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Conserved domains on  [gi|7705630|ref|NP_057151|]
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small ribosomal subunit protein bS18m isoform 1 [Homo sapiens]

Protein Classification

bS18 family ribosomal protein( domain architecture ID 10471228)

bS18 (bS18m and bS18c for mitoribosome and chloroplast) family ribosomal protein is a component of the small ribosomal subunit and it is involved in ribosomal assembly.

Gene Symbol:  rpsR
Gene Ontology:  GO:0006412|GO:0003735|GO:0019843
PubMed:  24524803|27023846

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S18 pfam01084
Ribosomal protein S18;
70-120 5.57e-25

Ribosomal protein S18;


:

Pssm-ID: 460054  Cd Length: 52  Bit Score: 90.12  E-value: 5.57e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 7705630     70 KHVDYKNVQLLSQFVSPfTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFM 120
Cdd:pfam01084   3 EYIDYKDVELLSQFITE-RGKILPRRITGLCAKHQRKLAKAIKRARHLALL 52
 
Name Accession Description Interval E-value
Ribosomal_S18 pfam01084
Ribosomal protein S18;
70-120 5.57e-25

Ribosomal protein S18;


Pssm-ID: 460054  Cd Length: 52  Bit Score: 90.12  E-value: 5.57e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 7705630     70 KHVDYKNVQLLSQFVSPfTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFM 120
Cdd:pfam01084   3 EYIDYKDVELLSQFITE-RGKILPRRITGLCAKHQRKLAKAIKRARHLALL 52
RpsR COG0238
Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 ...
 63-121 1.78e-18

Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440008  Cd Length: 81  Bit Score: 74.03  E-value: 1.78e-18
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7705630   63 KKCILCG---KHVDYKNVQLLSQFVSPFtGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMP 121
Cdd:COG0238  15 KVCRFCAdkiEYIDYKDVELLKKFISER-GKILPRRITGTCAKHQRQLATAIKRARHLALLP 75
rps18 CHL00077
ribosomal protein S18
 69-126 6.77e-16

ribosomal protein S18


Pssm-ID: 177016 [Multi-domain]  Cd Length: 86  Bit Score: 67.69  E-value: 6.77e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 7705630    69 GKHVDYKNVQLLSQFVSpFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMPVTYKD 126
Cdd:CHL00077  25 GDRIDYKNMSLLSRFIS-EQGKILSRRVTRLTLKQQRLITKAIKQARILSLLPFLNNE 81
S18 TIGR00165
ribosomal protein S18; This ribosomal small subunit protein is found in all eubacteria so far, ...
 65-125 1.49e-10

ribosomal protein S18; This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272937  Cd Length: 70  Bit Score: 53.58  E-value: 1.49e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7705630     65 CILCGKHVDYKNVQLLSQFVSPFtGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMPVTYK 125
Cdd:TIGR00165  11 TAEGIQFIDYKDLDLLKKFISER-GKILPRRITGTSAKYQRRLAVAIKRARYLALLPYVKD 70
 
Name Accession Description Interval E-value
Ribosomal_S18 pfam01084
Ribosomal protein S18;
70-120 5.57e-25

Ribosomal protein S18;


Pssm-ID: 460054  Cd Length: 52  Bit Score: 90.12  E-value: 5.57e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 7705630     70 KHVDYKNVQLLSQFVSPfTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFM 120
Cdd:pfam01084   3 EYIDYKDVELLSQFITE-RGKILPRRITGLCAKHQRKLAKAIKRARHLALL 52
RpsR COG0238
Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 ...
 63-121 1.78e-18

Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440008  Cd Length: 81  Bit Score: 74.03  E-value: 1.78e-18
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7705630   63 KKCILCG---KHVDYKNVQLLSQFVSPFtGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMP 121
Cdd:COG0238  15 KVCRFCAdkiEYIDYKDVELLKKFISER-GKILPRRITGTCAKHQRQLATAIKRARHLALLP 75
rps18 CHL00077
ribosomal protein S18
 69-126 6.77e-16

ribosomal protein S18


Pssm-ID: 177016 [Multi-domain]  Cd Length: 86  Bit Score: 67.69  E-value: 6.77e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 7705630    69 GKHVDYKNVQLLSQFVSpFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMPVTYKD 126
Cdd:CHL00077  25 GDRIDYKNMSLLSRFIS-EQGKILSRRVTRLTLKQQRLITKAIKQARILSLLPFLNNE 81
S18 TIGR00165
ribosomal protein S18; This ribosomal small subunit protein is found in all eubacteria so far, ...
 65-125 1.49e-10

ribosomal protein S18; This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272937  Cd Length: 70  Bit Score: 53.58  E-value: 1.49e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7705630     65 CILCGKHVDYKNVQLLSQFVSPFtGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMPVTYK 125
Cdd:TIGR00165  11 TAEGIQFIDYKDLDLLKKFISER-GKILPRRITGTSAKYQRRLAVAIKRARYLALLPYVKD 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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