|
Name |
Accession |
Description |
Interval |
E-value |
| Rabaptin |
pfam03528 |
Rabaptin; |
9-495 |
0e+00 |
|
Rabaptin;
Pssm-ID: 367545 [Multi-domain] Cd Length: 486 Bit Score: 758.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 9 QPDVSLQQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENI 88
Cdd:pfam03528 1 QPDEDLQQRVAELEKENAEFYRLKQQLEAEFNQKRAKFKELYLAKEEDLKRQNAVLQEAQVELDALQNQLALARAEMENI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 89 KAIATVSENTKQEAIDEVKRQWREEVASLQAIMKETVRDYEHQFHLRLEQERAQWAQYRESAEREIADLRRRLSEGQEEE 168
Cdd:pfam03528 81 KAVATVSENTKQEAIDEVKSQWQEEVASLQAIMKETVREYEVQFHRRLEQERAQWNQYRESAEREIADLRRRLSEGQEEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 169 NLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVL 248
Cdd:pfam03528 161 NLEDEMKKAQEDAEKLRSVVMPMEKEIAALKAKLTEAEDKIKELEASKMKELNHYLEAEKSCRTDLEMYVAVLNTQKSVL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 249 QEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQRMEIVLTSEQLRQVEELKKKDQEEDEQQR 328
Cdd:pfam03528 241 QEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQRMESVLTSEQLRQVEEIKKKDQEEHKRAR 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 329 VNKRKDNKKTDTEEEVKIPVVCALTQEESSTPLSNEEEHLDSTHGSVHSLDADLMLPSGDPFSKSDnDMFKDGLRRAQST 408
Cdd:pfam03528 321 THKEKETLKSDREHTVSIHAVFSPAGVETSAPLSNVEEQINSAHGSVHSLDTDVVLGAGDSFNKQE-DPFKEGLRRAQST 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 409 DSLGTSSSLQSKALGYNYKAKSAGNLDESDFGPLVGADSVSENFDTVSLGSLQMPSGFMLTKDQERAIKAMTPEQEETAS 488
Cdd:pfam03528 400 DSLGSSSSLQHKFLGHNQKAKSAGNLDESDFGPLVGADSVSENFDTSSLGSLKMPSGFMLTKDQEKAIKAMTPEQEETAS 479
|
....*..
gi 238231439 489 LLSSVTQ 495
Cdd:pfam03528 480 LLSSVTQ 486
|
|
| Rab5-bind |
pfam09311 |
Rabaptin-like protein; Members of this family are predominantly found in Rabaptin and allow ... |
533-839 |
1.22e-120 |
|
Rabaptin-like protein; Members of this family are predominantly found in Rabaptin and allow for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes.
Pssm-ID: 462752 [Multi-domain] Cd Length: 307 Bit Score: 367.37 E-value: 1.22e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 533 CDMCSNYEKQLQGIQIQEAETRDQVKKLQLMLRQANDQLEKTMKEKQELEDFLKQSAEDSSHQISALVLRAQASEVLLEE 612
Cdd:pfam09311 1 CDMCSNYEKQLQAIQEQEAETRDQVKKLQEMLRQANDQLEKTMKDKKELEDKMNQLSEETSNQVSTLAKRNQKSETLLDE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 613 LQQSFSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHVSLQLAEDFILPDTVEVLRELVLKYRENIVHVR 692
Cdd:pfam09311 81 LQQAFSQAKRNFQDQLAVLMDSREQVSDELVRLQKDNESLQGKHSLHVSLQQAEKFDMPDTVQELQELVLKYREELIEVR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 693 TAADHMEEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESL 772
Cdd:pfam09311 161 TAADHMEEKLKAEILFLKEQIQAEQCLKENLEETLQAEIENCKEEIASISSLKVELERIKAEKEQLENGLTEKIRQLEDL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 238231439 773 QEMKVNLEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQAD 839
Cdd:pfam09311 241 QTTKGSLETQLKKETNEKAAVEQLVFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQAD 307
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
37-824 |
1.61e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.71 E-value: 1.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 37 QEFNQKRAKFKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAiATVSENTKQEAIDEVKRQWREEVAS 116
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQK-ELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 117 LQAIMKETVRDYEHQFH--LRLEQERAQWAQYRESAEREIADLRRRLSEGQEE-ENLENEMKKAQEDAEKLRSVVMPMEK 193
Cdd:TIGR02168 314 LERQLEELEAQLEELESklDELAEELAELEEKLEELKEELESLEAELEELEAElEELESRLEELEEQLETLRSKVAQLEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 194 EIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCrtdLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQH 273
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL---EEAELKELQAELEELEEELEELQEELERLEEALEELREEL 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 274 NQLKHTWQKANDQFLESQRLLmRDMQRMEIVLTSEQLRQVEELKKKDQEEDEQQRVnkrKDNKKTDTEEEVKIPVVC--- 350
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARL-DSLERLQENLEGFSEGVKALLKNQSGLSGILGVL---SELISVDEGYEAAIEAALggr 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 351 --ALTQEESSTPLSNEEEHLDSTHGSVHSLDADLMLPSGDPFSksdndmfkDGLRRAQSTDSLGTSSSLQSKALGYnyka 428
Cdd:TIGR02168 547 lqAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGN--------DREILKNIEGFLGVAKDLVKFDPKL---- 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 429 ksagnldESDFGPLVGADSVSENFDT--------------VSL-GSLQMPSGFMLTKD---------QERAIKAMTPEQE 484
Cdd:TIGR02168 615 -------RKALSYLLGGVLVVDDLDNalelakklrpgyriVTLdGDLVRPGGVITGGSaktnssileRRREIEELEEKIE 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 485 ETASLLSSVTQGMESAYVSPSGYRLVSE---TEWNLLQKEVHNAGNKLGRRCDMCSNYEKQLQGIQIQEAETRDQVKKLQ 561
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEELEEELEqlrKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 562 LMLRQANDQLEKTMKEKQELEDFLKQSAEDSSHQISAL-----------------VLRAQASEVLLEELQQSF---SQAK 621
Cdd:TIGR02168 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALdelraeltllneeaanlRERLESLERRIAATERRLedlEEQI 847
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 622 RDVQEQMAVLMQSREQVSEELVRLQKDNDSLQ---GKHSLHVSLQLAEDFILPDTVEVLRELVLKYRENIVHVRTAADHM 698
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEELIEELESELEALLnerASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 699 E---EKLKAEILFLKEQIQAEQCLKENLEETLQLEIEnckeeiASISSLKAELERIKVEKGQLESTLREKSQQLESLQEM 775
Cdd:TIGR02168 928 ElrlEGLEVRIDNLQERLSEEYSLTLEEAEALENKIE------DDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKER 1001
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 238231439 776 KVNLEEQLKKETAAKATVEQLMfEEKNKAQRLQTeLDVSEQVQRDFVKL 824
Cdd:TIGR02168 1002 YDFLTAQKEDLTEAKETLEEAI-EEIDREARERF-KDTFDQVNENFQRV 1048
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
134-842 |
2.85e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.94 E-value: 2.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 134 LRLEQERAQWAQYRESAEREIadlrrrlsegQEEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELE 213
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAE----------EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 214 ASKV-------------KELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTW 280
Cdd:TIGR02168 302 QQKQilrerlanlerqlEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 281 QKAND---QFLESQRLLMRDMQRMEIVLTSEQLRQVEELKKKDQEEDEQQRVNKRKDNKKTDTEEEVKIPVVCAL----T 353
Cdd:TIGR02168 382 ETLRSkvaQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELerleE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 354 QEESSTPLSNE-EEHLDSTHGSVHSLDADL-----MLPSGDPFSKSDNDMFKDGLRRAQSTDSLGTSSSLQSK------- 420
Cdd:TIGR02168 462 ALEELREELEEaEQALDAAERELAQLQARLdslerLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaiea 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 421 ALGYNYKA----------KSAGNLDESDFGPLV--GADSVSENFDTVSLG-SLQMPSGFMLTKDqeRAIKAMTPEQEETA 487
Cdd:TIGR02168 542 ALGGRLQAvvvenlnaakKAIAFLKQNELGRVTflPLDSIKGTEIQGNDReILKNIEGFLGVAK--DLVKFDPKLRKALS 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 488 SLLS------SVTQGMESAYVSPSGYRLVSE------TEWNLLQKEVHNAGNKLGRRCDMcSNYEKQLQGIQIQEAETRD 555
Cdd:TIGR02168 620 YLLGgvlvvdDLDNALELAKKLRPGYRIVTLdgdlvrPGGVITGGSAKTNSSILERRREI-EELEEKIEELEEKIAELEK 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 556 QVKKLQLMLRQANDQLEKTMKEKQELedflkqsaEDSSHQISALVLRAQASEVLLEELQQSFSQAKRDVQEQMAVLMQSR 635
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEEL--------SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 636 EQVSEELVRLQKDNDSLQgkhslhvslqlaedfilpDTVEVLRELVLKYRENIVHVRTAADHMEEKLkAEILFLKEQIQA 715
Cdd:TIGR02168 771 EEAEEELAEAEAEIEELE------------------AQIEQLKEELKALREALDELRAELTLLNEEA-ANLRERLESLER 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 716 EQCLKENLEETLQLEIENCKEEIAsisSLKAELERIKVEKGQLESTLREKSQQLESLQEMKVNLEEQLKKETAAKATVEQ 795
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIE---SLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 238231439 796 LMFEEKNKAQRLQTELdvsEQVQRDFVKLSQTLQVQLERIRQADSLE 842
Cdd:TIGR02168 909 KRSELRRELEELREKL---AQLELRLEGLEVRIDNLQERLSEEYSLT 952
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
13-838 |
8.41e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.40 E-value: 8.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 13 SLQQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKELylakeEDLKRQNAVLQAAQDdlghlrtqlwEAQAEMENIKAia 92
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKL-----EELRLEVSELEEEIE----------ELQKELYALAN-- 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 93 tvsentKQEAIDEVKRQWREEVASLQAIMKETVRDYEHQFH--LRLEQERAQWAQYRESAEREIADLRRRLSEGQEE-EN 169
Cdd:TIGR02168 296 ------EISRLEQQKQILRERLANLERQLEELEAQLEELESklDELAEELAELEEKLEELKEELESLEAELEELEAElEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 170 LENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCrtdLEMYVAVLNTQKSVLQ 249
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL---EEAELKELQAELEELE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 250 EDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLmRDMQRMEIVLTSEQLRQVEELKKKDQEEDEQQRV 329
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL-DSLERLQENLEGFSEGVKALLKNQSGLSGILGVL 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 330 nkrKDNKKTDTEEEVKIPVVC-----ALTQEESSTPLSNEEEHLDSTHGSVHSLDADLMLPSGDPFSksdndmfkDGLRR 404
Cdd:TIGR02168 526 ---SELISVDEGYEAAIEAALggrlqAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGN--------DREIL 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 405 AQSTDSLGTSSSLQSKALGYnykaksagnldESDFGPLVGADSVSENFDTVSLGSLQMPSGFML-TKDQERAIK--AMTP 481
Cdd:TIGR02168 595 KNIEGFLGVAKDLVKFDPKL-----------RKALSYLLGGVLVVDDLDNALELAKKLRPGYRIvTLDGDLVRPggVITG 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 482 EQEETASLLSSVTQGMESAyvspsgyrlvsETEWNLLQKEVHNAgnklgrrcdmcsnyEKQLQGIQIQEAETRDQVKKLQ 561
Cdd:TIGR02168 664 GSAKTNSSILERRREIEEL-----------EEKIEELEEKIAEL--------------EKALAELRKELEELEEELEQLR 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 562 LMLRQANDQLEKTMKEKQELEDFLKQSAEDSSHQISALVLRAQASEVLLEELQQSFSQAKRdVQEQMAVLMQSREQVSEE 641
Cdd:TIGR02168 719 KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE-AEAEIEELEAQIEQLKEE 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 642 LVRLQKDNDSLQGKHSLhvslqlaedfiLPDTVEVLRELVLKYRENIVHVRTAADHME---EKLKAEILFLKEQIQAEQC 718
Cdd:TIGR02168 798 LKALREALDELRAELTL-----------LNEEAANLRERLESLERRIAATERRLEDLEeqiEELSEDIESLAAEIEELEE 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 719 LKENLEETLqleiencKEEIASISSLKAELERIKVEKGQLESTLREKSQQlesLQEMKVNLEEQLKKETAAKATVEQLMF 798
Cdd:TIGR02168 867 LIEELESEL-------EALLNERASLEEALALLRSELEELSEELRELESK---RSELRRELEELREKLAQLELRLEGLEV 936
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 238231439 799 EEKNKAQRL----QTELDVSEQVQRDFVKLSQTLQVQLERIRQA 838
Cdd:TIGR02168 937 RIDNLQERLseeySLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
14-330 |
2.24e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 2.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 14 LQQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKELYL---AKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKA 90
Cdd:TIGR02168 689 LEEKIAELEKALAELRKELEELEEELEQLRKELEELSRqisALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 91 IATVSENTKQEAIDEVKRQwREEVASLQAIMKETVRDYE--HQFHLRLEQERAQWAQYRESAEREIADLRRRLsegqeeE 168
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEEL-EAQIEQLKEELKALREALDelRAELTLLNEEAANLRERLESLERRIAATERRL------E 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 169 NLENEMKKAQEDAEKLrsvvmpmEKEIAALKDKLTEAEDKIKELEASKvKELNHYLEAEKSCRTDLEMYVAVLNTQKSVL 248
Cdd:TIGR02168 842 DLEEQIEELSEDIESL-------AAEIEELEELIEELESELEALLNER-ASLEEALALLRSELEELSEELRELESKRSEL 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 249 QEDAEKLRKELHEVCHLLEQERQQHNQLKhtwqkanDQFLESQRLLMRDMQRMEIVLTSEQLRQVEELKKKDQEEDEQQR 328
Cdd:TIGR02168 914 RRELEELREKLAQLELRLEGLEVRIDNLQ-------ERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGP 986
|
..
gi 238231439 329 VN 330
Cdd:TIGR02168 987 VN 988
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
13-259 |
9.56e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 9.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 13 SLQQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKELylakEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAia 92
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYEL----LAELARLEQDIARLEERRRELEERLEELEEELAELEE-- 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 93 tvsentKQEAIDEVKRQWREEVASLQAIMKETVRDYEHQFHLRLEQERAQwAQYRESAEREIADLRRRLSEGQEEENLEN 172
Cdd:COG1196 331 ------ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL-AEAEEELEELAEELLEALRAAAELAAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 173 EMKKAQEDAEKLRSVvmpMEKEIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDA 252
Cdd:COG1196 404 ELEEAEEALLERLER---LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
....*..
gi 238231439 253 EKLRKEL 259
Cdd:COG1196 481 ELLEELA 487
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
540-821 |
1.66e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 1.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 540 EKQLQGIQIQEAETRDQVKKLQLMLRQANDQLEkTMKEKQELEDFLKQSAEDSSHQISALVLRAQASEVLLEELQQSFSQ 619
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELE-ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 620 AKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHslhvslqlaedfilpDTVEVLRELVLKYRENIVHVRTAADHME 699
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEELEEAEEEL---------------EEAEAELAEAEEALLEAEAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 700 EKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESLQEMKVNL 779
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 238231439 780 EEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDF 821
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
540-846 |
1.06e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 540 EKQLQGIQIQEAETRDQVKKLQLMLRQANDQLEKTMKEKQELEDFLKQSAEDSSH---QISALVLRAQASEVLLEELQQS 616
Cdd:COG1196 210 EKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAEleaELEELRLELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 617 FSQAKRDV---QEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHvslqlaedfilpdtvevlrelvlkyRENIVHVRT 693
Cdd:COG1196 290 EYELLAELarlEQDIARLEERRRELEERLEELEEELAELEEELEEL-------------------------EEELEELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 694 AADHMEEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESLQ 773
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 238231439 774 EMKVNLEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLERIRA 846
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
551-840 |
2.36e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 2.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 551 AETRDQVKKLQLMLRQANDQLEKTMKEKQELEDFLKQSAEDSSHQISALVLRAQASEVLLEELQQSFSQAKRdVQEQMAV 630
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEE-ELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 631 LMQSREQVSEELVRLQK----------DNDSLQGK---HSLHVSLQLAEDFI--LPDTVEVLRELVLKYRENIVHVRTAA 695
Cdd:TIGR02169 259 EISELEKRLEEIEQLLEelnkkikdlgEEEQLRVKekiGELEAEIASLERSIaeKERELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 696 DHMEEKLKAEILfLKEQIQAEQCLKENLEETLQLEIENCKEEIAS----ISSLKAELERIKVEKGQLESTLREKSQQLES 771
Cdd:TIGR02169 339 EELEREIEEERK-RRDKLTEEYAELKEELEDLRAELEEVDKEFAEtrdeLKDYREKLEKLKREINELKRELDRLQEELQR 417
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 238231439 772 LQEMKVNLEEQLK----KETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADS 840
Cdd:TIGR02169 418 LSEELADLNAAIAgieaKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
13-322 |
5.19e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 5.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 13 SLQQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKELYLAKEEDLKRQNAVLQ---AAQDDLGHLRTQLWEAQAEMENIK 89
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQeeeKLKERLEELEEDLSSLEQEIENVK 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 90 AiatvsentKQEAIDEVKRQWREEVASLQAIMKETVRDYEHQFHLRLEQERAQWAQYRESAEREIADLRRRL-SEGQEEE 168
Cdd:TIGR02169 758 S--------ELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLnRLTLEKE 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 169 NLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEAsKVKELNHYLEAEKSCRTDLEmyvavlnTQKSVL 248
Cdd:TIGR02169 830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEA-ALRDLESRLGDLKKERDELE-------AQLREL 901
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 238231439 249 QEDAEKLRKElhevchlLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQRMEIVLTSEQLrqVEELKKKDQE 322
Cdd:TIGR02169 902 ERKIEELEAQ-------IEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV--QAELQRVEEE 966
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
135-343 |
5.45e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 5.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 135 RLEQERAQWAQYRESAEREIADLRRRLSEGQEE-ENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELE 213
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLElEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 214 ASKVKELNHYLEAEKScrtdlemyVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRL 293
Cdd:COG1196 323 EELAELEEELEELEEE--------LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 238231439 294 LMRDMQRMEIVLTSEQLRQVEELKKKDQEEDEQQRVNKRKDNKKTDTEEE 343
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
14-266 |
1.89e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 14 LQQRVAELEKInaefLRAQQQLEQEFNQKRAKFKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIAT 93
Cdd:COG1196 293 LLAELARLEQD----IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 94 VSENTKQEAIDEVKRQWREEVASLQAIMKETvrdyehqfhLRLEQERAQWAQYRESAEREIADLRRRLSEGQEEENLENE 173
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELA---------AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 174 MKKAQEDAEKLRSVVmpmEKEIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAE 253
Cdd:COG1196 440 EEEALEEAAEEEAEL---EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
250
....*....|...
gi 238231439 254 KLRKELHEVCHLL 266
Cdd:COG1196 517 AGLRGLAGAVAVL 529
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
14-316 |
2.15e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 2.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 14 LQQRVAELEKINAEFLRAQQQLEQ----EFNQKRAKFKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIK 89
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEaeleELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 90 AIATVSENTKQEA---IDEVKRQWREEVASLQAImKETVRDYEHQFHLRLEQERAQWAQYRESAEREIADLRRRLSEGQE 166
Cdd:COG1196 302 QDIARLEERRRELeerLEELEEELAELEEELEEL-EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 167 EENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKS 246
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 247 VLQEDAEKLRKElhevchllEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQRMEIVLTSEQLRQVEEL 316
Cdd:COG1196 461 LLELLAELLEEA--------ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGL 522
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
48-343 |
2.34e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 48 ELYLAKEEDLKRQNAVLQAAQDDlgHLRTQLWEAQAEMENIKAiatvsentKQEAIDEVKRQWREEVASLQAIMKEtvrd 127
Cdd:COG1196 213 ERYRELKEELKELEAELLLLKLR--ELEAELEELEAELEELEA--------ELEELEAELAELEAELEELRLELEE---- 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 128 yehqfhLRLEQERAQwAQYRESAEREIADLRRRLSEGQEEENLENEMKKAQEDAEKLrsvvmpmEKEIAALKDKLTEAED 207
Cdd:COG1196 279 ------LELELEEAQ-AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAEL-------EEELEELEEELEELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 208 KIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQlkhtwQKANDQF 287
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL-----LERLERL 419
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 238231439 288 LESQRLLMRDMQRMEIVLTSEQLRQVEELKKKDQEEDEQQRVNKRKDNKKTDTEEE 343
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
699-847 |
1.60e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 699 EEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESLQEMKVN 778
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 238231439 779 LEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLERIRAI 847
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-346 |
1.87e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 1.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 15 QQRVAELEKINAEFLRAQQQLEQEFNQKRaKFKELYLAKEEDLKRQNAVLQAAQDdlghlRTQLWEAQAEMENIKAIATV 94
Cdd:PTZ00121 1455 EAKKAEEAKKKAEEAKKADEAKKKAEEAK-KADEAKKKAEEAKKKADEAKKAAEA-----KKKADEAKKAEEAKKADEAK 1528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 95 SENTKQEAiDEVKRQwrEEVASLQAIMKETvrdyehqfHLRLEQERAQWAQYRESAEREIADLRRRLSEGQEEENLENEM 174
Cdd:PTZ00121 1529 KAEEAKKA-DEAKKA--EEKKKADELKKAE--------ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEV 1597
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 175 KKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVavlntQKSVLQEDAEK 254
Cdd:PTZ00121 1598 MKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI-----KAAEEAKKAEE 1672
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 255 LRKELHEVCHLLEQERQQHNQLKHTWQKANdQFLESQRLLMRDMQRMEIVLTSEQLR--QVEELKKKDQEEdeqqrvNKR 332
Cdd:PTZ00121 1673 DKKKAEEAKKAEEDEKKAAEALKKEAEEAK-KAEELKKKEAEEKKKAEELKKAEEENkiKAEEAKKEAEED------KKK 1745
|
330
....*....|....
gi 238231439 333 KDNKKTDTEEEVKI 346
Cdd:PTZ00121 1746 AEEAKKDEEEKKKI 1759
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
20-849 |
2.17e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 20 ELEKINAEFLRAQQQLEQEFNQKRAKFKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTK 99
Cdd:pfam02463 184 NLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 100 QEAIDEVKRQWREEVASLQAImketvrdyehqfhlrlEQERAQWAQYRESAEREIADLRRRLSEGQEE-ENLENEMKKAQ 178
Cdd:pfam02463 264 EEKLAQVLKENKEEEKEKKLQ----------------EEELKLLAKEEEELKSELLKLERRKVDDEEKlKESEKEKKKAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 179 EDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMyvavLNTQKSVLQEDAEKLRKE 258
Cdd:pfam02463 328 KELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESER----LSSAAKLKEEELELKSEE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 259 LHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLmrDMQRMEIVLTSEQLRQVEELKKKDQEEDEQQRVNKRKDNKKT 338
Cdd:pfam02463 404 EKEAQLLLELARQLEDLLKEEKKEELEILEEEEESI--ELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVK 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 339 DTEEEVKIpvVCALTQEESSTPLSNEEEHLDSTHGSVHSLDADLMLPSGDPFSKSDNDMFKDGLRRAQSTDSLGTSSSLQ 418
Cdd:pfam02463 482 LQEQLELL--LSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADE 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 419 SKALGYNYKAKSAGNLDESDFGPLVGADSVSENFDTVSLGSLQMPSGFMLTKDQERAIKAMTPEQEETASLLSSVTQGME 498
Cdd:pfam02463 560 VEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKE 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 499 SAYVSPSGYRLVSETEWNLLQKEVHNAGNKLGRRCDMCSNYEKQLQGIQIQEAETRDQVKKLQLMLRQANDQLEKTMKEK 578
Cdd:pfam02463 640 SAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEA 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 579 QELEDFLKQSAEDSSHQIsaLVLRAQASEVLLEELQQSFSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSL 658
Cdd:pfam02463 720 EELLADRVQEAQDKINEE--LKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLK 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 659 HVSLQLAEdfilpdTVEVLRELVLKYRENIVHVRTAADHMEEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEI 738
Cdd:pfam02463 798 AQEEELRA------LEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQE 871
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 739 ASISSLKAELERIKVEKGQLESTLREKSQQLESLQEMKVNLEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQ 818
Cdd:pfam02463 872 LLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKE 951
|
810 820 830
....*....|....*....|....*....|.
gi 238231439 819 RDFVKLSQTLQVQLERIRQADSLERIRAILN 849
Cdd:pfam02463 952 ENNKEEEEERNKRLLLAKEELGKVNLMAIEE 982
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
551-792 |
2.49e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 551 AETRDQVKKLQLMLRQANDQLEKTMKEKQELEDFLKQSAEDSSHQISALVLRAQASEVLLEELQQSFSQAKRDVQEQMAV 630
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 631 LMQSREQVSEELVRLQKdndslQGKHSLHVSLQLAEDFilpdtVEVLRELVLkYRENIVHVRTAADHMEEKLkAEILFLK 710
Cdd:COG4942 99 LEAQKEELAELLRALYR-----LGRQPPLALLLSPEDF-----LDAVRRLQY-LKYLAPARREQAEELRADL-AELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 711 EQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERikvEKGQLESTLREKSQQLESLQEMKVNLEEQLKKETAAK 790
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEK---ELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
..
gi 238231439 791 AT 792
Cdd:COG4942 244 PA 245
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
55-259 |
8.84e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 8.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 55 EDLKRQNAVLQAAQDdLGHLRTQLWEAQAEMENIKAIATVSEN-TKQEAIDEVKRQWREEVAslqaimketvrdyehqfh 133
Cdd:COG4913 245 EDAREQIELLEPIRE-LAERYAAARERLAELEYLRAALRLWFAqRRLELLEAELEELRAELA------------------ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 134 lRLEQERAQWAQYRESAEREIADLRRRLSE--GQEEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKE 211
Cdd:COG4913 306 -RLEAELERLEARLDALREELDELEAQIRGngGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 238231439 212 LeaskVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKEL 259
Cdd:COG4913 385 L----RAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEI 428
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
551-784 |
9.30e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 9.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 551 AETRDQVKKLQLMLRQANDQLEKTMKEKQELE---DFLKQSAEDSSHQISALVLRAQasevLLEELQQSFSQAKRDVQEQ 627
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIEnrlDELSQELSDASRKIGEIEKEIE----QLEQEEEKLKERLEELEED 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 628 MAVLMQSREQVSEELVRLQKDNDSLQGK-HSLHVSLQLAEDFILPDTVEVLRELVLKYRENIVHVRTAADHMEEKLKA-- 704
Cdd:TIGR02169 746 LSSLEQEIENVKSELKELEARIEELEEDlHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRlt 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 705 ---------------EILFLKEQIQAEQCLKENLE---ETLQLEIENCKEEI-----------ASISSLKAELERIKVEK 755
Cdd:TIGR02169 826 lekeylekeiqelqeQRIDLKEQIKSIEKEIENLNgkkEELEEELEELEAALrdlesrlgdlkKERDELEAQLRELERKI 905
|
250 260
....*....|....*....|....*....
gi 238231439 756 GQLESTLREKSQQLESLQEMKVNLEEQLK 784
Cdd:TIGR02169 906 EELEAQIEKKRKRLSELKAKLEALEEELS 934
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
22-343 |
1.69e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 22 EKINAEFLRAQQQLEQEFNQKRAKfkelYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQE 101
Cdd:PTZ00121 1532 EAKKADEAKKAEEKKKADELKKAE----ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKM 1607
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 102 AIDEVKRQWREEVASLQAIMKETVRDYEHQFHLRLEQERAQWAQYRESAEREIADLRRRLSEGQEEENLENEMKKAQEDA 181
Cdd:PTZ00121 1608 KAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 182 EKLRSVVMPMEKE---IAALKDKLTE----AEDKIKELEASKVKELNHYLEAEKSCRTDLEMYV-----AVLNTQKSVLQ 249
Cdd:PTZ00121 1688 KKAAEALKKEAEEakkAEELKKKEAEekkkAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKdeeekKKIAHLKKEEE 1767
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 250 EDAEKLRKELHEVCH--LLEQERQQHNQLKHTWQKANDQFLESQR------LLMRDMQRMEIVLTSEQL----RQVEELK 317
Cdd:PTZ00121 1768 KKAEEIRKEKEAVIEeeLDEEDEKRRMEVDKKIKDIFDNFANIIEggkegnLVINDSKEMEDSAIKEVAdsknMQLEEAD 1847
|
330 340
....*....|....*....|....*.
gi 238231439 318 KKDQEEDEQQRVNKRKDNKKTDTEEE 343
Cdd:PTZ00121 1848 AFEKHKFNKNNENGEDGNKEADFNKE 1873
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-356 |
2.19e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 15 QQRVAELEKINAEFLRAQQQLEQEFNQKRaKFKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIAtv 94
Cdd:PTZ00121 1416 AKKKADEAKKKAEEKKKADEAKKKAEEAK-KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA-- 1492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 95 sENTKQEAiDEVKRQWREEVASLQAIMKETVRDYEHqfhLRLEQERAQWAQYRESAEREIADLRRRLSEGQ--EEENLEN 172
Cdd:PTZ00121 1493 -EEAKKKA-DEAKKAAEAKKKADEAKKAEEAKKADE---AKKAEEAKKADEAKKAEEKKKADELKKAEELKkaEEKKKAE 1567
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 173 EMKKAQED---AEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKScRTDLEMYVAVLNTQKSVLQ 249
Cdd:PTZ00121 1568 EAKKAEEDknmALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK-AEEEKKKVEQLKKKEAEEK 1646
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 250 EDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRllmrdmqrmeivlTSEQLRQVEELKKKDQEEDEQQRV 329
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK-------------AAEALKKEAEEAKKAEELKKKEAE 1713
|
330 340
....*....|....*....|....*..
gi 238231439 330 NKRKDNKKTDTEEEVKIPVVCALTQEE 356
Cdd:PTZ00121 1714 EKKKAEELKKAEEENKIKAEEAKKEAE 1740
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
151-280 |
3.07e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.46 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 151 EREIADLRRRLSEGQEEENLENEMKKAQEDAE--KLRSVVMPMEKEIAALKDKLTEAEDKIKELEAsKVKELNhyLEAEK 228
Cdd:COG2433 383 EELIEKELPEEEPEAEREKEHEERELTEEEEEirRLEEQVERLEAEVEELEAELEEKDERIERLER-ELSEAR--SEERR 459
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 238231439 229 SCRTDLEMyvavlntqkSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTW 280
Cdd:COG2433 460 EIRKDREI---------SRLDREIERLERELEEERERIEELKRKLERLKELW 502
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
87-275 |
3.87e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 3.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 87 NIKAIATVSEntKQEAIDEVKRQWREEVASLQAIMKETVRdyehQFHLRLEQERAQWAQYR-ESAEREIADL---RRRLS 162
Cdd:COG4913 608 NRAKLAALEA--ELAELEEELAEAEERLEALEAELDALQE----RREALQRLAEYSWDEIDvASAEREIAELeaeLERLD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 163 EGQEE-ENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELE-----ASKVKELNHYLEAEKSCRTDLEM 236
Cdd:COG4913 682 ASSDDlAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQdrleaAEDLARLELRALLEERFAAALGD 761
|
170 180 190
....*....|....*....|....*....|....*....
gi 238231439 237 yvAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQ 275
Cdd:COG4913 762 --AVERELRENLEERIDALRARLNRAEEELERAMRAFNR 798
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
693-858 |
3.98e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 3.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 693 TAADHMEEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESL 772
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 773 QEMKVNLEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLERIRAILNDTK 852
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
....*.
gi 238231439 853 LTDINQ 858
Cdd:TIGR02168 409 LERLED 414
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
75-223 |
4.08e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 4.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 75 RTQLWEAQAEMENIKAIATVS-ENTKQEAIDEVKRQWreevaslqaimketvrdyehqFHLRLEQERaqwaQYREsAERE 153
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKKEaEAIKKEALLEAKEEI---------------------HKLRNEFEK----ELRE-RRNE 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 154 IADLRRRLSegQEEENLENEMkkaqEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHY 223
Cdd:PRK12704 84 LQKLEKRLL--QKEENLDRKL----ELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
15-160 |
4.29e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 4.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 15 QQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKElylAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIAT- 93
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDA---LREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRAr 363
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 238231439 94 ---------VSENTKQEAIDEVKRQWREEVASLQAImKETVRDYEHQFHLRLEQERAQwaqyRESAEREIADLRRR 160
Cdd:COG4913 364 leallaalgLPLPASAEEFAALRAEAAALLEALEEE-LEALEEALAEAEAALRDLRRE----LRELEAEIASLERR 434
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
4-214 |
4.93e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 4.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 4 PGPAPQPDVSLQQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKELYLAkEEDLKRQNAVLQAAQDDLGHLRTQLWEAQA 83
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL-ERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 84 EmenIKAIATVSENTKQEAIDEVKRQWR----------------EEVASLQAIMKETVRDYEHQFHlRLEQERAQWAQYR 147
Cdd:COG4942 91 E---IAELRAELEAQKEELAELLRALYRlgrqpplalllspedfLDAVRRLQYLKYLAPARREQAE-ELRADLAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 238231439 148 ESAEREIADLRRRLSEGQEE-ENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEA 214
Cdd:COG4942 167 AELEAERAELEALLAELEEErAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
100-815 |
5.55e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 5.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 100 QEAIDEVKRQWREEVASLQAIMKETVRDYEHQ-FHLRLEQERAQWAQYRESAERE-IADLRRRlsEGQEEENLENE---- 173
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQkFYLRQSVIDLQTKLQEMQMERDaMADIRRR--ESQSQEDLRNQlqnt 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 174 --------------MKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAED----KIKELEASKVKELNHYLEAEKSCRTDLE 235
Cdd:pfam15921 151 vheleaakclkedmLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEasgkKIYEHDSMSTMHFRSLGSAISKILRELD 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 236 MYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQH-NQL-------------KHTWQKANDQFLESQRLLMRDMQRM 301
Cdd:pfam15921 231 TEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRiEQLiseheveitglteKASSARSQANSIQSQLEIIQEQARN 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 302 EivlTSEQLRQVEELKKKDQEEDEQQRVNKRKDNKKTDTEEEVKIPVVCALTQ-----EESSTPLSNEEEHLDSTHGSVH 376
Cdd:pfam15921 311 Q---NSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEarterDQFSQESGNLDDQLQKLLADLH 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 377 SLDADLMLPSGDPFSKSDNDMFK----DGLRRAQSTDSLGTSsslQSKALGYNYKAKSAGNLDESdfgpLVGADSVSENF 452
Cdd:pfam15921 388 KREKELSLEKEQNKRLWDRDTGNsitiDHLRRELDDRNMEVQ---RLEALLKAMKSECQGQMERQ----MAAIQGKNESL 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 453 DTVSLGSLQMPSGFMLTKD--QERAIKAMTPEQ-EETASLLSSVTQGMESAYVSPSGYRLVSETEWNLLQKEVHNAGNKl 529
Cdd:pfam15921 461 EKVSSLTAQLESTKEMLRKvvEELTAKKMTLESsERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE- 539
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 530 grrCDMCSNYEKQLQGIQIQEAET-------RDQVKKLQLMLRQ----------ANDQLEKTMKEKQ-ELEDF--LKQSA 589
Cdd:pfam15921 540 ---GDHLRNVQTECEALKLQMAEKdkvieilRQQIENMTQLVGQhgrtagamqvEKAQLEKEINDRRlELQEFkiLKDKK 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 590 EDSSHQISALVLRAQASEVLLEELQQSFSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQ------------GKHS 657
Cdd:pfam15921 617 DAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKrnfrnkseemetTTNK 696
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 658 LHVSLQLAEDfilpdTVEVLRELVLKYRENIVHVRTAADHMEEKLKAEilflKEQIQAEQCLKENLEETL---QLEIENC 734
Cdd:pfam15921 697 LKMQLKSAQS-----ELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAK----RGQIDALQSKIQFLEEAMtnaNKEKHFL 767
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 735 KEEIasiSSLKAELERIKVEKGQLESTLREKSQQLESLQEMKVNLEEQLKKETAAKATVEQLMFEEKNKAQR--LQTELD 812
Cdd:pfam15921 768 KEEK---NKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRlkLQHTLD 844
|
...
gi 238231439 813 VSE 815
Cdd:pfam15921 845 VKE 847
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
168-453 |
6.43e-04 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 43.50 E-value: 6.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 168 ENLENEMKKAQEDAEKLRSvvmpmeKEIAAL-KDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDlemyvaVLNTQKS 246
Cdd:PTZ00108 1105 EKLNAELEKKEKELEKLKN------TTPKDMwLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGK------ASKLRKP 1172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 247 VLQEDAEKLR-KELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQRMEIVLTSEQLRQVEELKKKDQEEDE 325
Cdd:PTZ00108 1173 KLKKKEKKKKkSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSK 1252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 326 QQRVNKRKDNKKTDTEEEVKIPV----VCALTQEESSTPLSNEEEHLDSTHGSVHSLDADLMLPSGDPFSKSdNDMFKDG 401
Cdd:PTZ00108 1253 SSEDNDEFSSDDLSKEGKPKNAPkrvsAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKK-KKSEKKT 1331
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 238231439 402 LRRAQSTDSLGTSSSLQSKALGYNYKAKSAGNLDESDFGPLVGADSVSENFD 453
Cdd:PTZ00108 1332 ARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDED 1383
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
675-858 |
6.50e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 6.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 675 EVLRELVLKYRENIVHVRTAADHMEEKLKAEIlflkEQIQAEQCLKENLEETLQLEIENCKEEI----ASISSLKAELER 750
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAEL----EELEAELAELEAELEELRLELEELELELeeaqAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 751 IKVEKGQLESTLREKSQQLESLQEMKVNLEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQV 830
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
170 180
....*....|....*....|....*...
gi 238231439 831 QLERIRQADSLERIRAILNDTKLTDINQ 858
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEE 407
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
13-299 |
6.75e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 6.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 13 SLQQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKELYLAKEEDLKRQNAvLQAAQDDLghlrtqlweaqaEMENIKAIA 92
Cdd:pfam15921 573 NMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRE-LEARVSDL------------ELEKVKLVN 639
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 93 TVSENTKQ-EAIDEVKRQWREEVASLQAIMKETVRDYehqfhlrlEQERAQWAQYRESAEREIADLRRRLSEGQEE-ENL 170
Cdd:pfam15921 640 AGSERLRAvKDIKQERDQLLNEVKTSRNELNSLSEDY--------EVLKRNFRNKSEEMETTTNKLKMQLKSAQSElEQT 711
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 171 ENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEA--SKVKELNHYLEAEKScrtDLEMYVAVLNTQKSVL 248
Cdd:pfam15921 712 RNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEamTNANKEKHFLKEEKN---KLSQELSTVATEKNKM 788
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 238231439 249 QEDAEKLRKELHEVchlleqeRQQHNQLKHTWQKANDQFLESQRLLMRDMQ 299
Cdd:pfam15921 789 AGELEVLRSQERRL-------KEKVANMEVALDKASLQFAECQDIIQRQEQ 832
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
19-123 |
6.84e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 6.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 19 AELEkINAEFLRAQQQLEQEFNQKRAKF---------KELYLAKE-EDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENI 88
Cdd:PRK12704 58 ALLE-AKEEIHKLRNEFEKELRERRNELqklekrllqKEENLDRKlELLEKREEELEKKEKELEQKQQELEKKEEELEEL 136
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 238231439 89 KA--------IATVS-ENTKQEAIDEVKRQWREEVASL-QAIMKE 123
Cdd:PRK12704 137 IEeqlqelerISGLTaEEAKEILLEKVEEEARHEAAVLiKEIEEE 181
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
692-859 |
9.13e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 9.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 692 RTAADHMEEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLES 771
Cdd:COG1196 255 LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 772 LQEMKVNLEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVK----LSQTLQVQLERIRQADSLERIRAI 847
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEelleALRAAAELAAQLEELEEAEEALLE 414
|
170
....*....|..
gi 238231439 848 LNDTKLTDINQL 859
Cdd:COG1196 415 RLERLEEELEEL 426
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
138-342 |
9.14e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 9.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 138 QERAQWAQYRESAEREIADLRRRLSEGQ-EEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASK 216
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKkEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 217 VKELNHYLE-AEKSCRTDLEMYVAVLntqksVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQflesQRLLM 295
Cdd:COG4942 100 EAQKEELAElLRALYRLGRQPPLALL-----LSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL----RAELE 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 238231439 296 RDMQRMEIVLTSEQLRQVEELKKKDQEEDEQQRVNKRKDNKKTDTEE 342
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAE 217
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
26-219 |
9.90e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 9.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 26 AEFLRA--QQQLEQEFNQ---KRAKFKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENtKQ 100
Cdd:COG4717 40 LAFIRAmlLERLEKEADElfkPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELRE-EL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 101 EAIDEVKRQWR--EEVASLQAIMKETVRDYEHqfHLRLEQERAQWAQYRESAEREIADLRRRLSEGQEEENL--ENEMKK 176
Cdd:COG4717 119 EKLEKLLQLLPlyQELEALEAELAELPERLEE--LEERLEELRELEEELEELEAELAELQEELEELLEQLSLatEEELQD 196
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 238231439 177 AQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKE 219
Cdd:COG4717 197 LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
22-342 |
1.02e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 22 EKINAEFLRAQQQLEQEFNQKRAK--FKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTK 99
Cdd:PTZ00121 1102 EAKKTETGKAEEARKAEEAKKKAEdaRKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAA 1181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 100 QEAIdEVKRQwrEEVASLQAIMK-ETVRDYEHQfhLRLEQERAQWAQYRESAEREIADLRRRLSEG---QEEENLENEMK 175
Cdd:PTZ00121 1182 RKAE-EVRKA--EELRKAEDARKaEAARKAEEE--RKAEEARKAEDAKKAEAVKKAEEAKKDAEEAkkaEEERNNEEIRK 1256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 176 KAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKScrtdlemyvAVLNTQKSVLQEDAEKL 255
Cdd:PTZ00121 1257 FEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK---------AEEAKKADEAKKKAEEA 1327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 256 RKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQRmeivlTSEQLRQVEELKKKDQEEDEQQRVNKRKDN 335
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK-----KEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402
|
....*..
gi 238231439 336 KKTDTEE 342
Cdd:PTZ00121 1403 DKKKADE 1409
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-335 |
1.13e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 15 QQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKELYLAKEEDlKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATV 94
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED-KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKK 1710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 95 SENTKQEAiDEVKRQWREEVASLQAIMKETVRDYEHQFHLRLEQERAQWAQYRESAEREIADLRRRLSEGQEEENLENEM 174
Cdd:PTZ00121 1711 EAEEKKKA-EELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED 1789
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 175 KKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKElnhyleaekscrtdlemyvaVLNTQKSVLQEDAEK 254
Cdd:PTZ00121 1790 EKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKE--------------------VADSKNMQLEEADAF 1849
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 255 LRKELHEVCHLLEQERQQHNQLKHTWQKAND--QFLESQRLLMRDMQRMEIVLTSEQLR-----------QVEELKKKDQ 321
Cdd:PTZ00121 1850 EKHKFNKNNENGEDGNKEADFNKEKDLKEDDeeEIEEADEIEKIDKDDIEREIPNNNMAgknndiiddklDKDEYIKRDA 1929
|
330
....*....|....
gi 238231439 322 EEDEQQRVNKRKDN 335
Cdd:PTZ00121 1930 EETREEIIKISKKD 1943
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
703-835 |
1.16e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 42.74 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 703 KAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIA-------SISSLKAELERIKVEKGQLEStlreksqQLESLQEM 775
Cdd:pfam05911 680 TEENKRLKEEFEQLKSEKENLEVELASCTENLESTKSqlqeseqLIAELRSELASLKESNSLAET-------QLKCMAES 752
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 776 KVNLEEQLkkeTAAKATVEQLmfeeKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERI 835
Cdd:pfam05911 753 YEDLETRL---TELEAELNEL----RQKFEALEVELEEEKNCHEELEAKCLELQEQLERN 805
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
554-774 |
1.26e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.58 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 554 RDQVKKLQLMLRQANDQLEKTMKEKQELEDFL--------KQSAEDSSHQISALVLRAQASEVLLEELQQSFSQAK---- 621
Cdd:PLN02939 48 KKRGKNIAPKQRSSNSKLQSNTDENGQLENTSlrtvmelpQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEqlsd 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 622 ----------RDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLhVSLQLAEDFILPDT-------VEVLRELVLKY 684
Cdd:PLN02939 128 fqledlvgmiQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINI-LEMRLSETDARIKLaaqekihVEILEEQLEKL 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 685 RENIVHVRTAADHMEEKLKAEILFLKEqiqaeqclkENLeeTLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLRE 764
Cdd:PLN02939 207 RNELLIRGATEGLCVHSLSKELDVLKE---------ENM--LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRE 275
|
250
....*....|
gi 238231439 765 KSQQLESLQE 774
Cdd:PLN02939 276 LESKFIVAQE 285
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
598-846 |
2.20e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 598 ALVLRAQASEVLLEELQQSFSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLhvslqlaedfiLPDTVEVL 677
Cdd:COG4942 6 LLALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA-----------LARRIRAL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 678 RELVLKYRENIVHVRTAADHMEEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQ 757
Cdd:COG4942 75 EQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 758 LESTLREKSQQLESLQEMKVNLEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQ 837
Cdd:COG4942 155 LRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
....*....
gi 238231439 838 ADSLERIRA 846
Cdd:COG4942 235 EAAAAAERT 243
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
471-836 |
2.25e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 471 DQERAIKAMTPEQEETASLLSSVTQGMESAYVSPSGYRLVSETEWNLLQKEVHNAGNKLGRRCDMCSNYEKQLQGIQIQE 550
Cdd:pfam15921 321 DLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQN 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 551 AETRDQVKKLQLMLRQANDQLEKTMKEKQELEDFLKQSAEDSSHQISALVLRAQASEVLLEELQQSFSQakrdVQEQMAV 630
Cdd:pfam15921 401 KRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQ----LESTKEM 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 631 LMQSREQVSEELVRLQKDNDSLQgkhSLHVSLQLAEDFILPDTVEV--LRELVLKYRENIVHVRTAADHM---EEKLKAE 705
Cdd:pfam15921 477 LRKVVEELTAKKMTLESSERTVS---DLTASLQEKERAIEATNAEItkLRSRVDLKLQELQHLKNEGDHLrnvQTECEAL 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 706 ILFLKEQIQAEQCLKENLEETLQL-----------EIENCKEEiASISSLKAELERIKVEKGQLESTLREKSQQLESLQE 774
Cdd:pfam15921 554 KLQMAEKDKVIEILRQQIENMTQLvgqhgrtagamQVEKAQLE-KEINDRRLELQEFKILKDKKDAKIRELEARVSDLEL 632
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 238231439 775 MKVNL----EEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIR 836
Cdd:pfam15921 633 EKVKLvnagSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLK 698
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
133-343 |
2.29e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 133 HLRLEQERAQWAQYrESAEREiadlrrRLSEGQEEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLteAEDKIKEL 212
Cdd:pfam17380 280 HQKAVSERQQQEKF-EKMEQE------RLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERM--AMEREREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 213 EASKVKELNHYLEAEKSCRTDLEM-YVAVLNTQKSVLQEDAEKLRKELHEV--CHLLEQERQQHNQLKHT------WQKA 283
Cdd:pfam17380 351 ERIRQEERKRELERIRQEEIAMEIsRMRELERLQMERQQKNERVRQELEAArkVKILEEERQRKIQQQKVemeqirAEQE 430
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 238231439 284 NDQFLESQRLLMRDMQRMEIVLTSEQLR--QVEELKKKDQEEDEQQRVNKRKDNKKTDTEEE 343
Cdd:pfam17380 431 EARQREVRRLEEERAREMERVRLEEQERqqQVERLRQQEEERKRKKLELEKEKRDRKRAEEQ 492
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
700-854 |
2.34e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 700 EKLKAEILFLKEQI-QAEQCLKENLEETLQLEIENCK------EEIASISSLKAELERIKVEKGQLESTLREKSQQLESL 772
Cdd:TIGR02168 680 EELEEKIEELEEKIaELEKALAELRKELEELEEELEQlrkeleELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 773 QEMKVNLEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKlsqtlQVQLERIRQADSLERIRAILNDTK 852
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA-----ELTLLNEEAANLRERLESLERRIA 834
|
..
gi 238231439 853 LT 854
Cdd:TIGR02168 835 AT 836
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
543-861 |
3.00e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 3.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 543 LQGIQIQEAETRDQVKKLQLMLRQANDQLEKTMKEKQELEDFLKQSAEdsshqisalvLRAQASEVL-LEELQQSFSQAK 621
Cdd:PRK03918 240 IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE----------LKEKAEEYIkLSEFYEEYLDEL 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 622 RDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHVSLQlaedfilpDTVEVLRELVLKYREnivhVRTAADHMEEK 701
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELE--------KRLEELEERHELYEE----AKAKKEELERL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 702 LKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIAS----ISSLKAELERIKVEKGQLESTLREksqqleslqemkv 777
Cdd:PRK03918 378 KKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGElkkeIKELKKAIEELKKAKGKCPVCGRE------------- 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 778 nLEEQLKKETAAKATVEQlmfeeKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLERIRAILNDTKLTDIN 857
Cdd:PRK03918 445 -LTEEHRKELLEEYTAEL-----KRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLE 518
|
....
gi 238231439 858 QLPE 861
Cdd:PRK03918 519 ELEK 522
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
86-227 |
3.60e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 86 ENIKAIATVSENTKQEAIDEVKRQWREEVASLQAIMKETVRDYEhqfhLRLEQERAqwaqYRESAEREIADLRRRLSEGQ 165
Cdd:COG2433 376 LSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLE----EQVERLEA----EVEELEAELEEKDERIERLE 447
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 238231439 166 EEenLENEMKKAQEDAEKLRSVVMpMEKEIAALKDKLTEAEDKIKELEaSKVKELNHYLEAE 227
Cdd:COG2433 448 RE--LSEARSEERREIRKDREISR-LDREIERLERELEEERERIEELK-RKLERLKELWKLE 505
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
14-185 |
3.79e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 14 LQQRVAELEKINAEFLRAQQQL---EQEFNQKRAKFKELY-----LAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEM 85
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELeelEEELEELEAELEELReelekLEKLLQLLPLYQELEALEAELAELPERLEELEERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 86 ENIKaiatvsenTKQEAIDEVKRQWREEVASLQAIMKETVRDYEHQFHlRLEQERAQWAQYRESAEREIADLRRRLSEGQ 165
Cdd:COG4717 156 EELR--------ELEEELEELEAELAELQEELEELLEQLSLATEEELQ-DLAEELEELQQRLAELEEELEEAQEELEELE 226
|
170 180
....*....|....*....|
gi 238231439 166 EEENLENEMKKAQEDAEKLR 185
Cdd:COG4717 227 EELEQLENELEAAALEERLK 246
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-356 |
4.77e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 4.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 15 QQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIAtv 94
Cdd:PTZ00121 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKA-- 1453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 95 SENTKQEAIDEvKRQWREEVASLQAIMKETVRDYEHQFHLRLEQERAQWAQYRESAEREIADLRRrlsegQEEENLENEM 174
Cdd:PTZ00121 1454 EEAKKAEEAKK-KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK-----AEEAKKADEA 1527
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 175 KKAQE--DAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHYL--EAEKSCRTDLEMYVAVLNTQKSVLQE 250
Cdd:PTZ00121 1528 KKAEEakKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAlrKAEEAKKAEEARIEEVMKLYEEEKKM 1607
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 251 DAEKLRKElhevchllEQERQQHNQLKHTWQkandqflESQRLLMRDMQRMEIVLTSEQLRQVEELKKKDQEEDEQQRVN 330
Cdd:PTZ00121 1608 KAEEAKKA--------EEAKIKAEELKKAEE-------EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
|
330 340
....*....|....*....|....*.
gi 238231439 331 KRKDNKKTDTEEEVKIPVVCALTQEE 356
Cdd:PTZ00121 1673 DKKKAEEAKKAEEDEKKAAEALKKEA 1698
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
12-826 |
4.83e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.73 E-value: 4.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 12 VSLQQRVAELEKINAEFLRAQQQLEQEFNQKRAKFKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKaI 91
Cdd:pfam02463 229 LDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLE-R 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 92 ATVSENTKQEAIDEVKRQWREEVASLQAIMKETVRDYEHQFHLRLEQERAQWAQYRESAEREIADLRRRLSEGQEEENLE 171
Cdd:pfam02463 308 RKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLS 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 172 NEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKElEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQED 251
Cdd:pfam02463 388 SAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKE-ELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 252 AEKLRKELHEVchLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQRMEIVLTSEQLRQVEELKKKDQEEDEQQRVNK 331
Cdd:pfam02463 467 LKKSEDLLKET--QLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVA 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 332 RKDNKKTDTEEeVKIPVVCALTQEESSTPLSNEEEHLDSTHGSVHSLDADLMLPSGDPFSKSDNDMFKDGLRRAQSTDSL 411
Cdd:pfam02463 545 ISTAVIVEVSA-TADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAK 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 412 GTSSSLQSKALGYNyKAKSAGNLDESDFGPLVGADSVSENFDTVSLgsLQMPSGFMLTKDQERAIKAMTPEQEETASLLS 491
Cdd:pfam02463 624 VVEGILKDTELTKL-KESAKAKESGLRKGVSLEEGLAEKSEVKASL--SELTKELLEIQELQEKAESELAKEEILRRQLE 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 492 SVTQGMESAYVSPSGYRLVSETEWNLLQKEVHNAGNKLGRRCDMCSNYEKQLQGIQIQEAETRDQVKKLQLMLRQANDQL 571
Cdd:pfam02463 701 IKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEER 780
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 572 EKTMKEKQELEDFLKQSAEDSSHQISALVLRAQASEV----LLEELQQSFSQAKRDVQEQMAVLMQSREQVSEELVRLQK 647
Cdd:pfam02463 781 EKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLeeeqLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLE 860
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 648 DNDSLQGKHSLHVSLQLAEDFILPDTVEVLRELVLKYRENIVHVRTAADHMEEKLKAEILFLKEQIQAEQCLKENLEETL 727
Cdd:pfam02463 861 EEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEEL 940
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 728 QLEIENCKEEIAS-ISSLKAELERIKVEKGQLESTLREKSQQLESLQEMKVNLEEQLKKETAAKATVEQLMFEEKnkAQR 806
Cdd:pfam02463 941 LLEEADEKEKEENnKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEET--CQR 1018
|
810 820
....*....|....*....|
gi 238231439 807 LQTELDVSEQVQRDFVKLSQ 826
Cdd:pfam02463 1019 LKEFLELFVSINKGWNKVFF 1038
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
13-225 |
4.86e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 13 SLQQRVAELEKINAEFLRAQQQLEqefnQKRAKFKELYLAKEEdLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIA 92
Cdd:COG4913 672 ELEAELERLDASSDDLAALEEQLE----ELEAELEELEEELDE-LKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 93 TVS-------ENTKQEAIDEVKRQWREEVASLQAIMKETVRDYEHQFHLRLEQERAQWAQYRESAErEIADLRRRLSEgQ 165
Cdd:COG4913 747 LRAlleerfaAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLE-SLPEYLALLDR-L 824
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 238231439 166 EEENL---ENEMKKAQEDAeklrsvvmpMEKEIAALKDKLTEAEDKIKEleasKVKELNHYLE 225
Cdd:COG4913 825 EEDGLpeyEERFKELLNEN---------SIEFVADLLSKLRRAIREIKE----RIDPLNDSLK 874
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
699-852 |
5.56e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.67 E-value: 5.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 699 EEKLKAEILFLKEQIQAEQ---CLKENLEETLQLeienckeeIASISSLKAELERIKVEKGQLESTLREKSQQLESLQEM 775
Cdd:PRK11281 38 EADVQAQLDALNKQKLLEAedkLVQQDLEQTLAL--------LDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 776 KVnleeQLKKETAAKATVEQLMfeeknkaQRLQTELDVSEQVQRDFVKL-SQ--TLQVQLERIRQADS-----LERIRAI 847
Cdd:PRK11281 110 ND----EETRETLSTLSLRQLE-------SRLAQTLDQLQNAQNDLAEYnSQlvSLQTQPERAQAALYansqrLQQIRNL 178
|
....*
gi 238231439 848 LNDTK 852
Cdd:PRK11281 179 LKGGK 183
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
59-345 |
6.20e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 6.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 59 RQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEAIDEVKRQWREEVASLQAIMK--ETVRDYEhqfhlrl 136
Cdd:PTZ00121 1059 KAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKkaEDARKAE------- 1131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 137 EQERAQWAQYRESAEREIADLRRRLSEGQEEENLENEMKKAqEDAEKLRSVVMPMEKEIAalkDKLTEAEDKIKELEASK 216
Cdd:PTZ00121 1132 EARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKA-EDAKKAEAARKAEEVRKA---EELRKAEDARKAEAARK 1207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 217 VKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMR 296
Cdd:PTZ00121 1208 AEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAE 1287
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 238231439 297 DMQRMEIVLTSEQLRQVEELKKKDQEEDEQQRVNKRKDNKKTDTEEEVK 345
Cdd:PTZ00121 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKK 1336
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
540-728 |
7.54e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 540 EKQLQGIQIQEAETRDQVKKLQLMLRQANDQLEKTMKEKQELEDFLKQSAEDSSHQISALVLRAQASEVLLEELQQSFSQ 619
Cdd:COG4942 54 LKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLD 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 620 AKRDVQeQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHVslqlaedfilpDTVEVLRELVLKYRENIVHVRTAADHME 699
Cdd:COG4942 134 AVRRLQ-YLKYLAPARREQAEELRADLAELAALRAELEAER-----------AELEALLAELEEERAALEALKAERQKLL 201
|
170 180
....*....|....*....|....*....
gi 238231439 700 EKLKAEILFLKEQIQAEQCLKENLEETLQ 728
Cdd:COG4942 202 ARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
81-812 |
7.67e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 7.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 81 AQAEMENIKAIATVSE-NTKQEAIDEVKRQWREEVASLQAIMKETVRDYEhqfhlRLEQERAQWAQYR----ESAEREIA 155
Cdd:TIGR02169 152 PVERRKIIDEIAGVAEfDRKKEKALEELEEVEENIERLDLIIDEKRQQLE-----RLRREREKAERYQallkEKREYEGY 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 156 DLRRRLSEGQEE-ENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKEL---EASKVKELNHYLEAE-KSC 230
Cdd:TIGR02169 227 ELLKEKEALERQkEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeEQLRVKEKIGELEAEiASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 231 RT----------DLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQ-------ERQQHNQLKHTWQKANDQFLESQRL 293
Cdd:TIGR02169 307 ERsiaekereleDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKlteeyaeLKEELEDLRAELEEVDKEFAETRDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 294 LMRDMQRMEIV------LTSEQLRQVEELKKKDQE--EDEQQRVNKRKDNKKTDTEEEVKIPVVCALTQEESST------ 359
Cdd:TIGR02169 387 LKDYREKLEKLkreineLKRELDRLQEELQRLSEElaDLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLaadlsk 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 360 ---PLSNEEEHLDSTHGSVHSLDADL--------MLPSGDPFSKSDNDMFKDGLRRAqstdsLGTSSSLQSKALGYNYKA 428
Cdd:TIGR02169 467 yeqELYDLKEEYDRVEKELSKLQRELaeaeaqarASEERVRGGRAVEEVLKASIQGV-----HGTVAQLGSVGERYATAI 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 429 KSAG-------------------------NLDESDFGPLvgadsvSENFDTVSLGSLQMPSGFMltkdqERAIKAMTPEQ 483
Cdd:TIGR02169 542 EVAAgnrlnnvvveddavakeaiellkrrKAGRATFLPL------NKMRDERRDLSILSEDGVI-----GFAVDLVEFDP 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 484 EETASLL-----SSVTQGMESAYVSPSGYRLVSeTEWNLLQKEVHNAGNklgrrcdmcSNYEKQLQGIQIQEaetRDQVK 558
Cdd:TIGR02169 611 KYEPAFKyvfgdTLVVEDIEAARRLMGKYRMVT-LEGELFEKSGAMTGG---------SRAPRGGILFSRSE---PAELQ 677
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 559 KLQLMLRQANDQLEKTMKEKQELE---DFLKQSAEDSSHQISALVLRAQasevLLEELQQSFSQAKRDVQEQMAVLMQSR 635
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIEnrlDELSQELSDASRKIGEIEKEIE----QLEQEEEKLKERLEELEEDLSSLEQEI 753
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 636 EQVSEELVRLQKDNDSLQGK-HSLHVSLQLAEDFILPDTVEVLRELVLKYRENIVHVRTAADHMEEKLKAEiLFLKEQIQ 714
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDlHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRL-TLEKEYLE 832
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 715 AEQCLKENLEETLQLEIENCKEEIAS----ISSLKAELERIKVEKGQLESTLREKSQQLESLQEMKVNLEEQLKKETAAK 790
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENlngkKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912
|
810 820
....*....|....*....|..
gi 238231439 791 ATVEQLMFEEKNKAQRLQTELD 812
Cdd:TIGR02169 913 EKKRKRLSELKAKLEALEEELS 934
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
15-215 |
7.96e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 39.72 E-value: 7.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 15 QQRVAELEKINAEFLRAQQQLEQEFNQkrakfkelylakEEDLKRQNAVLQAAQDDlghlrtqlwEAQAEMENIKAIATV 94
Cdd:pfam17380 442 EERAREMERVRLEEQERQQQVERLRQQ------------EEERKRKKLELEKEKRD---------RKRAEEQRRKILEKE 500
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 95 SENTKQEAIDEVKRQWReevaslqaimketvrdyehqfhLRLEQERAQWAQYRESAEREIADLRRRLSEGQEEENLENEM 174
Cdd:pfam17380 501 LEERKQAMIEEERKRKL----------------------LEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQM 558
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 238231439 175 KKAQEDaeklRSVVMPMEKEIAALKdKLTEAEDKIKELEAS 215
Cdd:pfam17380 559 RKATEE----RSRLEAMEREREMMR-QIVESEKARAEYEAT 594
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
702-844 |
8.98e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 39.61 E-value: 8.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 702 LKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIAS--ISSLKAELERIKVEKGQLESTLREKSQQLESLQEMKVNL 779
Cdd:COG3206 224 LESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAAL 303
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 238231439 780 EEQLKKETA-AKATVEQLMFEEKNKAQRLQTELdvsEQVQRDFVKLSQTLQVQLERIRQADSLERI 844
Cdd:COG3206 304 RAQLQQEAQrILASLEAELEALQAREASLQAQL---AQLEARLAELPELEAELRRLEREVEVAREL 366
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
151-272 |
9.33e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 38.75 E-value: 9.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 151 EREIADLRRRLSEGQEE-ENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELE-----ASKVKE---LN 221
Cdd:COG1579 16 DSELDRLEHRLKELPAElAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEeqlgnVRNNKEyeaLQ 95
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 238231439 222 HYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQ 272
Cdd:COG1579 96 KEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE 146
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
35-271 |
9.96e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 39.64 E-value: 9.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 35 LEQEFNQKRAKFKElYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEAIDEVKRQwREEV 114
Cdd:PRK02224 211 LESELAELDEEIER-YEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDL-RERL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 115 ASLQAIMKETVRD--YEHQFHLRLEQERAQWAQYRESAEREIADLRRRLSEGQEE-ENLENEMKKAQEDAEKLRSVVMPM 191
Cdd:PRK02224 289 EELEEERDDLLAEagLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEaESLREDADDLEERAEELREEAAEL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238231439 192 EKEIAALKDKLTEAEDKIKELEaSKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQ 271
Cdd:PRK02224 369 ESELEEAREAVEDRREEIEELE-EEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEA 447
|
|
| |
