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Conserved domains on  [gi|8394472|ref|NP_058752|]
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spermatid nuclear transition protein 1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TP1 super family cl15500
Nuclear transition protein 1;
1-51 5.34e-09

Nuclear transition protein 1;


The actual alignment was detected with superfamily member pfam02079:

Pssm-ID: 460439  Cd Length: 51  Bit Score: 46.24  E-value: 5.34e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 8394472     1 MSTSRKLKTHGMRRGKNRAPHKGVKRGGSKRKYRKSSLKSRKRGDDASRNY 51
Cdd:pfam02079  1 MSSRKKKKHGGMRGGKNAAHHGGKKGGGKKKKRKGGLKKRKKCCDAANNNR 51
 
Name Accession Description Interval E-value
TP1 pfam02079
Nuclear transition protein 1;
1-51 5.34e-09

Nuclear transition protein 1;


Pssm-ID: 460439  Cd Length: 51  Bit Score: 46.24  E-value: 5.34e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 8394472     1 MSTSRKLKTHGMRRGKNRAPHKGVKRGGSKRKYRKSSLKSRKRGDDASRNY 51
Cdd:pfam02079  1 MSSRKKKKHGGMRGGKNAAHHGGKKGGGKKKKRKGGLKKRKKCCDAANNNR 51
 
Name Accession Description Interval E-value
TP1 pfam02079
Nuclear transition protein 1;
1-51 5.34e-09

Nuclear transition protein 1;


Pssm-ID: 460439  Cd Length: 51  Bit Score: 46.24  E-value: 5.34e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 8394472     1 MSTSRKLKTHGMRRGKNRAPHKGVKRGGSKRKYRKSSLKSRKRGDDASRNY 51
Cdd:pfam02079  1 MSSRKKKKHGGMRGGKNAAHHGGKKGGGKKKKRKGGLKKRKKCCDAANNNR 51
TP1 pfam02079
Nuclear transition protein 1;
2-52 9.98e-09

Nuclear transition protein 1;


Pssm-ID: 460439  Cd Length: 51  Bit Score: 45.47  E-value: 9.98e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 8394472     2 STSRKLKTHGMRRGKNRAPHKGVKRGGSKRKYRKSSLKSRKRGDDASRNYR 52
Cdd:pfam02079  1 MSSRKKKKHGGMRGGKNAAHHGGKKGGGKKKKRKGGLKKRKKCCDAANNNR 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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