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Conserved domains on  [gi|9910520|ref|NP_064471|]
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plasmalemma vesicle-associated protein [Rattus norvegicus]

Protein Classification

PV-1 domain-containing protein( domain architecture ID 12071456)

PV-1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PV-1 super family cl26957
PV-1 protein (PLVAP); This family consists of several PV-1 (PLVAP) proteins which seem to be ...
 2-436 0e+00

PV-1 protein (PLVAP); This family consists of several PV-1 (PLVAP) proteins which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam06637:

Pssm-ID: 461970 [Multi-domain]  Cd Length: 439  Bit Score: 673.56  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520      2 GLSMDR-SPYSRTGDRDRGCWYYLRYFFLFVSLIQFLIILGLVLFMIYGNVHATTESSLRATEIRADNLYSQVVGLSAAQ 80
Cdd:pfam06637   1 GLAMEHgGAYARAGGSPRGCWYYLRYFFLFVSLIQFLIILGLVLFMVYGNVHVSTESNLQATERRAEGLYSQVVGLTASQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520     81 ANLSKQLNISTLVKDTVMQQLLTTRREVERINASFRQCQGDLITYINYNRFIAAIILSEKQCQEQLKEGNKTCEALLFKL 160
Cdd:pfam06637  81 ANLSKELNLTARAKDAIMQMLLSARRDLDRINASFRQCQGDRVIYINNQRYMAAIILSEKQCQEQLKEANKSCDALLLML 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520    161 GEKVKTLEMEVVKEKAVCSKDKDSLLAGKRQAEMQQEACGKAREQQKQDQQVTEEQLRKVQSLCLPLDQEKFQADVLNVW 240
Cdd:pfam06637 161 GQKAKTLEVELAKEKAVCTKDKESLLLSKRVAEEQLAECGKAREQQQQERQLAEDRLQKVQSLCLPLDKDKFETDLRNLW 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520    241 RDSLVYRSLDNIGY--HYSLMPEFSSLRRTCESLPGIMTTKVEELARGLRAGIERVTRENGELRRQKLELERAIQGEREA 318
Cdd:pfam06637 241 RDSIIPRTLDTLGYnlYHPLGSELASIRRTCDSLPSIMSTKVEELARSLRAGIERVARENSDLQRQKLEAEQSLRASQEA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520    319 RTRAGTEAQARETQLRTECARQTQLALEEKAALRTQRDDLERQLEARKRELEQLRTEVDVRISALDTCVKAKSLPAIQPR 398
Cdd:pfam06637 321 KEKVEKEAQAREAKLQAECARQTQLALEEKAVLRKERDNLAKELEEKKREVEQLKMQLAVRNSALDTCIKAKSQPAIPLP 400

                         410       420       430
                  ....*....|....*....|....*....|....*....
gi 9910520    399 LPGPPPNPPP-IDPASLEEFKKRILESQRPPLVNPAVPP 436
Cdd:pfam06637 401 RPVGPVPNPPpIDPASLEEFKKRILESQRPPAGNPAASS 439
 
Name Accession Description Interval E-value
PV-1 pfam06637
PV-1 protein (PLVAP); This family consists of several PV-1 (PLVAP) proteins which seem to be ...
 2-436 0e+00

PV-1 protein (PLVAP); This family consists of several PV-1 (PLVAP) proteins which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms. The function of this family is unknown.


Pssm-ID: 461970 [Multi-domain]  Cd Length: 439  Bit Score: 673.56  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520      2 GLSMDR-SPYSRTGDRDRGCWYYLRYFFLFVSLIQFLIILGLVLFMIYGNVHATTESSLRATEIRADNLYSQVVGLSAAQ 80
Cdd:pfam06637   1 GLAMEHgGAYARAGGSPRGCWYYLRYFFLFVSLIQFLIILGLVLFMVYGNVHVSTESNLQATERRAEGLYSQVVGLTASQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520     81 ANLSKQLNISTLVKDTVMQQLLTTRREVERINASFRQCQGDLITYINYNRFIAAIILSEKQCQEQLKEGNKTCEALLFKL 160
Cdd:pfam06637  81 ANLSKELNLTARAKDAIMQMLLSARRDLDRINASFRQCQGDRVIYINNQRYMAAIILSEKQCQEQLKEANKSCDALLLML 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520    161 GEKVKTLEMEVVKEKAVCSKDKDSLLAGKRQAEMQQEACGKAREQQKQDQQVTEEQLRKVQSLCLPLDQEKFQADVLNVW 240
Cdd:pfam06637 161 GQKAKTLEVELAKEKAVCTKDKESLLLSKRVAEEQLAECGKAREQQQQERQLAEDRLQKVQSLCLPLDKDKFETDLRNLW 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520    241 RDSLVYRSLDNIGY--HYSLMPEFSSLRRTCESLPGIMTTKVEELARGLRAGIERVTRENGELRRQKLELERAIQGEREA 318
Cdd:pfam06637 241 RDSIIPRTLDTLGYnlYHPLGSELASIRRTCDSLPSIMSTKVEELARSLRAGIERVARENSDLQRQKLEAEQSLRASQEA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520    319 RTRAGTEAQARETQLRTECARQTQLALEEKAALRTQRDDLERQLEARKRELEQLRTEVDVRISALDTCVKAKSLPAIQPR 398
Cdd:pfam06637 321 KEKVEKEAQAREAKLQAECARQTQLALEEKAVLRKERDNLAKELEEKKREVEQLKMQLAVRNSALDTCIKAKSQPAIPLP 400

                         410       420       430
                  ....*....|....*....|....*....|....*....
gi 9910520    399 LPGPPPNPPP-IDPASLEEFKKRILESQRPPLVNPAVPP 436
Cdd:pfam06637 401 RPVGPVPNPPpIDPASLEEFKKRILESQRPPAGNPAASS 439
PTZ00121 PTZ00121
MAEBL; Provisional
 139-379 6.25e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.52  E-value: 6.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520    139 EKQCQEQLK----EGNKTCEALLFKLGEKVKTLEMEVVKEKavcsKDKDSLlagkRQAEMQQEA--CGKAREQQKQDQQV 212
Cdd:PTZ00121 1481 EAKKADEAKkkaeEAKKKADEAKKAAEAKKKADEAKKAEEA----KKADEA----KKAEEAKKAdeAKKAEEKKKADELK 1552

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520    213 TEEQLRKVQSLCLPLDQEKFQADVLNVWRDSLVYRSLDNIGYHYSLMPEFSSLRRTCESLPGI--MTTKVEEL--ARGLR 288
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAeeAKIKAEELkkAEEEK 1632

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520    289 AGIERVTRENGELRRQ-----KLELERAIQGEREARTRAGTEAQARETQLRTECARQTQLALEEKAALRTQRDDLERQLE 363
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKaeelkKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712

                         250
                  ....*....|....*.
gi 9910520    364 ARKRELEQLRTEVDVR 379
Cdd:PTZ00121 1713 EEKKKAEELKKAEEEN 1728
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 281-426 1.57e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 44.16  E-value: 1.57e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520  281 EELARGLRAGIERVTRENGELRRQKLELERAIQGEREARTRAGTEAQARETQLRTECARQTQLAlEEKAALRTQRDDLER 360
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE-ERLEELEEELAELEE 330

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 9910520  361 QLEARKRELEQLRTEVDVRISALDTCVKAKslpAIQPRLPGPPPNPPPIDPASLEEFKKRILESQR 426
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAEL---AEAEEALLEAEAELAEAEEELEELAEELLEALR 393
 
Name Accession Description Interval E-value
PV-1 pfam06637
PV-1 protein (PLVAP); This family consists of several PV-1 (PLVAP) proteins which seem to be ...
 2-436 0e+00

PV-1 protein (PLVAP); This family consists of several PV-1 (PLVAP) proteins which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms. The function of this family is unknown.


Pssm-ID: 461970 [Multi-domain]  Cd Length: 439  Bit Score: 673.56  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520      2 GLSMDR-SPYSRTGDRDRGCWYYLRYFFLFVSLIQFLIILGLVLFMIYGNVHATTESSLRATEIRADNLYSQVVGLSAAQ 80
Cdd:pfam06637   1 GLAMEHgGAYARAGGSPRGCWYYLRYFFLFVSLIQFLIILGLVLFMVYGNVHVSTESNLQATERRAEGLYSQVVGLTASQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520     81 ANLSKQLNISTLVKDTVMQQLLTTRREVERINASFRQCQGDLITYINYNRFIAAIILSEKQCQEQLKEGNKTCEALLFKL 160
Cdd:pfam06637  81 ANLSKELNLTARAKDAIMQMLLSARRDLDRINASFRQCQGDRVIYINNQRYMAAIILSEKQCQEQLKEANKSCDALLLML 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520    161 GEKVKTLEMEVVKEKAVCSKDKDSLLAGKRQAEMQQEACGKAREQQKQDQQVTEEQLRKVQSLCLPLDQEKFQADVLNVW 240
Cdd:pfam06637 161 GQKAKTLEVELAKEKAVCTKDKESLLLSKRVAEEQLAECGKAREQQQQERQLAEDRLQKVQSLCLPLDKDKFETDLRNLW 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520    241 RDSLVYRSLDNIGY--HYSLMPEFSSLRRTCESLPGIMTTKVEELARGLRAGIERVTRENGELRRQKLELERAIQGEREA 318
Cdd:pfam06637 241 RDSIIPRTLDTLGYnlYHPLGSELASIRRTCDSLPSIMSTKVEELARSLRAGIERVARENSDLQRQKLEAEQSLRASQEA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520    319 RTRAGTEAQARETQLRTECARQTQLALEEKAALRTQRDDLERQLEARKRELEQLRTEVDVRISALDTCVKAKSLPAIQPR 398
Cdd:pfam06637 321 KEKVEKEAQAREAKLQAECARQTQLALEEKAVLRKERDNLAKELEEKKREVEQLKMQLAVRNSALDTCIKAKSQPAIPLP 400

                         410       420       430
                  ....*....|....*....|....*....|....*....
gi 9910520    399 LPGPPPNPPP-IDPASLEEFKKRILESQRPPLVNPAVPP 436
Cdd:pfam06637 401 RPVGPVPNPPpIDPASLEEFKKRILESQRPPAGNPAASS 439
PTZ00121 PTZ00121
MAEBL; Provisional
 139-379 6.25e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.52  E-value: 6.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520    139 EKQCQEQLK----EGNKTCEALLFKLGEKVKTLEMEVVKEKavcsKDKDSLlagkRQAEMQQEA--CGKAREQQKQDQQV 212
Cdd:PTZ00121 1481 EAKKADEAKkkaeEAKKKADEAKKAAEAKKKADEAKKAEEA----KKADEA----KKAEEAKKAdeAKKAEEKKKADELK 1552

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520    213 TEEQLRKVQSLCLPLDQEKFQADVLNVWRDSLVYRSLDNIGYHYSLMPEFSSLRRTCESLPGI--MTTKVEEL--ARGLR 288
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAeeAKIKAEELkkAEEEK 1632

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520    289 AGIERVTRENGELRRQ-----KLELERAIQGEREARTRAGTEAQARETQLRTECARQTQLALEEKAALRTQRDDLERQLE 363
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKaeelkKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712

                         250
                  ....*....|....*.
gi 9910520    364 ARKRELEQLRTEVDVR 379
Cdd:PTZ00121 1713 EEKKKAEELKKAEEEN 1728
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 281-426 1.57e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 44.16  E-value: 1.57e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520  281 EELARGLRAGIERVTRENGELRRQKLELERAIQGEREARTRAGTEAQARETQLRTECARQTQLAlEEKAALRTQRDDLER 360
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE-ERLEELEEELAELEE 330

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 9910520  361 QLEARKRELEQLRTEVDVRISALDTCVKAKslpAIQPRLPGPPPNPPPIDPASLEEFKKRILESQR 426
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAEL---AEAEEALLEAEAELAEAEEELEELAEELLEALR 393
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 278-384 6.98e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.23  E-value: 6.98e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520  278 TKVEELARGLRAGIERVTRENGELRRQKLELERAIQGEREARTRAgTEAQARETQLRTECARQTQ---LALEEKAALRTQ 354
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR-RELEERLEELEEELAELEEeleELEEELEELEEE 345

                        90       100       110
                ....*....|....*....|....*....|
gi 9910520  355 RDDLERQLEARKRELEQLRTEVDVRISALD 384
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELA 375
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 277-384 8.37e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.85  E-value: 8.37e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520  277 TTKVEELARGLRAGIERVTRENGELRRQKLELERAIQGEREARTRAGTEAQ--ARETQLRTECARQTQLALEEKAALRTQ 354
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQdiARLEERRRELEERLEELEEELAELEEE 331

                        90       100       110
                ....*....|....*....|....*....|
gi 9910520  355 RDDLERQLEARKRELEQLRTEVDVRISALD 384
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELA 361
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 281-383 1.17e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.46  E-value: 1.17e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520  281 EELARGLRAGIERVTRENGELRRQKLELERAIQGEREARTRAGTEAQARETQLRT--ECARQTQLALEEKAALRTQRDDL 358
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEleELAEELLEALRAAAELAAQLEEL 405

                        90       100
                ....*....|....*....|....*
gi 9910520  359 ERQLEARKRELEQLRTEVDVRISAL 383
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEAL 430
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
287-373 1.21e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.44  E-value: 1.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520   287 LRAGIERVTRENGELRRQKLELERAIQ--GEREARTRAG-TEAQARETQLRTECARQTQLALEEKAALRTQRDDLERQLE 363
Cdd:COG4913  343 LEREIERLERELEERERRRARLEALLAalGLPLPASAEEfAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELR 422

                         90
                 ....*....|
gi 9910520   364 ARKRELEQLR 373
Cdd:COG4913  423 ELEAEIASLE 432
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
278-377 1.57e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.05  E-value: 1.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520   278 TKVEELARGLRAGIERVTRENGELRRQKLELERAIQG----------------EREARTRAGTEAQARE----------- 330
Cdd:COG4913  298 EELRAELARLEAELERLEARLDALREELDELEAQIRGnggdrleqlereierlERELEERERRRARLEAllaalglplpa 377

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 9910520   331 -----TQLRTECARQTQLALEEKAALRTQRDDLERQLEARKRELEQLRTEVD 377
Cdd:COG4913  378 saeefAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 277-379 1.71e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 40.69  E-value: 1.71e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520  277 TTKVEELARGLRAGIERvtRENGELRRQKLELERA-----IQGEREARTRAGTEAQARETQLRTECARQTQLALEEKAAL 351
Cdd:COG1196 294 LAELARLEQDIARLEER--RRELEERLEELEEELAeleeeLEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371

                        90       100
                ....*....|....*....|....*...
gi 9910520  352 RTQRDDLERQLEARKRELEQLRTEVDVR 379
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELA 399
DUF5320 pfam17253
Family of unknown function (DUF5320); A number of this family members have a coiled coil ...
 346-372 2.17e-03

Family of unknown function (DUF5320); A number of this family members have a coiled coil domain at the C terminal.


Pssm-ID: 435815  Cd Length: 99  Bit Score: 37.24  E-value: 2.17e-03
                          10        20
                  ....*....|....*....|....*..
gi 9910520    346 EEKAALRTQRDDLERQLEARKRELEQL 372
Cdd:pfam17253  73 DEKELLKEQAEFLEEELEAIKKRLEEL 99
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 265-384 2.33e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 39.52  E-value: 2.33e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520  265 LRRTCESLPGIMTTKVEELArGLRAGIERVTRENGELRRQKLELERAIQGEREARTRAGT---------EAQARETQLRT 335
Cdd:COG1579  22 LEHRLKELPAELAELEDELA-ALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEqlgnvrnnkEYEALQKEIES 100

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 9910520  336 ECARQTQL------ALEEKAALRTQRDDLERQLEARKRELEQLRTEVDVRISALD 384
Cdd:COG1579 101 LKRRISDLedeileLMERIEELEEELAELEAELAELEAELEEKKAELDEELAELE 155
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 279-375 2.46e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 40.31  E-value: 2.46e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520  279 KVEELARGLRAGIERVTRENGELRRQKLELERAIQGEREARTRA---GTEAQARETQLRTECAR---QTQLALEEKAALR 352
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELeleLEEAQAEEYELLAELARleqDIARLEERRRELE 315

                        90       100
                ....*....|....*....|...
gi 9910520  353 TQRDDLERQLEARKRELEQLRTE 375
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEE 338
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
281-378 2.79e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 40.28  E-value: 2.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520   281 EELARGLRAgiERVTRENGELRRQKLELERAIQGEREARTRAGTEAQARETQLRTECARQTQLALEEKAALRTQRDDLER 360
Cdd:COG4913  275 EYLRAALRL--WFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLER 352

                         90
                 ....*....|....*...
gi 9910520   361 QLEARKRELEQLRTEVDV 378
Cdd:COG4913  353 ELEERERRRARLEALLAA 370
DUF4670 pfam15709
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ...
 284-373 7.24e-03

Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.


Pssm-ID: 464815 [Multi-domain]  Cd Length: 522  Bit Score: 38.78  E-value: 7.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520    284 ARGLRAGIERVTRENGELRRQKLELERAIQGEREARTRAGTEAQAR-ETQLRTECARQTQLALEEKAALRTQRDDLE--R 360
Cdd:pfam15709 411 RLQLQAAQERARQQQEEFRRKLQELQRKKQQEEAERAEAEKQRQKElEMQLAEEQKRLMEMAEEERLEYQRQKQEAEekA 490

                          90
                  ....*....|....*.
gi 9910520    361 QLEA---RKRELEQLR 373
Cdd:pfam15709 491 RLEAeerRQKEEEAAR 506
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 279-384 7.41e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 38.57  E-value: 7.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9910520    279 KVEELARglRAGIERVTRENGELRRQKLELERA--------------IQGEREARTRAGTEAQARETQLRTECA-RQTQL 343
Cdd:pfam17380 452 RLEEQER--QQQVERLRQQEEERKRKKLELEKEkrdrkraeeqrrkiLEKELEERKQAMIEEERKRKLLEKEMEeRQKAI 529

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 9910520    344 ALEEKAALRTQRDDLERQLEARKRELEQLR--TEVDVRISALD 384
Cdd:pfam17380 530 YEEERRREAEEERRKQQEMEERRRIQEQMRkaTEERSRLEAME 572
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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