Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361766 358 SFSCPEPACGKSFNFKKHLKEHMKlhSDTRDYICEFCArsfrtssnlvihrrihTGEKPLQCEICGFTcrqKASLNWHQR 437
Cdd:COG5236 151 SFKCPKSKCHRRCGSLKELKKHYK--AQHGFVLCSECI----------------GNKKDFWNEIRLFR---SSTLRDHKN 209

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 21361766 438 KHAETVAALRFP-CEFCGKRFEKPDSVAAHRSKSHPALLLAPQESPSGP 485
Cdd:COG5236 210 GGLEEEGFKGHPlCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRY 258

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361766 358 SFSCPEPACGKSFNFKKHLKEHMKlhSDTRDYICEFCArsfrtssnlvihrrihTGEKPLQCEICGFTcrqKASLNWHQR 437
Cdd:COG5236 151 SFKCPKSKCHRRCGSLKELKKHYK--AQHGFVLCSECI----------------GNKKDFWNEIRLFR---SSTLRDHKN 209

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 21361766 438 KHAETVAALRFP-CEFCGKRFEKPDSVAAHRSKSHPALLLAPQESPSGP 485
Cdd:COG5236 210 GGLEEEGFKGHPlCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRY 258

N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Oryza sativa SUPPRESSOR OF FRI 4 (OsSUF4) is a C2H2-type zinc finger transcription factor which interacts with the major H3K36 methyltransferase SDG725 to promote H3K36me3 (tri-methylation at H3K9) establishment. The transcription factor OsSUF4 recognizes a specific 7-bp DNA element (5'-CGGAAAT-3'), which is contained in the promoter regions of many genes throughout the rice genome. Through interaction with OsSUF4, SDG725 is recruited to the promoters of key florigen genes, RICE FLOWERING LOCUS T1 (RFT1) and Heading date 3a (Hd3a), for H3K36 deposition to promote gene activation and rice plant flowering. OsSUF4 target genes include a number of genes involved in many biological processes. Flowering plant Arabidopsis SUF4 binds to a 15bp DNA element (5'-CCAAATTTTAAGTTT-3') within the promoter of the floral repressor gene FLOWERING LOCUS C (FLC) and recruits the FRI-C transcription activator complex to the FLC promoter. Although the DNA-binding element and target genes of AtSUF4 are different from those of OsSUF4, AtSUF4 is known to interact with the Arabidopsis H3K36 methyltransferase SDG8 (also known as ASHH2/EFS/SET8), and the methylation deposition mechanism mediated by the SUF4 transcription factor and H3K36 methyltransferase may be conserved in Arabidopsis and rice. Proteins in this family have two conserved C2H2-type zinc finger motifs at the N-terminus (included in this model), and a large proline-rich domain at the C-terminus; for OsSUF4, it has been shown that the N-terminal zinc-finger domain is responsible for DNA binding, and that the C-terminal domain interacts with SDG725.

                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 21361766 335 CGRIFSNRQYLNHHKKYQHihqksFSCPEpaCGKSFNFKKHLKEHMK-LHSDTRD 388
Cdd:cd20908   7 CDREFDDEKILIQHQKAKH-----FKCHI--CHKKLYTAGGLAVHCLqVHKETLT 54

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361766   208 DASLWTYSSSPDDSEPDAPrllPSPVTCTPKEGE-TPPAPAALSSPLAVPALSASSLSSRAPPPAevrvqpqlsrtPQAA 286
Cdd:PRK12270   26 DPSWREFFADYGPGSTAAP---TAAAAAAAAAASaPAAAPAAKAPAAPAPAPPAAAAPAAPPKPA-----------AAAA 91

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 21361766   287 QQTEALASTGSQAQSAPTPAWDEDTAQigpkRIRKAAKR 325
Cdd:PRK12270   92 AAAAPAAPPAAAAAAAPAAAAVEDEVT----PLRGAAAA 126

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361766 358 SFSCPEPACGKSFNFKKHLKEHMKlhSDTRDYICEFCArsfrtssnlvihrrihTGEKPLQCEICGFTcrqKASLNWHQR 437
Cdd:COG5236 151 SFKCPKSKCHRRCGSLKELKKHYK--AQHGFVLCSECI----------------GNKKDFWNEIRLFR---SSTLRDHKN 209

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 21361766 438 KHAETVAALRFP-CEFCGKRFEKPDSVAAHRSKSHPALLLAPQESPSGP 485
Cdd:COG5236 210 GGLEEEGFKGHPlCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRY 258

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.

                          10        20
                  ....*....|....*....|...
gi 21361766   389 YICEFCARSFRTSSNLVIHRRIH 411
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.

                          10        20
                  ....*....|....*....|....*
gi 21361766   359 FSCPEpaCGKSFNFKKHLKEHMKLH 383
Cdd:pfam00096   1 YKCPD--CGKSFSRKSNLKRHLRTH 23

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.

                          10        20
                  ....*....|....*....|..
gi 21361766   418 QCEICGFTCRQKASLNWHQRKH 439
Cdd:pfam00096   2 KCPDCGKSFSRKSNLKRHLRTH 23

envelope glycoprotein C; Provisional

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361766  215 SSSPDDSEPDaPRLLPSPVTCTPKEGETPPAPAALSSPlaVPALSASSLSSRAPPPAevrVQPQL--SRTPQ-------A 285
Cdd:PHA03269  46 PHQAASRAPD-PAVAPTSAASRKPDLAQAPTPAASEKF--DPAPAPHQAASRAPDPA---VAPQLaaAPKPDaaeaftsA 119

                         90       100
                 ....*....|....*....|....*....
gi 21361766  286 AQQTEALASTG-SQAQSAPTPAWDEDTAQ 313
Cdd:PHA03269 120 AQAHEAPADAGtSAASKKPDPAAHTQHSP 148