlALSYRGRQALKAVGLEDQIVskgvPMKARMIHSL----SGKKSAIP 98
Cdd:TIGR01988 15 ALALARSGLKVALIEATPLPAPADpGFDNRVS--ALSAASIRLLEKLGVWDKIE----PARAQPIRDIhvsdGGSFGALR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 99 YgNKSQYILS-----ISREKLNKDLLTAVESYPNAKVHFGHKLS--KCCPEEGILTmLGPNKVprdITCDLIVGCDGAYS 171
Cdd:TIGR01988 89 F-DADEIGLEalgyvVENRVLQQALWERLQELPNVTLLCPARVVelPRHSDHVELT-LDDGQQ---LRARLLVGADGANS 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 172 TVRAHL-MKKPRFDYSQQYI--------PHGY--MELTIPpkNGEYAM----EPNCLHIW---PRNAFMMIALPnmdksf 233
Cdd:TIGR01988 164 KVRQLAgIPTTGWDYGQSAVvanvkherPHQGtaWERFTP--TGPLALlplpDNRSSLVWtlpPEEAERLLALS------ 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 234 tctlfmsFEEFeklpthsdvLDFFQKNFPdaiPLMGEQALMRDFFLLPAQPMISVKcspfHLKSRCVLMGDAAHAIVPFF 313
Cdd:TIGR01988 236 -------DEEF---------LAELQRAFG---SRLGAITLVGERHAFPLSLTHAKR----YVAPRLALIGDAAHTIHPLA 292
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 11024672 314 GQGMNAGFED------CLVFDELMDKFNNDLSVcLPEFSRFRIPDDHAI 356
Cdd:TIGR01988 293 GQGLNLGLRDvaalaeVLEDARRRGEDIGSLRV-LQRYERRRRFDNAAM 340
|
|
| FAD_binding_3 |
pfam01494 |
FAD binding domain; This domain is involved in FAD binding in a number of enzymes. |
66-323 |
1.43e-09 |
|
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
Pssm-ID: 396193 [Multi-domain] Cd Length: 348 Bit Score: 59.65 E-value: 1.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 66 LKAVGLEDQIVSKGVPmKARMIHSLSGKKSAIPYGNKS--QYILSISREKLNKDLLTAVESYPnAKVHFGHKL-SKCCPE 142
Cdd:pfam01494 53 LRQAGLEDRILAEGVP-HEGMGLAFYNTRRRADLDFLTspPRVTVYPQTELEPILVEHAEARG-AQVRFGTEVlSLEQDG 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 143 EGILTML--GPNKVPRDITCDLIVGCDGAYSTVRAHLmkkpRFDY-SQQYIPHGYMELTIPPKNGEYAMEPNCLHIWPRN 219
Cdd:pfam01494 131 DGVTAVVrdRRDGEEYTVRAKYLVGCDGGRSPVRKTL----GIEFeGFEGVPFGSLDVLFDAPDLSDPVERAFVHYLIYA 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 220 A----FMMIALPNMDKS---FTCTLFMSFEEFEKLPTHSDVldffqknFPDAIPLMGEQALMRDFFLLPAQPMISVKCSP 292
Cdd:pfam01494 207 PhsrgFMVGPWRSAGREryyVQVPWDEEVEERPEEFTDEEL-------KQRLRSIVGIDLALVEILWKSIWGVASRVATR 279
|
250 260 270
....*....|....*....|....*....|.
gi 11024672 293 FHlKSRCVLMGDAAHAIVPFFGQGMNAGFED 323
Cdd:pfam01494 280 YR-KGRVFLAGDAAHIHPPTGGQGLNTAIQD 309
|
|
| mhpA |
PRK06183 |
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase; |
118-323 |
1.36e-08 |
|
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;
Pssm-ID: 235727 [Multi-domain] Cd Length: 500 Bit Score: 56.84 E-value: 1.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 118 LLTAVESYPNAKVHFGHKLSKCCPEEG--ILTMLGPNKVPRDITCDLIVGCDGAYSTVRaHLMKKPRFDYSQqyiPHGYM 195
Cdd:PRK06183 119 LRAGLARFPHVRVRFGHEVTALTQDDDgvTVTLTDADGQRETVRARYVVGCDGANSFVR-RTLGVPFEDLTF---PERWL 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 196 ELTIPPKNGEYAMEPNCLHIWPRNAFMMIALPNMDKSFtctlfmsfeEFEKLP--THSDVLDffqknfPDAIplmgeQAL 273
Cdd:PRK06183 195 VVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRW---------EFMLLPgeTEEQLAS------PENV-----WRL 254
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 11024672 274 MRDFFLLPAQP-MISVKCSPFHL-------KSRCVLMGDAAHAIVPFFGQGMNAGFED 323
Cdd:PRK06183 255 LAPWGPTPDDAeLIRHAVYTFHArvadrwrSGRVLLAGDAAHLMPPFAGQGMNSGIRD 312
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| UbiH |
COG0654 |
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ... |
24-364 |
4.32e-30 |
|
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 440419 [Multi-domain] Cd Length: 326 Bit Score: 119.66 E-value: 4.32e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 24 ACFLAKRNFQVDVYEAREDIRVanfmRGRSInlALSYRGRQALKAVGLEDQIVSKGVPMKARMIH-SLSGKK-SAIPYG- 100
Cdd:COG0654 19 ALALARAGIRVTVVERAPPPRP----DGRGI--ALSPRSLELLRRLGLWDRLLARGAPIRGIRVRdGSDGRVlARFDAAe 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 101 NKSQYILSISREKLNKDLLTAVESYpNAKVHFGHKLSKCCPEEGILTML---GpnkvpRDITCDLIVGCDGAYSTVRAHL 177
Cdd:COG0654 93 TGLPAGLVVPRADLERALLEAARAL-GVELRFGTEVTGLEQDADGVTVTladG-----RTLRADLVVGADGARSAVRRLL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 178 MKKPR-FDYSQQYIphgymeltippkngeyamepnclhiWprnafmmialpnmdksftctlfmsfeefeklpthSDVLDF 256
Cdd:COG0654 167 GIGFTgRDYPQRAL-------------------------W----------------------------------AGVRTE 187
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 257 FQKNFPDAIPLMGEqalMRDFFLLPAQPMISVKCSPFHlKSRCVLMGDAAHAIVPFFGQGMNAGFEDCLVFDELMDKF-- 334
Cdd:COG0654 188 LRARLAAAGPRLGE---LLELSPRSAFPLRRRRAERWR-RGRVVLLGDAAHTMHPLGGQGANLALRDAAALAWKLAAAlr 263
|
330 340 350
....*....|....*....|....*....|
gi 11024672 335 NNDLSVCLPEFSRFRIPDDHAISDLSMYNY 364
Cdd:COG0654 264 GRDDEAALARYERERRPRAARVQRAADALG 293
|
|
| FixC |
COG0644 |
Dehydrogenase (flavoprotein) [Energy production and conversion]; |
24-216 |
1.69e-13 |
|
Dehydrogenase (flavoprotein) [Energy production and conversion];
Pssm-ID: 440409 [Multi-domain] Cd Length: 281 Bit Score: 70.77 E-value: 1.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 24 ACFLAKRNFQVDVYEAREDIRVANfMRGrsinlALSYRGRQALKAVGLEDQIVSkgvPMKARMIHSLSGKKSAIPYGNKS 103
Cdd:COG0644 9 ARRLARAGLSVLLLEKGSFPGDKI-CGG-----GLLPRALEELEPLGLDEPLER---PVRGARFYSPGGKSVELPPGRGG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 104 QYIlsISREKLNKDLLTAVESYpNAKVHFGHKLSKCCPEEGILTMLGPNkvPRDITCDLIVGCDGAYSTVRAHLMKKPRF 183
Cdd:COG0644 80 GYV--VDRARFDRWLAEQAEEA-GAEVRTGTRVTDVLRDDGRVVVRTGD--GEEIRADYVVDADGARSLLARKLGLKRRS 154
|
170 180 190
....*....|....*....|....*....|...
gi 11024672 184 DYSQQYIpHGYMELTIPPKNGEYamEPNCLHIW 216
Cdd:COG0644 155 DEPQDYA-LAIKEHWELPPLEGV--DPGAVEFF 184
|
|
| Ubi-OHases |
TIGR01988 |
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a ... |
24-356 |
1.13e-09 |
|
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]
Pssm-ID: 273913 [Multi-domain] Cd Length: 385 Bit Score: 59.91 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 24 ACFLAKRNFQVDVYEAREDIRVAN-FMRGRSInlALSYRGRQALKAVGLEDQIVskgvPMKARMIHSL----SGKKSAIP 98
Cdd:TIGR01988 15 ALALARSGLKVALIEATPLPAPADpGFDNRVS--ALSAASIRLLEKLGVWDKIE----PARAQPIRDIhvsdGGSFGALR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 99 YgNKSQYILS-----ISREKLNKDLLTAVESYPNAKVHFGHKLS--KCCPEEGILTmLGPNKVprdITCDLIVGCDGAYS 171
Cdd:TIGR01988 89 F-DADEIGLEalgyvVENRVLQQALWERLQELPNVTLLCPARVVelPRHSDHVELT-LDDGQQ---LRARLLVGADGANS 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 172 TVRAHL-MKKPRFDYSQQYI--------PHGY--MELTIPpkNGEYAM----EPNCLHIW---PRNAFMMIALPnmdksf 233
Cdd:TIGR01988 164 KVRQLAgIPTTGWDYGQSAVvanvkherPHQGtaWERFTP--TGPLALlplpDNRSSLVWtlpPEEAERLLALS------ 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 234 tctlfmsFEEFeklpthsdvLDFFQKNFPdaiPLMGEQALMRDFFLLPAQPMISVKcspfHLKSRCVLMGDAAHAIVPFF 313
Cdd:TIGR01988 236 -------DEEF---------LAELQRAFG---SRLGAITLVGERHAFPLSLTHAKR----YVAPRLALIGDAAHTIHPLA 292
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 11024672 314 GQGMNAGFED------CLVFDELMDKFNNDLSVcLPEFSRFRIPDDHAI 356
Cdd:TIGR01988 293 GQGLNLGLRDvaalaeVLEDARRRGEDIGSLRV-LQRYERRRRFDNAAM 340
|
|
| FAD_binding_3 |
pfam01494 |
FAD binding domain; This domain is involved in FAD binding in a number of enzymes. |
66-323 |
1.43e-09 |
|
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
Pssm-ID: 396193 [Multi-domain] Cd Length: 348 Bit Score: 59.65 E-value: 1.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 66 LKAVGLEDQIVSKGVPmKARMIHSLSGKKSAIPYGNKS--QYILSISREKLNKDLLTAVESYPnAKVHFGHKL-SKCCPE 142
Cdd:pfam01494 53 LRQAGLEDRILAEGVP-HEGMGLAFYNTRRRADLDFLTspPRVTVYPQTELEPILVEHAEARG-AQVRFGTEVlSLEQDG 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 143 EGILTML--GPNKVPRDITCDLIVGCDGAYSTVRAHLmkkpRFDY-SQQYIPHGYMELTIPPKNGEYAMEPNCLHIWPRN 219
Cdd:pfam01494 131 DGVTAVVrdRRDGEEYTVRAKYLVGCDGGRSPVRKTL----GIEFeGFEGVPFGSLDVLFDAPDLSDPVERAFVHYLIYA 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 220 A----FMMIALPNMDKS---FTCTLFMSFEEFEKLPTHSDVldffqknFPDAIPLMGEQALMRDFFLLPAQPMISVKCSP 292
Cdd:pfam01494 207 PhsrgFMVGPWRSAGREryyVQVPWDEEVEERPEEFTDEEL-------KQRLRSIVGIDLALVEILWKSIWGVASRVATR 279
|
250 260 270
....*....|....*....|....*....|.
gi 11024672 293 FHlKSRCVLMGDAAHAIVPFFGQGMNAGFED 323
Cdd:pfam01494 280 YR-KGRVFLAGDAAHIHPPTGGQGLNTAIQD 309
|
|
| mhpA |
PRK06183 |
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase; |
118-323 |
1.36e-08 |
|
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;
Pssm-ID: 235727 [Multi-domain] Cd Length: 500 Bit Score: 56.84 E-value: 1.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 118 LLTAVESYPNAKVHFGHKLSKCCPEEG--ILTMLGPNKVPRDITCDLIVGCDGAYSTVRaHLMKKPRFDYSQqyiPHGYM 195
Cdd:PRK06183 119 LRAGLARFPHVRVRFGHEVTALTQDDDgvTVTLTDADGQRETVRARYVVGCDGANSFVR-RTLGVPFEDLTF---PERWL 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 196 ELTIPPKNGEYAMEPNCLHIWPRNAFMMIALPNMDKSFtctlfmsfeEFEKLP--THSDVLDffqknfPDAIplmgeQAL 273
Cdd:PRK06183 195 VVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRW---------EFMLLPgeTEEQLAS------PENV-----WRL 254
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 11024672 274 MRDFFLLPAQP-MISVKCSPFHL-------KSRCVLMGDAAHAIVPFFGQGMNAGFED 323
Cdd:PRK06183 255 LAPWGPTPDDAeLIRHAVYTFHArvadrwrSGRVLLAGDAAHLMPPFAGQGMNSGIRD 312
|
|
| PRK06753 |
PRK06753 |
hypothetical protein; Provisional |
24-351 |
3.00e-08 |
|
hypothetical protein; Provisional
Pssm-ID: 168661 [Multi-domain] Cd Length: 373 Bit Score: 55.47 E-value: 3.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 24 ACFLAKRNFQVDVYEAREDIRVAnfmrGRSINLALSyrGRQALKAVGLEDQIVSKGVPMKARMIHSLSGK---KSAIPYG 100
Cdd:PRK06753 16 AALLQEQGHEVKVFEKNESVKEV----GAGIGIGDN--VIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTllnKVKLKSN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 101 NKSqyiLSISReklnKDLLTAVESY-PNAKVHFGHKLSKCCPEEGILTMLGPNKVPRDItcDLIVGCDGAYSTVRAHLMK 179
Cdd:PRK06753 90 TLN---VTLHR----QTLIDIIKSYvKEDAIFTGKEVTKIENETDKVTIHFADGESEAF--DLCIGADGIHSKVRQSVNA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 180 KPRFDYSqqyiphGY-----MELTIPPKNGEYAMEpnclhIW-PRNAFMMIALPNMDKSFtctlFMSFEEFEKLPTHSDV 253
Cdd:PRK06753 161 DSKVRYQ------GYtcfrgLIDDIDLKLPDCAKE-----YWgTKGRFGIVPLLNNQAYW----FITINAKERDPKYSSF 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 254 ----LDFFQKNFPDAIPLMGEQA-----LMRDFFLLpaQPMISvkcspfHLKSRCVLMGDAAHAIVPFFGQGMNAGFEDC 324
Cdd:PRK06753 226 gkphLQAYFNHYPNEVREILDKQsetgiLHHDIYDL--KPLKS------FVYGRIVLLGDAAHATTPNMGQGAGQAMEDA 297
|
330 340
....*....|....*....|....*...
gi 11024672 325 LVfdeLMDKFNN-DLSVCLPEFSRFRIP 351
Cdd:PRK06753 298 IV---LANCLNAyDFEKALQRYDKIRVK 322
|
|
| PRK07364 |
PRK07364 |
FAD-dependent hydroxylase; |
118-323 |
4.41e-08 |
|
FAD-dependent hydroxylase;
Pssm-ID: 236001 [Multi-domain] Cd Length: 415 Bit Score: 55.03 E-value: 4.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 118 LLTAVESYPNakvhfghkLSKCCPEEGILTMLGPNKV---------PRDITCDLIVGCDGAYSTVRAHLMKKPR-FDYSQ 187
Cdd:PRK07364 127 LQEFLQSCPN--------ITWLCPAEVVSVEYQQDAAtvtleiegkQQTLQSKLVVAADGARSPIRQAAGIKTKgWKYWQ 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 188 QYI--------PHGYMeltippkngeyAMEpnclHIWPRNAFMMIALPNMDKSFTCTlfMSFEEFEKLPT--HSDVLDFF 257
Cdd:PRK07364 199 SCVtatvkheaPHNDI-----------AYE----RFWPSGPFAILPLPGNRCQIVWT--APHAQAKALLAlpEAEFLAEL 261
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 11024672 258 QKNFPDaipLMGEQALMRDFFLLPAQPMISVKcspfHLKSRCVLMGDAAHAIVPFFGQGMNAGFED 323
Cdd:PRK07364 262 QQRYGD---QLGKLELLGDRFLFPVQLMQSDR----YVQHRLALVGDAAHCCHPVGGQGLNLGIRD 320
|
|
| COQ6 |
TIGR01989 |
ubiquinone biosynthesis monooxygenase COQ6; This model represents the monooxygenase ... |
156-323 |
1.88e-07 |
|
ubiquinone biosynthesis monooxygenase COQ6; This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Pssm-ID: 273914 [Multi-domain] Cd Length: 437 Bit Score: 53.22 E-value: 1.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 156 RDITCDLIVGCDGAYSTVR-AHLMKKPRFDYSQQYIPhGYMELTIPPKN----------GEYAMEP----NCLHIW---P 217
Cdd:TIGR01989 168 QVLYTKLLIGADGSNSNVRkAANIDTTGWNYNQHAVV-ATLKLEEATENdvawqrflptGPIALLPlpdnNSTLVWstsP 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 218 RNAFMMIALPnmDKSFTCTLFMSFE-EFEKLPtHSDVLDFFQKNFPDAIPLMGEQAlMRDFFLLPAqpMISVKCS----- 291
Cdd:TIGR01989 247 EEALRLLSLP--PEDFVDALNAAFDlGYSDHP-YSYLLDYAMEKLNEDIGFRTEGS-KSCFQVPPR--VIGVVDKsraaf 320
|
170 180 190
....*....|....*....|....*....|....*....
gi 11024672 292 PFHL-------KSRCVLMGDAAHAIVPFFGQGMNAGFED 323
Cdd:TIGR01989 321 PLGLghadeyvTKRVALVGDAAHRVHPLAGQGVNLGFGD 359
|
|
| PRK08849 |
PRK08849 |
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional |
296-353 |
2.68e-07 |
|
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Pssm-ID: 181564 [Multi-domain] Cd Length: 384 Bit Score: 52.47 E-value: 2.68e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 11024672 296 KSRCVLMGDAAHAIVPFFGQGMNAGFEDCLVFDELMDKfNNDLSVCLPE-FSRFRIPDD 353
Cdd:PRK08849 278 KNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEK-QGVLNDASFArYERRRRPDN 335
|
|
| PRK06847 |
PRK06847 |
hypothetical protein; Provisional |
27-351 |
2.91e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 235874 [Multi-domain] Cd Length: 375 Bit Score: 52.57 E-value: 2.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 27 LAKRNFQVDVYEAREDIRVAnfmrGRSINL---ALsyrgrQALKAVGLEDQIVSKGVPMKARMIHSLSGKKSA------- 96
Cdd:PRK06847 23 LRRAGIAVDLVEIDPEWRVY----GAGITLqgnAL-----RALRELGVLDECLEAGFGFDGVDLFDPDGTLLAelptprl 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 97 ----IPYGNksqyilSISREKLNKDLLTAVESyPNAKVHFGHKLSKCCP-EEGIltmlgpnkvprDITC--------DLI 163
Cdd:PRK06847 94 agddLPGGG------GIMRPALARILADAARA-AGADVRLGTTVTAIEQdDDGV-----------TVTFsdgttgryDLV 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 164 VGCDGAYSTVRAHLM---KKPRF----------------DYSQQYIP-------------HGYMELTIPPKNGEYaMEPn 211
Cdd:PRK06847 156 VGADGLYSKVRSLVFpdePEPEYtgqgvwravlprpaevDRSLMYLGpttkagvvplsedLMYLFVTEPRPDNPR-IEP- 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 212 clHIWPRnafmmiALPNMDKSFTctlfmsfeefeklpthSDVLDFFQKNFPDAiplmgEQALMRDF--FLLPAqpmisvk 289
Cdd:PRK06847 234 --DTLAA------LLRELLAPFG----------------GPVLQELREQITDD-----AQVVYRPLetLLVPA------- 277
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 11024672 290 csPFHlKSRCVLMGDAAHAIVPFFGQGMNAGFEDCLVFDELMDKfNNDLSVCLPEFSRFRIP 351
Cdd:PRK06847 278 --PWH-RGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELAR-HDSLEAALQAYYARRWE 335
|
|
| PRK06126 |
PRK06126 |
hypothetical protein; Provisional |
118-323 |
1.08e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 235704 [Multi-domain] Cd Length: 545 Bit Score: 51.15 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 118 LLTAVESYPNAKVHFGHKLSKCCP-EEGILTM---LGPNKvPRDITCDLIVGCDGAYSTVRAHL---------------- 177
Cdd:PRK06126 132 LLEHAAAQPGVTLRYGHRLTDFEQdADGVTATvedLDGGE-SLTIRADYLVGCDGARSAVRRSLgisyegtsglqrdlsi 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 178 -MKKPRFdysQQYIPH--GYMELTI-PPKNGEYAmepnclHIWPRNAFMMIALPnmdksftctlfmsFEEFEKLPTHSDV 253
Cdd:PRK06126 211 yIRAPGL---AALVGHdpAWMYWLFnPDRRGVLV------AIDGRDEWLFHQLR-------------GGEDEFTIDDVDA 268
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 11024672 254 LDFFQKnfpdaipLMGEQAlmrDFFLLPAQPMISVK-CSPFHLKSRCVLMGDAAHAIVPFFGQGMNAGFED 323
Cdd:PRK06126 269 RAFVRR-------GVGEDI---DYEVLSVVPWTGRRlVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGD 329
|
|
| PRK07538 |
PRK07538 |
hypothetical protein; Provisional |
24-177 |
2.72e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 236046 [Multi-domain] Cd Length: 413 Bit Score: 49.51 E-value: 2.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 24 ACFLAKRNFQVDVYEAREDIRVAnfmrGRSINLaLSYRGRQaLKAVGLEDQIVSKGVPMKARMIHSLSGKKsaI---PYG 100
Cdd:PRK07538 16 ALTLHQRGIEVVVFEAAPELRPL----GVGINL-LPHAVRE-LAELGLLDALDAIGIRTRELAYFNRHGQR--IwsePRG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 101 NKSQYI---LSISREKLNKDLLTAV-ESYPNAKVHFGHKLSKCCP-EEGILTMLGPN--KVPRDITCDLIVGCDGAYSTV 173
Cdd:PRK07538 88 LAAGYDwpqYSIHRGELQMLLLDAVrERLGPDAVRTGHRVVGFEQdADVTVVFLGDRagGDLVSVRGDVLIGADGIHSAV 167
|
....
gi 11024672 174 RAHL 177
Cdd:PRK07538 168 RAQL 171
|
|
| PRK07045 |
PRK07045 |
putative monooxygenase; Reviewed |
50-356 |
4.14e-06 |
|
putative monooxygenase; Reviewed
Pssm-ID: 136171 [Multi-domain] Cd Length: 388 Bit Score: 48.75 E-value: 4.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 50 RGRSINLA--LSYRGRQALKAVGLEDQIVSKGVPMKARMihSLSGKKSAIPYGNKSQ-----YILSISREKLNKDLLTAV 122
Cdd:PRK07045 39 RNRAQNGAdlLKPSGIGVVRAMGLLDDVFAAGGLRRDAM--RLYHDKELIASLDYRSasalgYFILIPCEQLRRLLLAKL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 123 ESYPNAKVHFGHKLSKCCPEE-GILTML----GPNKVPRditcdLIVGCDGAYSTVRAHLMKKP--RFDYSQqyiPHGYM 195
Cdd:PRK07045 117 DGLPNVRLRFETSIERIERDAdGTVTSVtlsdGERVAPT-----VLVGADGARSMIRDDVLRMPaeRVPYAT---PMAFG 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 196 ELTIPPKngeyAMEPNCLHIwPRNAFMMIALPNMDKSftCTLFMSFEEFEKLPTHSDVL---------DFFQKNFPDAIP 266
Cdd:PRK07045 189 TIALTDS----VRECNRLYV-DSNQGLAYFYPIGDQA--TRLVVSFPADEMQGYLADTTrtkllarlnEFVGDESADAMA 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 267 LMGEQALmrdfflLPAQPMISVKCSPFHlKSRCVLMGDAAHAIVPFFGQGMNAGFEDCLVFDELMDKFNND---LSVCLP 343
Cdd:PRK07045 262 AIGAGTA------FPLIPLGRMNLDRYH-KRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGqiaLADALE 334
|
330
....*....|...
gi 11024672 344 EFSRFRIPDDHAI 356
Cdd:PRK07045 335 RFERIRRPVNEAV 347
|
|
| PRK06185 |
PRK06185 |
FAD-dependent oxidoreductase; |
118-318 |
1.28e-05 |
|
FAD-dependent oxidoreductase;
Pssm-ID: 235729 [Multi-domain] Cd Length: 407 Bit Score: 47.55 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 118 LLTAVESYPNAKVHFGHKLSKCCPEEGI---LTMLGPNKvPRDITCDLIVGCDGAYSTVR--AHLmkKPR-----FDYSq 187
Cdd:PRK06185 114 LAEEASAYPNFTLRMGAEVTGLIEEGGRvtgVRARTPDG-PGEIRADLVVGADGRHSRVRalAGL--EVRefgapMDVL- 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 188 qyiphgYMELTIPPKNGEYAMEpnclHIWPRNafMMIALPNMDKsFTCTLFMSFEEFEKLptHSDVLDFFQKNFPDAIPL 267
Cdd:PRK06185 190 ------WFRLPREPDDPESLMG----RFGPGQ--GLIMIDRGDY-WQCGYVIPKGGYAAL--RAAGLEAFRERVAELAPE 254
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 11024672 268 MGEQAL----MRDFFLLpaqpmiSVKCSpfHLK--SR--CVLMGDAAHAIVPFFGQGMN 318
Cdd:PRK06185 255 LADRVAelksWDDVKLL------DVRVD--RLRrwHRpgLLCIGDAAHAMSPVGGVGIN 305
|
|
| PRK08850 |
PRK08850 |
2-octaprenyl-6-methoxyphenol hydroxylase; Validated |
156-323 |
4.07e-05 |
|
2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Pssm-ID: 236341 [Multi-domain] Cd Length: 405 Bit Score: 45.92 E-value: 4.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 156 RDITCDLIVGCDGAYSTVRaHLMKKP--RFDYSQQYI--------PHGYMELTIPPKNGEYAM----EPN-CLHIWPRNA 220
Cdd:PRK08850 153 QALTAKLVVGADGANSWLR-RQMDIPltHWDYGHSALvanvrtvdPHNSVARQIFTPQGPLAFlpmsEPNmSSIVWSTEP 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024672 221 FMMIALPNMDKS-FTCTLFMSFEEfeKLPTHSDVLDFFqknfpdAIPLMGEQAlmRDFfllpaqpmisvkcspfhLKSRC 299
Cdd:PRK08850 232 LRAEALLAMSDEqFNKALTAEFDN--RLGLCEVVGERQ------AFPLKMRYA--RDF-----------------VRERV 284
|
170 180
....*....|....*....|....
gi 11024672 300 VLMGDAAHAIVPFFGQGMNAGFED 323
Cdd:PRK08850 285 ALVGDAAHTIHPLAGQGVNLGLLD 308
|
|
| PRK07608 |
PRK07608 |
UbiH/UbiF family hydroxylase; |
296-323 |
4.62e-05 |
|
UbiH/UbiF family hydroxylase;
Pssm-ID: 181057 [Multi-domain] Cd Length: 388 Bit Score: 45.72 E-value: 4.62e-05
10 20
....*....|....*....|....*...
gi 11024672 296 KSRCVLMGDAAHAIVPFFGQGMNAGFED 323
Cdd:PRK07608 279 APRVALVGDAAHLIHPLAGQGMNLGLRD 306
|
|
| PRK05714 |
PRK05714 |
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional |
301-356 |
2.07e-04 |
|
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Pssm-ID: 168201 [Multi-domain] Cd Length: 405 Bit Score: 43.66 E-value: 2.07e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 11024672 301 LMGDAAHAIVPFFGQGMNAGFEDCLVFDELMDKFNN------DLSVcLPEFSRFRIPDDHAI 356
Cdd:PRK05714 289 LIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAErgerlaDVRV-LSRFERRRMPHNLAL 349
|
|
| PRK08013 |
PRK08013 |
oxidoreductase; Provisional |
298-323 |
2.07e-04 |
|
oxidoreductase; Provisional
Pssm-ID: 236139 [Multi-domain] Cd Length: 400 Bit Score: 43.50 E-value: 2.07e-04
10 20
....*....|....*....|....*.
gi 11024672 298 RCVLMGDAAHAIVPFFGQGMNAGFED 323
Cdd:PRK08013 283 RLALVGDAAHTIHPLAGQGVNLGFMD 308
|
|
| PRK07333 |
PRK07333 |
ubiquinone biosynthesis hydroxylase; |
296-323 |
6.57e-04 |
|
ubiquinone biosynthesis hydroxylase;
Pssm-ID: 180935 [Multi-domain] Cd Length: 403 Bit Score: 41.89 E-value: 6.57e-04
10 20
....*....|....*....|....*...
gi 11024672 296 KSRCVLMGDAAHAIVPFFGQGMNAGFED 323
Cdd:PRK07333 279 APRFALVGDAAHGIHPIAGQGLNLGLKD 306
|
|
| PRK06475 |
PRK06475 |
FAD-binding protein; |
284-351 |
1.19e-03 |
|
FAD-binding protein;
Pssm-ID: 180582 [Multi-domain] Cd Length: 400 Bit Score: 40.96 E-value: 1.19e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 11024672 284 PMISVKCSPFHLKSRCVLMGDAAHAIVPFFGQGMNAGFEDCLVFDELMDkfNNDLSVCLPEFSRFRIP 351
Cdd:PRK06475 279 PLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALD--SDDQSAGLKRFDSVRKE 344
|
|
| ubiF |
PRK08020 |
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed |
300-332 |
2.00e-03 |
|
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Pssm-ID: 181199 [Multi-domain] Cd Length: 391 Bit Score: 40.35 E-value: 2.00e-03
10 20 30
....*....|....*....|....*....|...
gi 11024672 300 VLMGDAAHAIVPFFGQGMNAGFEDClvfDELMD 332
Cdd:PRK08020 284 ALVGDAAHTINPLAGQGVNLGYRDV---DALLD 313
|
|
|