|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
122-897 |
6.81e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 63.45 E-value: 6.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 122 KMREQLLKYQNEYNAVKEREFHNQYRLNSLKEEKIIIVKEFEKitKPGEMEKKMKILRESTEELRKEIMQKKLEiknlRE 201
Cdd:pfam02463 213 YQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIES--SKQEIEKEEEKLAQVLKENKEEEKEKKLQ----EE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 202 DLASKQKQLLKEQKELEELLGHQVVLKDEVAHHQTIPVQIGKEIEKITRKKVEMEKKKIVL-----------EQEVKTLN 270
Cdd:pfam02463 287 ELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELeikreaeeeeeEELEKLQE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 271 DSLKKVENKVSAIVDEKENVIKEVEGKRALLEIKEREHNQLVKLLELARENE--ATSLTERGILDLNLRNSLIDKQNYHD 348
Cdd:pfam02463 367 KLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEdlLKEEKKEELEILEEEEESIELKQGKL 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 349 ELSRKQREKERDFRNLRKMELLLKVSWDALRQTQALHQRLLLEMEAIPKDDSTLSERrrelhKEVEVAKRNLAQQKIISE 428
Cdd:pfam02463 447 TEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKES-----KARSGLKVLLALIKDGVG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 429 MESKLVEQQLAEENKLLKEQENMKELVVNLLRMTQIKIDEKEQKSKDFLKAQQKYTNIVKEMKAKDLEIRIHKKKKCEIY 508
Cdd:pfam02463 522 GRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDP 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 509 RRLREFAKLYDTIRNERNKFVNLLHKAHQKVNEIKER----------HKMSLNELEILRNSAVSQERKLQNSMLKHANNV 578
Cdd:pfam02463 602 ILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKesakakesglRKGVSLEEGLAEKSEVKASLSELTKELLEIQEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 579 TIRESMQNDVRKIVSKLQEMKEKKEAQLNNIDRLANTITMIEEEMVQLrKRYEKAVQHRNESGVQLIEREEEICIFYEKI 658
Cdd:pfam02463 682 QEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQE-AQDKINEELKLLKQKIDEEEEEEEKSRLKKE 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 659 NIQEKMKLNGEIEIHLLEEKIQFLKMKIAEKQRQICVTQKLLPAKRSLDADLAVLQIQFSQCTDRIKDLEKQFV---KPD 735
Cdd:pfam02463 761 EKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEEleeLAL 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 736 GENRARFLPGKDLTEKEMIQKLDKLELQLAKKEEKLLEKDFIyEQVSRLTDRLCSKTQGCKQDTLLLAKKMNGYQRRIKN 815
Cdd:pfam02463 841 ELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQ-KLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEI 919
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 816 A-TEKMMALVAELSMKQALTIELQKEVREKEDFIFTCNSRIEKGLPLNKEIEKEWLKVLRDEEMHALAIAEKSQEFLEAD 894
Cdd:pfam02463 920 EeRIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKER 999
|
...
gi 100814339 895 NRQ 897
Cdd:pfam02463 1000 LEE 1002
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
124-440 |
4.06e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 4.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 124 REQLLKYQnEYNAvKEREFHNQYRLNSLKEEKIIIVKEFEKITkpgEMEKKMKILRESTEELRKEIMQKKLEIKNLREDL 203
Cdd:COG1196 209 AEKAERYR-ELKE-ELKELEAELLLLKLRELEAELEELEAELE---ELEAELEELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 204 ASKQKQLLKEQKELEELLGhqvvlkdEVAHHQtipvqigKEIEKITRKKVEMEKKKIVLEQEVKTLNDSLKKVENKVSAI 283
Cdd:COG1196 284 EEAQAEEYELLAELARLEQ-------DIARLE-------ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 284 VDEKENVIKEVEGKRALLEIKEREHNQLVKLLELARENEATSLTERGILDLNLRNSLIDKQNYHDELSRKQREKERDFRN 363
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 100814339 364 LRKMELLLKVSWDALRQTQALHQRLLLEMEAIPKDDSTLSERRRELHKEVEVAKRNLAQQKIISEMESKLVEQQLAE 440
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
183-844 |
4.07e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 4.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 183 EELRKEIMQKKLEIKNLREDLASKQKQLLKEQKELEELLGHQVVLKDEVAHHQTIPVQIGKEIEKITRKKVEMEKKKIVL 262
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 263 EQEVKTLNDSLKKVENK-------VSAIVDEKENVIKEVEGKRALLEIKEREHNQLVKLLELARE-----NEATSLTERG 330
Cdd:TIGR02168 315 ERQLEELEAQLEELESKldelaeeLAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEqletlRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 331 ILDLNLRNSLIDKQNYHDELSRKQREKERDFRNLRKMELLLKVSWDALRQTQALHQRLLLEMEAIPKDDSTLSERRRELH 410
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 411 KEVEVAKRNLAQQKIISEMESKLVE--QQLAEENKLLKEQENMKELVVNLLrMTQIKIDEKEQKSK-------------- 474
Cdd:TIGR02168 475 QALDAAERELAQLQARLDSLERLQEnlEGFSEGVKALLKNQSGLSGILGVL-SELISVDEGYEAAIeaalggrlqavvve 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 475 ---------DFLK-AQQKYTNIVKEMKAKDLEIRIHKKKKCEIYRRLREFAKLYDTIRNERNKFVNLLHKAHQKVNEIKE 544
Cdd:TIGR02168 554 nlnaakkaiAFLKqNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDN 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 545 ----RHKMSLNEL------EILRNSAVS--QERKLQNSMLKH----ANNVTIRESMQNDVRKIVSKLQEMKEKKEAQLNN 608
Cdd:TIGR02168 634 alelAKKLRPGYRivtldgDLVRPGGVItgGSAKTNSSILERrreiEELEEKIEELEEKIAELEKALAELRKELEELEEE 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 609 IDRLANTITMIEEEMVQLRKRYEKAVQHRNESGVQLIEREEEICIFYEKINIQEKMKLNGEIEIHLLEEKIQFLKMKIAE 688
Cdd:TIGR02168 714 LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 689 KQRQIcvtQKLLPAKRSLDADLAVLQIQFSQCTDRIKDLEKQFVKPDGENRARFLPGKDLTEK--EMIQKLDKLELQLAK 766
Cdd:TIGR02168 794 LKEEL---KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDieSLAAEIEELEELIEE 870
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 100814339 767 KEEKLLEKDFIYEQVSRLTDRLCSKTQGCKQDTLLLAKKMNGYQRRIKNATEKMMALVAELSMKQALTIELQKEVREK 844
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
124-774 |
1.86e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 1.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 124 REQLLKYQNEYNAVKEREFHNQYRLNSLKEEKIIIVKEFekitkpGEMEKKMKILRESTEELRKEIMQKKLEIKNLREDL 203
Cdd:TIGR02168 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEV------SELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 204 ASKQKQLLKEQKELEELLGHQVVLKDEVAHHQTIPVQIGKEIEKITRKKVEMEKKKIVLEQEVKTLNDSLKKVENKVSAI 283
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 284 VDEKENVIKEVEGKRALLEIKEREHNQLV--------KLLELARENEATSLTERGILDLNLRNSLIDKQNYHDELSRKQR 355
Cdd:TIGR02168 392 ELQIASLNNEIERLEARLERLEDRRERLQqeieellkKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 356 EKERDFRNLRKMELLLKVSWDALRQTQALHQ-------RLLLEMEAIPKDDSTLSER---RRELHKEVEVAKRNLAQQKI 425
Cdd:TIGR02168 472 EAEQALDAAERELAQLQARLDSLERLQENLEgfsegvkALLKNQSGLSGILGVLSELisvDEGYEAAIEAALGGRLQAVV 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 426 ISEMESKLVEQQLAEENKLLK------EQENMKELVVNLLRMTQ------------IKIDEKEQKSKDFL---------- 477
Cdd:TIGR02168 552 VENLNAAKKAIAFLKQNELGRvtflplDSIKGTEIQGNDREILKniegflgvakdlVKFDPKLRKALSYLlggvlvvddl 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 478 --------KAQQKYTNIVKE--------------------MKAKDLEIRIHKKKKCEIYRRLREFAKLYDTIRNERNKFV 529
Cdd:TIGR02168 632 dnalelakKLRPGYRIVTLDgdlvrpggvitggsaktnssILERRREIEELEEKIEELEEKIAELEKALAELRKELEELE 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 530 NLLHKAHQKVNEIKERHKMSLNELEILRNSAVSQERKLQNSMLKHANNVTIRESMQNDVRKIVSKLQEMKEKKEAQLNNI 609
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 610 DRLANTITMIEEEMVQLRKRY--EKAVQHRNESGVQLIEREEEICIFYEKINIQEKMKLNGEIEIhlLEEKIQFLKMKIA 687
Cdd:TIGR02168 792 EQLKEELKALREALDELRAELtlLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES--LAAEIEELEELIE 869
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 688 EKQRQIcvtQKLLPAKRSLDADLAVLQIQFSQCTDRIKDLEKQFVKPDGENRArflpgKDLTEKEMIQKLDKLELQLAKK 767
Cdd:TIGR02168 870 ELESEL---EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE-----LREKLAQLELRLEGLEVRIDNL 941
|
....*..
gi 100814339 768 EEKLLEK 774
Cdd:TIGR02168 942 QERLSEE 948
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
82-667 |
3.37e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 3.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 82 QESEVQLLQNAKRFTEQIQQQQFHLQQADNFPEAFSTEVSKMREQLLKYQNEYNAVKEREFHNQYRLNSLKeekiiivKE 161
Cdd:PTZ00121 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAK-------KK 1310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 162 FEKITKPGEMEKKMKILRESTEELRK--EIMQKKLEIKNLREDLASKQKQLLKEQKELEELLGHQVVLKDEVAHHQTIPV 239
Cdd:PTZ00121 1311 AEEAKKADEAKKKAEEAKKKADAAKKkaEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK 1390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 240 QIGKEIEKITR---------KKVEMEKKKI----VLEQEVKTLNDSLKKVENKVSAIVDEK--------ENVIKEVEGKR 298
Cdd:PTZ00121 1391 KKADEAKKKAEedkkkadelKKAAAAKKKAdeakKKAEEKKKADEAKKKAEEAKKADEAKKkaeeakkaEEAKKKAEEAK 1470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 299 ALLEIKE-----REHNQLVKLLELARE--NEATSLTERGILDLNLRNSliDKQNYHDELsrKQREKERDFRNLRKMELLL 371
Cdd:PTZ00121 1471 KADEAKKkaeeaKKADEAKKKAEEAKKkaDEAKKAAEAKKKADEAKKA--EEAKKADEA--KKAEEAKKADEAKKAEEKK 1546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 372 KVswDALRQTQAL---HQRLLLEMEAIPKDDSTLSERRRELHKEVEVAKRNLAQQKIISEMESKLVEQQLAEENKLLKEQ 448
Cdd:PTZ00121 1547 KA--DELKKAEELkkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE 1624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 449 ENMKELVVNLLRMTQIKIDEKEQKSKDFLKAQQKYTNIVKEMKAKDLEirihKKKKCEIYRRLREfaklydtirNERNKF 528
Cdd:PTZ00121 1625 LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE----DKKKAEEAKKAEE---------DEKKAA 1691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 529 VNLLHKAHQ--KVNEIKERHKMSLNELEILRNSavSQERKLQNSMLKhannvtiRESMQNDVRKIVSKLQEMKEKKEAQL 606
Cdd:PTZ00121 1692 EALKKEAEEakKAEELKKKEAEEKKKAEELKKA--EEENKIKAEEAK-------KEAEEDKKKAEEAKKDEEEKKKIAHL 1762
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 100814339 607 NNIDRLANTITMIEEEMVqlrkrYEKAVQHRNESGVQLIEREEEIcIFYEKINIQEKMKLN 667
Cdd:PTZ00121 1763 KKEEEKKAEEIRKEKEAV-----IEEELDEEDEKRRMEVDKKIKD-IFDNFANIIEGGKEG 1817
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
169-492 |
4.33e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 4.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 169 GEMEKKMKILRESTEelrkeimqKKLEIKNLREDLASKQKQLLK-----EQKELEELLGHQVVLKDEVAHHQTIPVQIGK 243
Cdd:TIGR02168 196 NELERQLKSLERQAE--------KAERYKELKAELRELELALLVlrleeLREELEELQEELKEAEEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 244 EIEKITRKKVEMEKKKIVLEQEVKTLNDSLKKVENKVSAIVDEKENVIKEVEGKRALLEIKEREHNQLVKLLELARENEA 323
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 324 TSLTERgildLNLRNSLIDKQNYHDELSRKQREKERDFRNLRKMElllkvswDALRQTQALHQRLLLEMEAIPKDdstLS 403
Cdd:TIGR02168 348 ELKEEL----ESLEAELEELEAELEELESRLEELEEQLETLRSKV-------AQLELQIASLNNEIERLEARLER---LE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 404 ERRRELHKEVEvakrnlAQQKIISEMESKLVEQQLAEENKLLKEQENMKELVVNLLRMTQIKIDEKEQKSKDFLKAQQKY 483
Cdd:TIGR02168 414 DRRERLQQEIE------ELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
....*....
gi 100814339 484 TNIVKEMKA 492
Cdd:TIGR02168 488 QARLDSLER 496
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
118-409 |
8.76e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 8.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 118 TEVSKMREQLLKYQNEYNAVKEREF--------------HNQYRLNSLKEEKIIIVKEFEKItkpgemEKKMKILRESTE 183
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYellaelarleqdiaRLEERRRELEERLEELEEELAEL------EEELEELEEELE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 184 ELRKEIMQKKLEIKNLREDLASKQKQLLKEQKELEELLGHQVVLKDEVAHHQTIPVQIGKEIEKITRKKVEMEKKKIVLE 263
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 264 QEVKTLNDSLKKVENKVSAIVDEKENVIKEVEGKRALLEIKEREHNQLVKLLELARENEATSLTERGILDLNLRNSLIDK 343
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 100814339 344 QNYHDELSRKQREKERDFRNLRKMELLLKVSWDALRQTQALHQRLLLEMEAIPKDDSTLSERRREL 409
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYL 566
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
404-797 |
1.53e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 404 ERRRELHKEVEVAKRNLAQ-QKIISEMESKLV----EQQLAEENKLLKEQENMKELVVNLLRMTQiKIDEKEQKSKDFLK 478
Cdd:TIGR02168 172 ERRKETERKLERTRENLDRlEDILNELERQLKslerQAEKAERYKELKAELRELELALLVLRLEE-LREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 479 AQQKYTNIVKEMKAKDLEIRIHKKKKceiyrrlrefaklydtirnernkfvnllHKAHQKVNEIKERhkmsLNELEILRN 558
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEV----------------------------SELEEEIEELQKE----LYALANEIS 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 559 SAVSQERKLQNSMlkhANNVTIRESMQNDVRKIVSKLQEMKEKKEAQLNNIDRLANTITMIEEEMVQLRKRYEKAVQHRN 638
Cdd:TIGR02168 299 RLEQQKQILRERL---ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 639 EsgvqliereeeicifyekiniqekmklngeieihlLEEKIQFLKMKIAEKQRQICVTQKLLpakRSLDADLAVLQIQFS 718
Cdd:TIGR02168 376 E-----------------------------------LEEQLETLRSKVAQLELQIASLNNEI---ERLEARLERLEDRRE 417
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 100814339 719 QCTDRIKDLEKQFVKPDGENRARFLPGKDLTEKEMIQKLDKLELQLAKKEEKLLEKDFIYEQVSRLTDRLCSKTQGCKQ 797
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
243-544 |
1.99e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 243 KEIEKITRKKVEMEKKKIVLEQEVKTLNDSLKKVENKVSAIVDEKENVIKEVEGKRALLEIKEREHNQLVKLLELARENE 322
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 323 ATSLTERGILDLNLRNSLIDKQNYHDELSRKQREKERDFRNLRKMELLLKVSWDALRQTQALHQRLLLEMEAIPKDDSTL 402
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 403 SERRRELHKEVEVAKRNLAqqKIISEMES--KLVEQQLAEENKLLKEQENMKELVVNLLRMTQIKIDEKEQKSKDFLKAQ 480
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIE--SLAAEIEEleELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 100814339 481 QKYTNIVKEMKAKDLEIRIHKKKKCEIYRRLREFAKL-YDTIRNERNKFVNLLHKAHQKVNEIKE 544
Cdd:TIGR02168 915 RELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLtLEEAEALENKIEDDEEEARRRLKRLEN 979
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
114-603 |
2.65e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 2.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 114 EAFSTEVSKMREQLLKYQNEYNAVKEREFHNQYRLNSLKEEKIIIVKEFEKITKPGEMEKKMKILRESTEELRKEIMQKK 193
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 194 LEIKNLREDLASKQKQLLK---EQKELEELLGHQVVLKDEVAHHQTipvqIGKEIEKITRKKVEMEK-KKIVLEQEVKTL 269
Cdd:PRK03918 314 KRLSRLEEEINGIEERIKEleeKEERLEELKKKLKELEKRLEELEE----RHELYEEAKAKKEELERlKKRLTGLTPEKL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 270 NDSLKKVENKVSAIVDEkenvIKEVEGKRALLEIKEREHNQLVKLLELAR-----------ENEATSLTERGILDLnlrN 338
Cdd:PRK03918 390 EKELEELEKAKEEIEEE----ISKITARIGELKKEIKELKKAIEELKKAKgkcpvcgreltEEHRKELLEEYTAEL---K 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 339 SLIDKQNYHDELSRKQREKERDFRNLRKMELLLKVSWDALRQTQALHQRL----LLEMEAIPKDDSTLSERRRELHKEVE 414
Cdd:PRK03918 463 RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLkkynLEELEKKAEEYEKLKEKLIKLKGEIK 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 415 VAKRNLaqqKIISEMESKLVEQqlaeENKLLKEQENMKELVVNLLRMTQIKIDEKEQKSKDFLKAQQKYTNIvkemkakd 494
Cdd:PRK03918 543 SLKKEL---EKLEELKKKLAEL----EKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLEL-------- 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 495 leirihKKKKCEIYRRLREFAKLYDTIRNERNKFVNLLHKAHQKVNEIKE-RHKMSLNELEILRNSAVSQERKLQNSMLK 573
Cdd:PRK03918 608 ------KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEElEKKYSEEEYEELREEYLELSRELAGLRAE 681
|
490 500 510
....*....|....*....|....*....|
gi 100814339 574 HANNVTIRESMQNDVRKIVSKLQEMKEKKE 603
Cdd:PRK03918 682 LEELEKRREEIKKTLEKLKEELEEREKAKK 711
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
115-733 |
1.12e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 115 AFSTEVSKMREQLlkyQNEYNAVKEREFHNQYRLNSLKEEKiiivkefekitkpgemEKKMKIL-RESTEELRKEIMQKK 193
Cdd:pfam15921 217 SLGSAISKILREL---DTEISYLKGRIFPVEDQLEALKSES----------------QNKIELLlQQHQDRIEQLISEHE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 194 LEIKNLREDLASKQKQLLKEQKELEellghqvVLKDEVAHHQTIPVQIGKEIEK-ITRKKVEMEKKKIVLEQEVKTLNDS 272
Cdd:pfam15921 278 VEITGLTEKASSARSQANSIQSQLE-------IIQEQARNQNSMYMRQLSDLEStVSQLRSELREAKRMYEDKIEELEKQ 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 273 LKKVENKVSAIVDEKENVIKEV-----EGKRALLEIKEREHnqlvkllELARENEATSL-----TERGILDLNLRNSLID 342
Cdd:pfam15921 351 LVLANSELTEARTERDQFSQESgnlddQLQKLLADLHKREK-------ELSLEKEQNKRlwdrdTGNSITIDHLRRELDD 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 343 KQNYHDEL--------SRKQREKERDFRNLR-KMELLLKVS--WDALRQTQALHQRLLLEMEA----IPKDDSTLSERRR 407
Cdd:pfam15921 424 RNMEVQRLeallkamkSECQGQMERQMAAIQgKNESLEKVSslTAQLESTKEMLRKVVEELTAkkmtLESSERTVSDLTA 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 408 ELH-KEVEVAKRNLAQQKIISEMESKLVE-----------QQLAEENKLLKEQENMKELVVNLLR-----MTQIKidekE 470
Cdd:pfam15921 504 SLQeKERAIEATNAEITKLRSRVDLKLQElqhlknegdhlRNVQTECEALKLQMAEKDKVIEILRqqienMTQLV----G 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 471 QKSKDFLKAQQKYTNIVKEMKAKDLEIRIHKKKKCEIYRRLREFAKLYDTIRNERNKFVNLLHKAHQKVNEIKERHKMSL 550
Cdd:pfam15921 580 QHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLL 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 551 NELEILRN--SAVSQERKLQNSMLKHANnvtirESMQNDVRKIVSKLQEMKEKKEAQLNNIDRLANTITMIEEEMVQLRK 628
Cdd:pfam15921 660 NEVKTSRNelNSLSEDYEVLKRNFRNKS-----EEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQK 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 629 ryekavqhrnesgvQLIEREEEICIFYEKINIQEKMKLNGEIEIHLLEEKIQFLKMKIA----EKQRQICVTQKLLPAKR 704
Cdd:pfam15921 735 --------------QITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELStvatEKNKMAGELEVLRSQER 800
|
650 660 670
....*....|....*....|....*....|....*.
gi 100814339 705 SLDADLAVLQI-------QFSQCTDRIKDLEKQFVK 733
Cdd:pfam15921 801 RLKEKVANMEValdkaslQFAECQDIIQRQEQESVR 836
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
62-730 |
1.41e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 62 TRMAALKAKYTLLHDAVMSTQESEVQLLQNAKRFTEQIQQQQFHLQQADNFPEAFSTEVSKMREQLLKYQNEYNAVKERE 141
Cdd:TIGR02168 260 AELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 142 FHNQYRLNSLKEEKIIIVKEF-EKITKPGEMEKKMKILRESTEELRKEIMQKKLEIKNLR----------EDLASKQKQL 210
Cdd:TIGR02168 340 AELEEKLEELKEELESLEAELeELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNneierlearlERLEDRRERL 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 211 LKEQKELEELLGHQVV--LKDEVAHHQTIPVQIGKEIEKITRKKVEMEKKKIVLEQEVKTLNDSLKKVENKVSAIVDEKE 288
Cdd:TIGR02168 420 QQEIEELLKKLEEAELkeLQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 289 NVIKEVEGKRALLEIKER---EHNQLVKLLELARENE-ATSLTERGILDLNLRNSL--------IDKQN----------- 345
Cdd:TIGR02168 500 NLEGFSEGVKALLKNQSGlsgILGVLSELISVDEGYEaAIEAALGGRLQAVVVENLnaakkaiaFLKQNelgrvtflpld 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 346 -----YHDELSRKQREKERDFR----NLRKMELLLKVSWDAL--------RQTQALHQR--LLLEMEAIPKDDSTLSERR 406
Cdd:TIGR02168 580 sikgtEIQGNDREILKNIEGFLgvakDLVKFDPKLRKALSYLlggvlvvdDLDNALELAkkLRPGYRIVTLDGDLVRPGG 659
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 407 RELHKEVEVAKRNLAQQKIISEMESKlVEQQLAEENKLLKEQENMKELVVNLLrmtqikiDEKEQKSKDFLKAQQKYTNI 486
Cdd:TIGR02168 660 VITGGSAKTNSSILERRREIEELEEK-IEELEEKIAELEKALAELRKELEELE-------EELEQLRKELEELSRQISAL 731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 487 VKEMKAKDLEIRIHKKKKCEIYRRLREFAKLYDTIRNERNKFVNLLHKAHQKVNEIKERHKMSLNELEILRNSAVSQERK 566
Cdd:TIGR02168 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 567 LQNSMLKHANNVTIRESMQNDVRKIVSKLQEMKEKKEAQLNNIDRLANTITMIEEEMVQLRKRYEKAVQHRNESGVQLIE 646
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 647 REEEICIFYEKINIQEKMKLNGEIEIHLLEEKIQFLKMKIAEKQRQICVTQKLLPAKRSLDADLAV-----LQIQFSQCT 721
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEalenkIEDDEEEAR 971
|
....*....
gi 100814339 722 DRIKDLEKQ 730
Cdd:TIGR02168 972 RRLKRLENK 980
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
126-323 |
1.49e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 1.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 126 QLLKYQNEYNAVKEREFHNQYRLNSLKEEKIIIVKEFEKItkpgemEKKMKILRESTEELRKEIMQKKLEIKNLREDLA- 204
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNEL------QAELEALQAEIDKLQAEIAEAEAEIEERREELGe 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 205 ---SKQKQ--------LLKEQKELEELLGHQVVLKDEVAHHQTIPVQIGKEIEKITRKKVEMEKKKIVLEQEVKTLNDSL 273
Cdd:COG3883 91 rarALYRSggsvsyldVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 100814339 274 KKVENKVSaivdEKENVIKEVEGKRALLEIKEREHNQLVKLLELARENEA 323
Cdd:COG3883 171 AELEAQQA----EQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
119-773 |
2.62e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 119 EVSKMREQLLKYQNEYNAVKEREFHNQYRLNSLKEEKIIIVKEfekitKPGEMEKKMKILRESTEELRKEIMQKKLEIKN 198
Cdd:TIGR02169 252 ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE-----KIGELEAEIASLERSIAEKERELEDAEERLAK 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 199 LREDLASKQKQLLKEQKELEELLGHQVVLKDEVAHHQTIPVQIGKEIEKITRKKVEMEKKKIVLEQEVKTLNDSLKKVEN 278
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 279 KVSAIVDEKENVIKEVEGKRALLEIKEREHNQLVKLLELAREN--EATSLTERGILDL-NLRNSLIDKQNYHDELSRKQR 355
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEikKQEWKLEQLAADLsKYEQELYDLKEEYDRVEKELS 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 356 EKERDfrnLRKMELLLKVSWDALRQTQALHQRLLLEMEAIPKDDSTLSERRRELHKEVEVAKRNLAQQKIIsemESKLVE 435
Cdd:TIGR02169 487 KLQRE---LAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVV---EDDAVA 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 436 QQLAEenkLLKEqenmkelvVNLLRMTQIKIDEKEQKSK---------------DFLKAQQKYTNIVKEM---------- 490
Cdd:TIGR02169 561 KEAIE---LLKR--------RKAGRATFLPLNKMRDERRdlsilsedgvigfavDLVEFDPKYEPAFKYVfgdtlvvedi 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 491 -KAKDLEIRIH--------------------------------KKKKCEIYRRLREFAKLYDTIRNERNKFVNLLHKAHQ 537
Cdd:TIGR02169 630 eAARRLMGKYRmvtlegelfeksgamtggsraprggilfsrsePAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQ 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 538 KVNEIKERHKMSLNELEILRNSAVSQERKLQNSMlkhannvtiresmqndvrkivSKLQEMKEKKEAQLNNIDRLANTIT 617
Cdd:TIGR02169 710 ELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE---------------------EDLSSLEQEIENVKSELKELEARIE 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 618 MIEEEMVQLRKRYEKAVQHRNESGVQLIERE----EEICIFYEKINIQEKMKLNG-EIEIHLLEEKIQFLKMKIAEKQRQ 692
Cdd:TIGR02169 769 ELEEDLHKLEEALNDLEARLSHSRIPEIQAElsklEEEVSRIEARLREIEQKLNRlTLEKEYLEKEIQELQEQRIDLKEQ 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 693 I---CVTQKLLPA-KRSLDADLAVLQIQFSQCTDRIKDLEKQFVKPDGENRarflpgkdltekEMIQKLDKLELQLAKKE 768
Cdd:TIGR02169 849 IksiEKEIENLNGkKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR------------ELERKIEELEAQIEKKR 916
|
....*
gi 100814339 769 EKLLE 773
Cdd:TIGR02169 917 KRLSE 921
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
286-606 |
2.64e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 286 EKENVIKEVEGKRALLEIKEREHNQLVKLLELARENEATSLtERgildlnlrnslidkqnyHDELSR-KQREKERDFRNL 364
Cdd:pfam17380 304 EKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAM-ER-----------------ERELERiRQEERKRELERI 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 365 RKMELLLKVSwdALRQTQAL-------HQRLLLEMEAIPKDDSTLSERRRELHKEVEVAKRNLAQQKIISEMESKLVEQQ 437
Cdd:pfam17380 366 RQEEIAMEIS--RMRELERLqmerqqkNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEE 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 438 LAEENKLLKEQENMKELVVNLLRMTQikidEKEQKSKDFLKAQQKYTNIVKEMKAKDLEIRIHKKKKCEIyrrlrefakl 517
Cdd:pfam17380 444 RAREMERVRLEEQERQQQVERLRQQE----EERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMI---------- 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 518 ydtirNERNKFVNLLHKAHQKVNEIKERHKMSLNELEILRNSAVSQERKLQNSMLKHANNVTIRESMQNDvRKIVSKLQE 597
Cdd:pfam17380 510 -----EEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERE-REMMRQIVE 583
|
....*....
gi 100814339 598 mKEKKEAQL 606
Cdd:pfam17380 584 -SEKARAEY 591
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
244-497 |
2.95e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 2.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 244 EIEKITRKKVEMEKKKIVLEQEVKTLNDSLKKVENKVSAIVDEKENVIKEVEGKRALLEIKEREHNQLVKLLELARENEA 323
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 324 TSLTERGILDLNLRNSLIDKQNYHDELSRKQREKERDFRNLRKMELLLKVSWDALRQTQALHQRLLLEMEAIPKDDSTLS 403
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 404 ERRRELHKEVEVAKRNLAQQKIISEMESKLVEQQLAEENKLLKEQENMKELVVNLLRMTQIKIDEKEQKSKDFLKAQQKY 483
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
250
....*....|....
gi 100814339 484 TNIVKEMKAKDLEI 497
Cdd:COG1196 473 ALLEAALAELLEEL 486
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
178-788 |
3.00e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 178 LRESTEELRKEIMQKKLEIKNLREDLASKQKQLLKEQKELEELLGHQVVLKDEVAHHQtipvqigKEIEKITRKKVEMEK 257
Cdd:TIGR02169 334 LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR-------EKLEKLKREINELKR 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 258 KKIVLEQEVKTLNDSLKKVENKVSAIVDEKENVIKEVEGKRALLEIKEREHNQLVKLLELAREneatsltergildlnlr 337
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ----------------- 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 338 nSLIDKQNYHDELSRKQREKERDfrnLRKMELLLKVSWDALRQTQALHQRLLLEMEAIPKDDSTLSERRRELHKEVEVAK 417
Cdd:TIGR02169 470 -ELYDLKEEYDRVEKELSKLQRE---LAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAA 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 418 RNLAQQKIIsemESKLVEQQLAEenkLLKEqenmkelvVNLLRMTQIKIDEKEQKSK---------------DFLKAQQK 482
Cdd:TIGR02169 546 GNRLNNVVV---EDDAVAKEAIE---LLKR--------RKAGRATFLPLNKMRDERRdlsilsedgvigfavDLVEFDPK 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 483 YTNIVKEM-----------KAKDLEIRIH--------------------------------KKKKCEIYRRLREFAKLYD 519
Cdd:TIGR02169 612 YEPAFKYVfgdtlvvedieAARRLMGKYRmvtlegelfeksgamtggsraprggilfsrsePAELQRLRERLEGLKRELS 691
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 520 TIRNERNKFVNLLHKAHQKVNEIKERHKMSLNELEILRNSAVSQERKLQNSMLKHA---NNVTIRESMQNDVRKIVSKLQ 596
Cdd:TIGR02169 692 SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSsleQEIENVKSELKELEARIEELE 771
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 597 EMKEKKEAQLNNIDR---------LANTITMIEEEMVQLRKRYEKAVQHRNESGVQLIEREEEICIFYEKINIQEKMKLN 667
Cdd:TIGR02169 772 EDLHKLEEALNDLEArlshsripeIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS 851
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 668 GEIEIHLLEEKIQFLKMKIAEKQRQIcvtQKLLPAKRSLDADLAVLQIQFSQCTDRIKDLEKQFVKPdgENRARFLPGKD 747
Cdd:TIGR02169 852 IEKEIENLNGKKEELEEELEELEAAL---RDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK--RKRLSELKAKL 926
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 100814339 748 LTEKEMIQKLDKLELQLAKKEEKLLEKDFIYEQVSRLTDRL 788
Cdd:TIGR02169 927 EALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEI 967
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
298-568 |
6.44e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 6.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 298 RALLEIKEREHNQLVKLLELARENEATSLTERGILD---------LNLRNSLIDKQNYHDELSRKQREKERdfrnlrkme 368
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQerrealqrlAEYSWDEIDVASAEREIAELEAELER--------- 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 369 llLKVSWDALRQTQALHQRLLLEMEAIPKDDSTLSERRRELHKEVEVAKRNLAQQK----IISEMESKLVEQQLAEENKL 444
Cdd:COG4913 680 --LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQdrleAAEDLARLELRALLEERFAA 757
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 445 LKEQENMKELVVNLLRMTQIKIDEKEQKSKDFLKAQQKYtNIVKEMKAKDLEIRIhkkkkceiyRRLREFAKLYDTIRNE 524
Cdd:COG4913 758 ALGDAVERELRENLEERIDALRARLNRAEEELERAMRAF-NREWPAETADLDADL---------ESLPEYLALLDRLEED 827
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 100814339 525 R-----------------NKFVNLLHKAHQKVNEIKERhkmsLNEL-EILRNSAVSQERKLQ 568
Cdd:COG4913 828 GlpeyeerfkellnensiEFVADLLSKLRRAIREIKER----IDPLnDSLKRIPFGPGRYLR 885
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
256-830 |
6.46e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 6.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 256 EKKKIVLEQEVKTLNDSLKKVENKVSAIVD--------------EKENVIKEVEGKRALLE-IKEREHNQLVKLLELARE 320
Cdd:pfam15921 102 EKQKFYLRQSVIDLQTKLQEMQMERDAMADirrresqsqedlrnQLQNTVHELEAAKCLKEdMLEDSNTQIEQLRKMMLS 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 321 NEATSLTERGILdLNLRNSLIDKQNYHDELS------------RKQREKERDFRNLR-------------------KMEL 369
Cdd:pfam15921 182 HEGVLQEIRSIL-VDFEEASGKKIYEHDSMStmhfrslgsaisKILRELDTEISYLKgrifpvedqlealksesqnKIEL 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 370 LLKVSWDALRQTQALHQrllLEMEAIPKDDSTLSERRRELHKEVEVAKRNLAQQK------------IISEMESKLVEQQ 437
Cdd:pfam15921 261 LLQQHQDRIEQLISEHE---VEITGLTEKASSARSQANSIQSQLEIIQEQARNQNsmymrqlsdlesTVSQLRSELREAK 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 438 LAEENKLlkeQENMKELVVNLLRMTQIKIdEKEQKSKDFLKAQQKYTNIVKEMKAKDLEIRIHKKKKCEIYRRLREFAKL 517
Cdd:pfam15921 338 RMYEDKI---EELEKQLVLANSELTEART-ERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSIT 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 518 YDTIRNErnkfvnlLHKAHQKVNEIKERHKMSLNELE--ILRNSAVSQERklqNSMLKHANNVTIR-ESMQNDVRKIVSK 594
Cdd:pfam15921 414 IDHLRRE-------LDDRNMEVQRLEALLKAMKSECQgqMERQMAAIQGK---NESLEKVSSLTAQlESTKEMLRKVVEE 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 595 LQemkeKKEAQLNNIDRLANTITMIEEEMvqlrkryEKAVQHRNESGVQLIEREEeicifyekINIQEKMKLNGEIEiHL 674
Cdd:pfam15921 484 LT----AKKMTLESSERTVSDLTASLQEK-------ERAIEATNAEITKLRSRVD--------LKLQELQHLKNEGD-HL 543
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 675 --LEEKIQFLKMKIAEKQRQICVTQKLLPAKRSLDAD----LAVLQIQFSQCTDRIKD--LEKQFVKPDGENrarflpgK 746
Cdd:pfam15921 544 rnVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQhgrtAGAMQVEKAQLEKEINDrrLELQEFKILKDK-------K 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 747 DLTEKEMIQKLDKLELQLAKKEEKLLEKDFIYEQVSRLTDRLCSKTQGCKQDTLLLAKKMNGYQRRIKNATEKMMALVAE 826
Cdd:pfam15921 617 DAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNK 696
|
....
gi 100814339 827 LSMK 830
Cdd:pfam15921 697 LKMQ 700
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
114-310 |
7.53e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 7.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 114 EAFSTEVSKMREqLLKYQneynavKEREFHNQYRLNSLKEEKIIIVKEFEKITKPGEMEKKMKILRESTEELRKEIMQ-- 191
Cdd:pfam17380 368 EEIAMEISRMRE-LERLQ------MERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRrl 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 192 ---KKLEIKNLREDLASKQKQLLKEQKELEELLGHQVVLKDEVAHHQTIPVQ----IGKEIEKITRKKVEMEKKKIVLEQ 264
Cdd:pfam17380 441 eeeRAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQrrkiLEKELEERKQAMIEEERKRKLLEK 520
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 100814339 265 EvktlndslkkVENKVSAIVDEKENVIKEvEGKRALLEIKEREHNQ 310
Cdd:pfam17380 521 E----------MEERQKAIYEEERRREAE-EERRKQQEMEERRRIQ 555
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
154-874 |
9.55e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 9.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 154 EKIIIVKEFEKITKPGEMEKKMKILRESTEELRKEIMQKKLEIKNLREDLASKQKQLLKEQKELEELLGHQVVLKDEVAH 233
Cdd:PTZ00121 1085 EDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDAR 1164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 234 HQTIP--VQIGKEIEKiTRKKVEMEKKKIVLEQEVKTLNDSLKKVENKVSAIVDEKENVIKEVEGKRALLEIKEREHNql 311
Cdd:PTZ00121 1165 KAEEArkAEDAKKAEA-ARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEE-- 1241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 312 VKLLELARENEATSLTERGILDLNLRNSLIDK---QNYHDELsrKQREKERDFRNLRKMELLLKVSWDALRQTQALH-QR 387
Cdd:PTZ00121 1242 AKKAEEERNNEEIRKFEEARMAHFARRQAAIKaeeARKADEL--KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKaDE 1319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 388 LLLEMEAIPKDDSTLSERRRELHKEVEVAKRNLAQQKIISEMESKLVEQQLAEENKLLKEQENMKELVVNLLRMTQIKID 467
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 468 EKEQKSK-DFLKAQQKYTNIVKEMKAKDLEIRIHK--KKKCEIYRRLREFAKLYDtirnERNKFVNLLHKAHQ--KVNEI 542
Cdd:PTZ00121 1400 AEEDKKKaDELKKAAAAKKKADEAKKKAEEKKKADeaKKKAEEAKKADEAKKKAE----EAKKAEEAKKKAEEakKADEA 1475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 543 KERHKMSlNELEILRNSAVSQERKLQNSMLKHANNVTIRESMQNDVRKIVSKLQEMKEKKEA-QLNNIDRLANTITMIEE 621
Cdd:PTZ00121 1476 KKKAEEA-KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAdEAKKAEEKKKADELKKA 1554
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 622 EMVQLRKRYEKAVQ-HRNESGVQLIEREEEICIFYEKINIQEKMKLNGEieihllEEKIQFLKMKIAEKQRqicvtQKLL 700
Cdd:PTZ00121 1555 EELKKAEEKKKAEEaKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE------EKKMKAEEAKKAEEAK-----IKAE 1623
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 701 PAKRSLDADLAVLQIQFSQCTDRIKDLEKQFVKPDGENRARFLPGKDLTEKEMIQKLDKLELQLAKKEEKLL---EKDFI 777
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeaEEAKK 1703
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 778 YEQVSRLTDRLCSKTQGCKQDTLLLAKKMNGYQRRIKNATEKMMALVAELSMKQALTIELQKEVREKEDFIFTCNSRIEK 857
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
730
....*....|....*..
gi 100814339 858 GlpLNKEIEKEWLKVLR 874
Cdd:PTZ00121 1784 E--LDEEDEKRRMEVDK 1798
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
159-510 |
9.66e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 9.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 159 VKEFEKITKPGEMEKKMKILRESteeLRKEIMQKKLEIKNLREDLASKQKQLLKEQKELEELLGHQVVLKDEVAHHQTIP 238
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSS---LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 239 VQIGKEIEKITRKKVEMEKKKIVLEQEVKTLNDSLKKVE-----NKVSAIVDEKENVIKEVEGKRALLEIKEREHNQLVK 313
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEarlshSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 314 LLELARENEATSLTERGILDLNlRNSLIDKQnyhDELSRKQREKERDFRNLRKMELLLKVSWDALRQTQALHQRLLLEME 393
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQ-IKSIEKEI---ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 394 AIPKDDSTLSERRRELHKEVEVAKRNLAQQKIISEMESKLVEQQLAEENKLLKEQENMKELVVNLLRMTQIK---IDEKE 470
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNmlaIQEYE 982
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 100814339 471 QKSKDFLKAQQKYTNIVKEMKAKDLEIRIHKKKKCEIYRR 510
Cdd:TIGR02169 983 EVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFME 1022
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
120-568 |
1.39e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 120 VSKMREQLLKYQNEYNAVKEREFHNQYRLNSLKEEKIIIVKEFEKIT----KPGEMEKKMKILRESTEELRKEIMQKKLE 195
Cdd:PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEelekELESLEGSKRKLEEKIRELEERIEELKKE 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 196 IKNLREdlasKQKQLLKEQKELEELLghqvvlkdevahhqtipvQIGKEIEKITRKKVEMEKKKIVLEQEVKTLNDSLKK 275
Cdd:PRK03918 275 IEELEE----KVKELKELKEKAEEYI------------------KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 276 VENKVSAIvDEKENVIKEVEGKRALLEIKEREHNQLVKLLELARENEAtSLTERGILDLNLRNSLIDKQNyhDELSRKQR 355
Cdd:PRK03918 333 LEEKEERL-EELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKK-RLTGLTPEKLEKELEELEKAK--EEIEEEIS 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 356 EKERDFRNLRKMELLLKVSWDALRQTQA----------------LHQRLLLEMEAIPKDDSTLSERRRELHKE-VEVAKR 418
Cdd:PRK03918 409 KITARIGELKKEIKELKKAIEELKKAKGkcpvcgrelteehrkeLLEEYTAELKRIEKELKEIEEKERKLRKElRELEKV 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 419 NLAQQKIIS---------EMESKLVEQQLAEENKLLKEQENMKELVVNLlrMTQIKIDEKEQKSKDFLKaqqkytnivKE 489
Cdd:PRK03918 489 LKKESELIKlkelaeqlkELEEKLKKYNLEELEKKAEEYEKLKEKLIKL--KGEIKSLKKELEKLEELK---------KK 557
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 100814339 490 MKAKDLEIRIHKKKKCEIYRRLREFAKLYDTIRNERNKFVNLLHKAHQKVNEIKERHKMSLNELEILRNSAVSQERKLQ 568
Cdd:PRK03918 558 LAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELA 636
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
145-898 |
1.47e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 145 QYRLNSLKEEKIIIVKEFEKITKPGEMEKKMKILRESTeELRKEIMQKKLEIKNLREDLASKQKQLLKEQKELEELLGHQ 224
Cdd:pfam02463 153 ERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELII-DLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDY 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 225 VVLKDEVAHHQTIPVQIGKEIEKITRKKVEMEKKKIVLEQEVKTLNDSLKKVENKVSAIVDEKENVIKE----VEGKRAL 300
Cdd:pfam02463 232 LKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSellkLERRKVD 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 301 LEIKEREHNQLVKLLELARENEATSLTERGILDLNLRNSLIDKQNYHDELSRKQREKErdfRNLRKMELLLKVSWDALRQ 380
Cdd:pfam02463 312 DEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLE---QLEEELLAKKKLESERLSS 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 381 TQALHQRLLLEMEAIPKDDSTLSERRRELHKEVEVAKRNLAQQKIISEMESKLVEQQLAEENKLLKEQENMKELVVNLLR 460
Cdd:pfam02463 389 AAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELK 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 461 MTQIKIDEKEQKSKDFLKAQQKYTNIVKEMKAKDLEIRIHKKKKCEIYRRLREFAKLYDTIRNERNKFVNLLHKAHQKVN 540
Cdd:pfam02463 469 KSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTA 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 541 EIKERHKMSLNELEILRNSAVSQERKLQNSMLKHANNVTIRESMQNDVRKIVSKLQEMKEKKEAQLNNIDRLANTITMIE 620
Cdd:pfam02463 549 VIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGI 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 621 EEMVQLRKRYEKAVqhRNESGVQLIEREEEICIFYEKINIQEKMKLNGEIEIHLLEEKIQFLKMKIAEKQRQICVTQKLL 700
Cdd:pfam02463 629 LKDTELTKLKESAK--AKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQ 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 701 PAKRSLDADLAVLQIQFSQCTDRIKDLEKQFVKPDGENRARFLPGKDLTEKEMIQKLDKL--ELQLAKKEEKLLEKDFIY 778
Cdd:pfam02463 707 REKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKseLSLKEKELAEEREKTEKL 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 779 EQVSRLTDRLCSKTQGCKQDTLLLAKKMNGYQRRIKNATEKMMALVAELSMKQALTIELQKEVREKEDFIFTCNSRIEKG 858
Cdd:pfam02463 787 KVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKE 866
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 100814339 859 LPLNKEIEKEW-LKVLRDEEMHALAIAEKSQEFLEADNRQL 898
Cdd:pfam02463 867 ELLQELLLKEEeLEEQKLKDELESKEEKEKEEKKELEEESQ 907
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
270-650 |
1.50e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.52 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 270 NDSLKKVENKVSAIVDEKENVIKEVEGKRALLEIKEREHNQLVKLLELARENEATSLTERGILDLNLRNSLIDKQNYHDE 349
Cdd:pfam12128 192 EGKFRDVKSMIVAILEDDGVVPPKSRLNRQQVEHWIRDIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 350 LSRKQREKERDFRNLRKMELLLkvswdalrqtqalhqrlllemeaipKDDSTLSERRRELHKEVEVAKRNLAQQKiiSEM 429
Cdd:pfam12128 272 TLIASRQEERQETSAELNQLLR-------------------------TLDDQWKEKRDELNGELSAADAAVAKDR--SEL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 430 EsklveqqLAEENKLLKEQENMKELVVNLLRMTQIKID--EKEQKSKDFLKAQQKYTNivkemKAKDLEIRIHKKKKCEI 507
Cdd:pfam12128 325 E-------ALEDQHGAFLDADIETAAADQEQLPSWQSEleNLEERLKALTGKHQDVTA-----KYNRRRSKIKEQNNRDI 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 508 YRRLREFAKLYDTIRNERNKFVNLLHKAHQKVNEIKERHKMSLNELEILRNSAVSQERKLQNSmlkhannVTIRESMQND 587
Cdd:pfam12128 393 AGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQ-------ATATPELLLQ 465
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 100814339 588 VRKIVSKLQEMKEKKEAQLNNIDRLANtitmieeEMVQLRKRYEKAVQHRNESGVQLIEREEE 650
Cdd:pfam12128 466 LENFDERIERAREEQEAANAEVERLQS-------ELRQARKRRDQASEALRQASRRLEERQSA 521
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
124-620 |
1.52e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 42.73 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 124 REQLLKYQNEYNAVKEREFHNqyrLNSLKEEKII---IVKEFEK--ITKPGEMEKKMKILRESTEELRK-EIMQKkleIK 197
Cdd:TIGR01612 930 KESIEKFHNKQNILKEILNKN---IDTIKESNLIeksYKDKFDNtlIDKINELDKAFKDASLNDYEAKNnELIKY---FN 1003
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 198 NLREDLASKQKQLLKEQKELEELLGHQVVLKD----------EVAHHQTIpVQIGKEIEKITRKKVEMEKKKIVLEQEVK 267
Cdd:TIGR01612 1004 DLKANLGKNKENMLYHQFDEKEKATNDIEQKIedanknipniEIAIHTSI-YNIIDEIEKEIGKNIELLNKEILEEAEIN 1082
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 268 TLN-----DSLK-------------KVENKVSAIVDEKENVIKEVEGK-RALLEIKEREHNQLVKLLelARENEATSLTE 328
Cdd:TIGR01612 1083 ITNfneikEKLKhynfddfgkeeniKYADEINKIKDDIKNLDQKIDHHiKALEEIKKKSENYIDEIK--AQINDLEDVAD 1160
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 329 RGILDLNLRNSLIDKQNyhdeLSRKQREKERDFRNLRKmelllkvswdalrqtqalhqrLLLEMEAIPKDDSTLSErrre 408
Cdd:TIGR01612 1161 KAISNDDPEEIEKKIEN----IVTKIDKKKNIYDEIKK---------------------LLNEIAEIEKDKTSLEE---- 1211
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 409 lhkeveVAKRNLAQQKIIsemesklveqqlaeeNKLLKEQenmkelvvnllrmtqikIDEKEQKSKDFLKAQQKYTNIVK 488
Cdd:TIGR01612 1212 ------VKGINLSYGKNL---------------GKLFLEK-----------------IDEEKKKSEHMIKAMEAYIEDLD 1253
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 489 EMKAKDLEIRIHKKKKCEIYRRLREFA------KLYDTIRNERNKFVNLLHKAHQKVNEIKERhKMSLNELEILRNSAVS 562
Cdd:TIGR01612 1254 EIKEKSPEIENEMGIEMDIKAEMETFNishdddKDHHIISKKHDENISDIREKSLKIIEDFSE-ESDINDIKKELQKNLL 1332
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 100814339 563 QERKLQNSMLKHANNVTIRESM--QNDVRKIVSKLQEMKEKKEAQLNNI-DRLANTITMIE 620
Cdd:TIGR01612 1333 DAQKHNSDINLYLNEIANIYNIlkLNKIKKIIDEVKEYTKEIEENNKNIkDELDKSEKLIK 1393
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
87-328 |
1.81e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 87 QLLQNAKRFTEQIQQQQFHLQQADNFPEAFSTEVSKMREQLLKYQNEYNAVKEREFHNQYRLNSLKEEKIIIVKEFEKIt 166
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL- 784
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 167 KPGEMEKKMKILRESTEELRKEIMQKKLEIKNLREDLASKQKQLLKEQKELEELLGHQVVLKDEVAhhqtipvQIGKEIE 246
Cdd:TIGR02169 785 EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK-------SIEKEIE 857
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 247 KITRKKVEMEKKKIVLEQEVKTLNDSLKKVENKvsaiVDEKENVIKEVEGKRALLEIKEREHNQLVKLLELARENEATSL 326
Cdd:TIGR02169 858 NLNGKKEELEEELEELEAALRDLESRLGDLKKE----RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
..
gi 100814339 327 TE 328
Cdd:TIGR02169 934 SE 935
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
110-628 |
2.35e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.96 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 110 DNFPEAFSTEVSKMRE-QLLKYQNEYNA-VKEREFHNQYRLNSLKEEKIIIVKEFEKITKpgeMEKKMKILRESTEELRK 187
Cdd:TIGR01612 655 DKIYSTIKSELSKIYEdDIDALYNELSSiVKENAIDNTEDKAKLDDLKSKIDKEYDKIQN---METATVELHLSNIENKK 731
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 188 -EIMQKKLEIKN-----LREDLASKQKQLLKEQKELEELLGHQVVLKDEVAHHQTIPVQIGKEI-EKITRKKVEMEKKKI 260
Cdd:TIGR01612 732 nELLDIIVEIKKhihgeINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYnDQINIDNIKDEDAKQ 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 261 VLEQEvKTLNDSLKKVENKVSAIVDEKENVIKEVEGKRALLEIKEREHNQLVKLlELARENEATSLTERGILDLNL---R 337
Cdd:TIGR01612 812 NYDKS-KEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDS-EHEQFAELTNKIKAEISDDKLndyE 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 338 NSLIDKQNYHDELSRKQREKERDFRNLRKMELLLKVSWDALRQTQALHQRLLLEMEAIPKDDSTLSERRrELHKEVEVAK 417
Cdd:TIGR01612 890 KKFNDSKSLINEINKSIEEEYQNINTLKKVDEYIKICENTKESIEKFHNKQNILKEILNKNIDTIKESN-LIEKSYKDKF 968
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 418 RNLAQQKIiSEMESKLVEQQL----AEENKLLKEQENMKE-LVVNLLRMTQIKIDEKEQKSKDFlkaQQKYTNIVKEMKa 492
Cdd:TIGR01612 969 DNTLIDKI-NELDKAFKDASLndyeAKNNELIKYFNDLKAnLGKNKENMLYHQFDEKEKATNDI---EQKIEDANKNIP- 1043
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 493 kDLEIRIHKK------------------------KKCEI----YRRLREFAKLY---DTIRNERNKFVNLLHKAHQKVNE 541
Cdd:TIGR01612 1044 -NIEIAIHTSiyniideiekeigkniellnkeilEEAEInitnFNEIKEKLKHYnfdDFGKEENIKYADEINKIKDDIKN 1122
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 542 IKERHKMSLNELEILRNSAVS--QERKLQNSMLKHANNVTIRESMQNDVRKIVSKLQEMKEKKEAQLNNIDRLANTITMI 619
Cdd:TIGR01612 1123 LDQKIDHHIKALEEIKKKSENyiDEIKAQINDLEDVADKAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEI 1202
|
....*....
gi 100814339 620 EEEMVQLRK 628
Cdd:TIGR01612 1203 EKDKTSLEE 1211
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
503-788 |
2.36e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 503 KKCEIYRRLREFAKLYDtirneRNKFVNLLHKAHQKVNEIKERHKMSLNELEILRNSAVSQERKLQNSMLKHANNVTIRE 582
Cdd:COG1196 210 EKAERYRELKEELKELE-----AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 583 SMQNDVRKIVSKLQEMKEKKEAQLNNIDRLANTITMIEEEMVQLRKRYEKAVQHRNESGVQLIEREEEICIFYEKINIQE 662
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 663 KMKLNGEIEIHLLEEKIQFLKMKIAEKQRQICVTQKLLPAKRSLDADLAVLQIQFSQCTDRIKDLEKQFVKPDGENRArf 742
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE-- 442
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 100814339 743 lpgkdlTEKEMIQKLDKLELQLAKKEEKLLEKDFIYEQVSRLTDRL 788
Cdd:COG1196 443 ------ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
118-455 |
2.78e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.65 E-value: 2.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 118 TEVSKMREQLLKYQNEYNAVKEREFHNQYRLNSLKEEKIIIVKEFEKITKPGEMEKKMKILRESTEELRKEIMQKKLeik 197
Cdd:pfam05557 149 SEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARIPELEKELERLREHNKHLNENIENKLL--- 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 198 nLREDLASKQKQLLKEQKELEELLGHQVV---LKDEVAHHQTIPVQIGKEI---EKITRKKVEMEKKKIVLEQEVKTLND 271
Cdd:pfam05557 226 -LKEEVEDLKRKLEREEKYREEAATLELEkekLEQELQSWVKLAQDTGLNLrspEDLSRRIEQLQQREIVLKEENSSLTS 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 272 SLKKVENKVSAIVDEKENVIKEVEGkralLEIKEREHNQLVKLL-----------------------ELARENEATSLTE 328
Cdd:pfam05557 305 SARQLEKARRELEQELAQYLKKIED----LNKKLKRHKALVRRLqrrvllltkerdgyrailesydkELTMSNYSPQLLE 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 329 RgildLNLRNSLIDKQNYHDELSRKQREK-ERDFRNLRKMELLLKVSWDALRQTQALHQR---------LLLEMEAIPKD 398
Cdd:pfam05557 381 R----IEEAEDMTQKMQAHNEEMEAQLSVaEEELGGYKQQAQTLERELQALRQQESLADPsyskeevdsLRRKLETLELE 456
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 100814339 399 DSTLSERRRELhkEVEVAKRNLAQQKIISEME---------SKLVEQQLAEENKLLKEQENMKELV 455
Cdd:pfam05557 457 RQRLREQKNEL--EMELERRCLQGDYDPKKTKvlhlsmnpaAEAYQQRKNQLEKLQAEIERLKRLL 520
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
169-343 |
4.35e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 4.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 169 GEMEKKMKILRESTEELRKEIMQKKLEIKNLREDLASKQKQLLKEQKELEELLgHQVVLKDEVAHHQTIpVQIGKEIEKI 248
Cdd:PRK00409 512 GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEE-DKLLEEAEKEAQQAI-KEAKKEADEI 589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 249 TRKKVEMEKKKIV------LEQEVKTLNDSLKKVENKVsaiVDEKENVIKEVEGKRalleIKEREHNQLVKLLELARENE 322
Cdd:PRK00409 590 IKELRQLQKGGYAsvkaheLIEARKRLNKANEKKEKKK---KKQKEKQEELKVGDE----VKYLSLGQKGEVLSIPDDKE 662
|
170 180
....*....|....*....|.
gi 100814339 323 ATslTERGILDLNLRNSLIDK 343
Cdd:PRK00409 663 AI--VQAGIMKMKVPLSDLEK 681
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
120-453 |
5.26e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 120 VSKMREQLLKYQNEYNAVKEREfhnqYRLNSLKEEKIiivKEFEKITKPGEMEKKMKILRESTEELRKEIMQKKLEIknL 199
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENI----ERLDLIIDEKR---QQLERLRREREKAERYQALLKEKREYEGYELLKEKEA--L 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 200 REDLASKQKQLLKEQKELEELLGHQVVLKDEVAHHQTIPVQIGKEIEKITRKKVEMEKKKIV--------LEQEVKTLND 271
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGeleaeiasLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 272 SLKKVENKVSAIVDEKENVIKEVEGKRALLEIKEREHNQLVKLLELARENEATSLTERGILDLNLRNSLIDKQNYHDELS 351
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 352 RKQREKERDFRNLRKMELLLKVSWDALRQTQAlhqrlllEMEAIPKDDSTLSERRRELHKEVEVAKRNLAQQKIISEMES 431
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNA-------AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
330 340
....*....|....*....|..
gi 100814339 432 KLVEQQLAEENKLLKEQENMKE 453
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQR 490
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
147-299 |
5.42e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 5.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 147 RLNSLKEEKIIIVKEfEKITKPGEMEKKMKILRESTEELRKEIMQKKLEIKNLREDLASKQKQLLKEQKELEELLGHQVV 226
Cdd:PRK12704 50 EAEAIKKEALLEAKE-EIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEK 128
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 100814339 227 LKDEVahhQTIPVQIGKEIEKITRKKVEmEKKKIVLEQeVKtlndslKKVENKVSAIVDEKENVIKEVEGKRA 299
Cdd:PRK12704 129 KEEEL---EELIEEQLQELERISGLTAE-EAKEILLEK-VE------EEARHEAAVLIKEIEEEAKEEADKKA 190
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
170-329 |
5.79e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 5.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 170 EMEKKMKILRESTEELRKEIMQKKLEIKNLREDLASKQKQLLKEQKELEELLGHQVVLKDEVAHHQTIpvqigKEIEKIT 249
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNN-----KEYEALQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 250 RKKVEMEKKKIVLEQEVKTLNDSLKKVENKVSAIVDEKENVIKEVEGKRALLEIKEREHNQLVKLLELARENEATSLTER 329
Cdd:COG1579 96 KEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPE 175
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
160-777 |
9.51e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 39.88 E-value: 9.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 160 KEFEKITKPGEMEKKMKILRESTEELRKEIMqkklEIKNLREDLASKQKQLLKEQKELEEllghqvvlkDEVAHHQTIPv 239
Cdd:PRK01156 153 KILDEILEINSLERNYDKLKDVIDMLRAEIS----NIDYLEEKLKSSNLELENIKKQIAD---------DEKSHSITLK- 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 240 qigkEIEKITRKKVEMEKKKIVLEQEVKTLNdSLKKVENKVsaivdekENVIKEVEGKRALLEIKEREHNQLVKLLELAR 319
Cdd:PRK01156 219 ----EIERLSIEYNNAMDDYNNLKSALNELS-SLEDMKNRY-------ESEIKTAESDLSMELEKNNYYKELEERHMKII 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 320 ENEATSLTERGILDLNLRNSLIDKQNYhdeLSRKQREKERDFRNLRKMELLLKVSWDALRQTQalhqrlllEMEAIPKDD 399
Cdd:PRK01156 287 NDPVYKNRNYINDYFKYKNDIENKKQI---LSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKS--------RYDDLNNQI 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 400 STLserrRELHKEVEVAKRNLAQQKIISEMESKLVEQQLAEENKLLKEQENMKELVVNLLRMTQIKIDEKEQKSKDFlkA 479
Cdd:PRK01156 356 LEL----EGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSL--N 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 480 QQKYTNIVKEMKAKDLEIRIHKKKKCEIY-RRLREfaklyDTIRNERNKFVNLLHKAHQKVNEIkerhkmslnELEIlrn 558
Cdd:PRK01156 430 QRIRALRENLDELSRNMEMLNGQSVCPVCgTTLGE-----EKSNHIINHYNEKKSRLEEKIREI---------EIEV--- 492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 559 SAVSQERKLQNSMLKHANNVTIR---------ESMQNDVRKIVSKLQEMKEkKEAQLNNIDRLANTITMieEEMVQLRKR 629
Cdd:PRK01156 493 KDIDEKIVDLKKRKEYLESEEINksineynkiESARADLEDIKIKINELKD-KHDKYEEIKNRYKSLKL--EDLDSKRTS 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 630 YEKAVQHR------------NESGVQL---IEREEEICIFYEKIN-IQEKMKLNGEIEIHLLEEK---IQFLKMKIAEKQ 690
Cdd:PRK01156 570 WLNALAVIslidietnrsrsNEIKKQLndlESRLQEIEIGFPDDKsYIDKSIREIENEANNLNNKyneIQENKILIEKLR 649
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 691 RQICVTQKLLPAKRSLDADLAVLQIQFSQCTDRIKDLEKQFVKPDGEnrarfLPGKDLTEKEMIQKLDKLELQLAKKEEK 770
Cdd:PRK01156 650 GKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKAN-----RARLESTIEILRTRINELSDRINDINET 724
|
....*..
gi 100814339 771 LLEKDFI 777
Cdd:PRK01156 725 LESMKKI 731
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
200-496 |
9.66e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.06 E-value: 9.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 200 REDLASKQKQLLKEQKELEELLGHQVVLKDEVAHHQTIPVQIGKEIEKiTRKKVEMEKKKIVLEQEVKTLNDSLKKVE-- 277
Cdd:COG5022 809 RKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLK-AKKRFSLLKKETIYLQSAQRVELAERQLQel 887
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 278 -------NKVSAIVDEKENVIKEVEGKRALLEIKEREHnQLVKLLELARENEATSLTERGILDLNLRNSLIDKQNYHDEL 350
Cdd:COG5022 888 kidvksiSSLKLVNLELESEIIELKKSLSSDLIENLEF-KTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKL 966
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 100814339 351 SRKQREKERDFRNLRKMELLLKVSWDALRQTQALHQRLLLEMEAIPKDDSTLSERRRelhkevEVAKRNLAQQKIISEME 430
Cdd:COG5022 967 KETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPV------EVAELQSASKIISSEST 1040
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 100814339 431 SKLVEQQLAE-ENKLLKEQENMKElvvnllRMTQIKIDEKEQKSKDFLKAQQKYT-NIVKEMKAKDLE 496
Cdd:COG5022 1041 ELSILKPLQKlKGLLLLENNQLQA------RYKALKLRRENSLLDDKQLYQLESTeNLLKTINVKDLE 1102
|
|
| |
