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Conserved domains on  [gi|7705618|ref|NP_057134|]
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large ribosomal subunit protein uL11m isoform a [Homo sapiens]

Protein Classification

ribosomal L11p family protein( domain architecture ID 10085967)

ribosomal L11p family protein similar to mitochondrial 39S ribosomal protein L11

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ribosomal_L11 cd00349
Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S ...
20-155 1.03e-58

Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal protein L12, which is distinct from the L12 involved in the formation of the L7/L12 stalk. The C-terminal domain (CTD) of L11 is essential for binding 23S rRNA, while the N-terminal domain (NTD) contains the binding site for the antibiotics thiostrepton and micrococcin. L11 and 23S rRNA form an essential part of the GTPase-associated region (GAR). Based on differences in the relative positions of the L11 NTD and CTD during the translational cycle, L11 is proposed to play a significant role in the binding of initiation factors, elongation factors, and release factors to the ribosome. Several factors, including the class I release factors RF1 and RF2, are known to interact directly with L11. In eukaryotes, L11 has been implicated in regulating the levels of ubiquinated p53 and MDM2 in the MDM2-p53 feedback loop, which is responsible for apoptosis in response to DNA damage. In bacteria, the "stringent response" to harsh conditions allows bacteria to survive, and ribosomes that lack L11 are deficient in stringent factor stimulation.


:

Pssm-ID: 100101  Cd Length: 131  Bit Score: 179.95  E-value: 1.03e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618   20 IRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKeGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEK 99
Cdd:cd00349   1 IKLQVPAGKASPAPPLGPALGQLGVNIMKFCKEFNARTKDYK-GLPVPVKITVYNDRSFTFEVKTPPASALLKKAAGIEK 79
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 7705618  100 GARQTGKEVAGLVTLKHVYEIARIKAQDeafaLQDVPLSSVVRSIIGSARSLGIRV 155
Cdd:cd00349  80 GSKKPNKEKVGNITLDQVYEIAKIKLPD----LNAKTLKSAVKEILGTARSMGITV 131
 
Name Accession Description Interval E-value
Ribosomal_L11 cd00349
Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S ...
20-155 1.03e-58

Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal protein L12, which is distinct from the L12 involved in the formation of the L7/L12 stalk. The C-terminal domain (CTD) of L11 is essential for binding 23S rRNA, while the N-terminal domain (NTD) contains the binding site for the antibiotics thiostrepton and micrococcin. L11 and 23S rRNA form an essential part of the GTPase-associated region (GAR). Based on differences in the relative positions of the L11 NTD and CTD during the translational cycle, L11 is proposed to play a significant role in the binding of initiation factors, elongation factors, and release factors to the ribosome. Several factors, including the class I release factors RF1 and RF2, are known to interact directly with L11. In eukaryotes, L11 has been implicated in regulating the levels of ubiquinated p53 and MDM2 in the MDM2-p53 feedback loop, which is responsible for apoptosis in response to DNA damage. In bacteria, the "stringent response" to harsh conditions allows bacteria to survive, and ribosomes that lack L11 are deficient in stringent factor stimulation.


Pssm-ID: 100101  Cd Length: 131  Bit Score: 179.95  E-value: 1.03e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618   20 IRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKeGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEK 99
Cdd:cd00349   1 IKLQVPAGKASPAPPLGPALGQLGVNIMKFCKEFNARTKDYK-GLPVPVKITVYNDRSFTFEVKTPPASALLKKAAGIEK 79
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 7705618  100 GARQTGKEVAGLVTLKHVYEIARIKAQDeafaLQDVPLSSVVRSIIGSARSLGIRV 155
Cdd:cd00349  80 GSKKPNKEKVGNITLDQVYEIAKIKLPD----LNAKTLKSAVKEILGTARSMGITV 131
RL11 smart00649
Ribosomal protein L11/L12;
20-156 1.47e-58

Ribosomal protein L11/L12;


Pssm-ID: 197819  Cd Length: 132  Bit Score: 179.64  E-value: 1.47e-58
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618      20 IRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDiKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEK 99
Cdd:smart00649   1 IKLQIPAGKANPAPPLGPALGQLGINIMEFCKEFNARTKD-KKGLPIPVKITVYNDKSFTFILKTPPASALLKKAAGIEK 79
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 7705618     100 GARQTGKEVAGLVTLKHVYEIARIKAQDeafaLQDVPLSSVVRSIIGSARSLGIRVV 156
Cdd:smart00649  80 GSKKPGKKKVGNITLDQVYEIAKIKRPD----LNAKDLEAAVKEILGTARSMGITVE 132
L11_bact TIGR01632
50S ribosomal protein uL11, bacterial form; This model represents bacterial, chloroplast, and ...
15-157 6.23e-52

50S ribosomal protein uL11, bacterial form; This model represents bacterial, chloroplast, and most mitochondrial forms of 50S ribosomal protein L11. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 233500  Cd Length: 140  Bit Score: 163.29  E-value: 6.23e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618     15 EVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAA 94
Cdd:TIGR01632   2 KIVGIIKLQVPAGQANPAPPVGPALGQRGVNIMEFCKQFNARTADYEPGLPVPVVITVYEDKSFTFIVKTPPVSYLLKKA 81
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7705618     95 AGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDeafaLQDVPLSSVVRSIIGSARSLGIRVVK 157
Cdd:TIGR01632  82 AGVEKGSKNPKKEKVGKITRKQVREIAEIKMSD----LNTKDIEAAMKIIAGTAKSMGIEIVG 140
RplK COG0080
Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L11 ...
15-157 2.58e-48

Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L11 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439850  Cd Length: 141  Bit Score: 154.09  E-value: 2.58e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618   15 EVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDiKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAA 94
Cdd:COG0080   4 KVKGVIKLQVPAGKANPAPPVGPALGQHGVNIMEFCKEFNAKTKD-EKGMIVPVVITVYSDRSFTFIVKTPPASVLLKKA 82
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7705618   95 AGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDeafaLQDVPLSSVVRSIIGSARSLGIRVVK 157
Cdd:COG0080  83 AGIEKGSGEPNKEKVGKITREQVREIAEIKMPD----LNAKDLEAAVKIIAGTARSMGITVEG 141
rplK PRK00140
50S ribosomal protein L11; Validated
15-156 1.72e-44

50S ribosomal protein L11; Validated


Pssm-ID: 234661  Cd Length: 141  Bit Score: 144.12  E-value: 1.72e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618    15 EVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKeGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAA 94
Cdd:PRK00140   4 KVVGYIKLQIPAGKANPAPPVGPALGQRGVNIMEFCKAFNARTQDQK-GLPIPVVITVYEDRSFTFITKTPPASVLLKKA 82
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7705618    95 AGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDeafaLQDVPLSSVVRSIIGSARSLGIRVV 156
Cdd:PRK00140  83 AGIEKGSGEPNKEKVGKITRAQVREIAETKMPD----LNAADIEAAMRMIAGTARSMGIVVE 140
Ribosomal_L11 pfam00298
Ribosomal protein L11, RNA binding domain;
83-155 1.14e-24

Ribosomal protein L11, RNA binding domain;


Pssm-ID: 459750  Cd Length: 69  Bit Score: 91.25  E-value: 1.14e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7705618     83 GQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFAlqdvPLSSVVRSIIGSARSLGIRV 155
Cdd:pfam00298   1 KTPPASYLLKKAAGIEKGSGKPGKEKVGKITLKQVYEIAKIKMPDLNAA----DLEAAVKSIAGTARSMGITV 69
 
Name Accession Description Interval E-value
Ribosomal_L11 cd00349
Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S ...
20-155 1.03e-58

Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal protein L12, which is distinct from the L12 involved in the formation of the L7/L12 stalk. The C-terminal domain (CTD) of L11 is essential for binding 23S rRNA, while the N-terminal domain (NTD) contains the binding site for the antibiotics thiostrepton and micrococcin. L11 and 23S rRNA form an essential part of the GTPase-associated region (GAR). Based on differences in the relative positions of the L11 NTD and CTD during the translational cycle, L11 is proposed to play a significant role in the binding of initiation factors, elongation factors, and release factors to the ribosome. Several factors, including the class I release factors RF1 and RF2, are known to interact directly with L11. In eukaryotes, L11 has been implicated in regulating the levels of ubiquinated p53 and MDM2 in the MDM2-p53 feedback loop, which is responsible for apoptosis in response to DNA damage. In bacteria, the "stringent response" to harsh conditions allows bacteria to survive, and ribosomes that lack L11 are deficient in stringent factor stimulation.


Pssm-ID: 100101  Cd Length: 131  Bit Score: 179.95  E-value: 1.03e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618   20 IRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKeGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEK 99
Cdd:cd00349   1 IKLQVPAGKASPAPPLGPALGQLGVNIMKFCKEFNARTKDYK-GLPVPVKITVYNDRSFTFEVKTPPASALLKKAAGIEK 79
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 7705618  100 GARQTGKEVAGLVTLKHVYEIARIKAQDeafaLQDVPLSSVVRSIIGSARSLGIRV 155
Cdd:cd00349  80 GSKKPNKEKVGNITLDQVYEIAKIKLPD----LNAKTLKSAVKEILGTARSMGITV 131
RL11 smart00649
Ribosomal protein L11/L12;
20-156 1.47e-58

Ribosomal protein L11/L12;


Pssm-ID: 197819  Cd Length: 132  Bit Score: 179.64  E-value: 1.47e-58
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618      20 IRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDiKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEK 99
Cdd:smart00649   1 IKLQIPAGKANPAPPLGPALGQLGINIMEFCKEFNARTKD-KKGLPIPVKITVYNDKSFTFILKTPPASALLKKAAGIEK 79
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 7705618     100 GARQTGKEVAGLVTLKHVYEIARIKAQDeafaLQDVPLSSVVRSIIGSARSLGIRVV 156
Cdd:smart00649  80 GSKKPGKKKVGNITLDQVYEIAKIKRPD----LNAKDLEAAVKEILGTARSMGITVE 132
L11_bact TIGR01632
50S ribosomal protein uL11, bacterial form; This model represents bacterial, chloroplast, and ...
15-157 6.23e-52

50S ribosomal protein uL11, bacterial form; This model represents bacterial, chloroplast, and most mitochondrial forms of 50S ribosomal protein L11. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 233500  Cd Length: 140  Bit Score: 163.29  E-value: 6.23e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618     15 EVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAA 94
Cdd:TIGR01632   2 KIVGIIKLQVPAGQANPAPPVGPALGQRGVNIMEFCKQFNARTADYEPGLPVPVVITVYEDKSFTFIVKTPPVSYLLKKA 81
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7705618     95 AGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDeafaLQDVPLSSVVRSIIGSARSLGIRVVK 157
Cdd:TIGR01632  82 AGVEKGSKNPKKEKVGKITRKQVREIAEIKMSD----LNTKDIEAAMKIIAGTAKSMGIEIVG 140
RplK COG0080
Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L11 ...
15-157 2.58e-48

Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L11 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439850  Cd Length: 141  Bit Score: 154.09  E-value: 2.58e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618   15 EVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDiKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAA 94
Cdd:COG0080   4 KVKGVIKLQVPAGKANPAPPVGPALGQHGVNIMEFCKEFNAKTKD-EKGMIVPVVITVYSDRSFTFIVKTPPASVLLKKA 82
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7705618   95 AGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDeafaLQDVPLSSVVRSIIGSARSLGIRVVK 157
Cdd:COG0080  83 AGIEKGSGEPNKEKVGKITREQVREIAEIKMPD----LNAKDLEAAVKIIAGTARSMGITVEG 141
rplK PRK00140
50S ribosomal protein L11; Validated
15-156 1.72e-44

50S ribosomal protein L11; Validated


Pssm-ID: 234661  Cd Length: 141  Bit Score: 144.12  E-value: 1.72e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618    15 EVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKeGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAA 94
Cdd:PRK00140   4 KVVGYIKLQIPAGKANPAPPVGPALGQRGVNIMEFCKAFNARTQDQK-GLPIPVVITVYEDRSFTFITKTPPASVLLKKA 82
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7705618    95 AGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDeafaLQDVPLSSVVRSIIGSARSLGIRVV 156
Cdd:PRK00140  83 AGIEKGSGEPNKEKVGKITRAQVREIAETKMPD----LNAADIEAAMRMIAGTARSMGIVVE 140
rpl11 CHL00127
ribosomal protein L11; Validated
18-156 8.74e-33

ribosomal protein L11; Validated


Pssm-ID: 177049  Cd Length: 140  Bit Score: 114.39  E-value: 8.74e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618    18 GVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDiKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGI 97
Cdd:CHL00127   7 AIIKLALPAGKATPAPPVGPALGQHGVNINLFCKEYNARTKD-KIGLIIPVEISVYEDKSYTFILKTPPASVLLAKAAGI 85
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 7705618    98 EKGARQTGKEVAGLVTLKHVYEIARIKAQDeafaLQDVPLSSVVRSIIGSARSLGIRVV 156
Cdd:CHL00127  86 KKGSGEPNKKKVGSITIKQLEEIAQIKLPD----LNTISLSKAIKIIEGTAKNMGISIK 140
rpl11p PRK01143
50S ribosomal protein L11P; Validated
18-155 3.19e-29

50S ribosomal protein L11P; Validated


Pssm-ID: 234908  Cd Length: 163  Bit Score: 106.13  E-value: 3.19e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618    18 GVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKeGIPLPTKILVKPD-RTFEIKIGQPTVSYFLKAAAG 96
Cdd:PRK01143   3 KVVEVLVEGGKATPGPPLGPALGPLGLNVKQVVQEINEKTKDFK-GMQVPVKVIVDTDtKKFEIEVGIPPTTALIKKELG 81
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 7705618    97 IEKGARQTGKEVAGLVTLKHVYEIARIKAQDeafaLQDVPLSSVVRSIIGSARSLGIRV 155
Cdd:PRK01143  82 IEKGSGEPGHEVVGNLSFEQVVKIAIMKKDD----LLSYDLKAAVKEVLGTCVSMGVTV 136
Ribosomal_L11 pfam00298
Ribosomal protein L11, RNA binding domain;
83-155 1.14e-24

Ribosomal protein L11, RNA binding domain;


Pssm-ID: 459750  Cd Length: 69  Bit Score: 91.25  E-value: 1.14e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7705618     83 GQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFAlqdvPLSSVVRSIIGSARSLGIRV 155
Cdd:pfam00298   1 KTPPASYLLKKAAGIEKGSGKPGKEKVGKITLKQVYEIAKIKMPDLNAA----DLEAAVKSIAGTARSMGITV 69
Ribosomal_L11_N pfam03946
Ribosomal protein L11, N-terminal domain; The N-terminal domain of Ribosomal protein L11 ...
20-78 6.74e-24

Ribosomal protein L11, N-terminal domain; The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.


Pssm-ID: 461103  Cd Length: 58  Bit Score: 89.00  E-value: 6.74e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 7705618     20 IRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKeGIPLPTKILVKPDRTF 78
Cdd:pfam03946   1 IKLQVPAGKATPAPPLGPALGPLGVNIMKFCKDFNAATKDYK-GLPVPVKITVYQDRSF 58
PRK14539 PRK14539
50S ribosomal protein L11/unknown domain fusion protein; Provisional
11-191 1.83e-18

50S ribosomal protein L11/unknown domain fusion protein; Provisional


Pssm-ID: 184732  Cd Length: 196  Bit Score: 78.83  E-value: 1.83e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618    11 LRKPEVGGVIRAIVRAGLAMPGPPLGPVlgqrGVSINQFCKEFNERTKDiKEGIPLPTKILVKPDRTFEIKIGQPTVSYF 90
Cdd:PRK14539   1 MAKKEVVKVAKLQFNAGQAKPGPSLAGV----GINMPEFTKQFNDATRD-RGGEPVPVQITVYKDKSFDFKLFTAPASFK 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618    91 LKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDeafaLQDVPLSSVVRSIIGSARSLGIRV--VKDLSSEELAAFQ 168
Cdd:PRK14539  76 IKQAAKIKSGSANSKTTIVGTITLSQLEEIAKYKLPD----LNTDDVEEAMHTIAGTAKNMGVLVegYDDVVKAKEEAKA 151
                        170       180
                 ....*....|....*....|...
gi 7705618   169 KERAIFLAAQKEADLAAQEEAAK 191
Cdd:PRK14539 152 AAKAAALAKAKEASLKSAEAELK 174
PTZ00321 PTZ00321
ribosomal protein L11; Provisional
21-190 2.35e-15

ribosomal protein L11; Provisional


Pssm-ID: 240358 [Multi-domain]  Cd Length: 342  Bit Score: 72.70  E-value: 2.35e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618    21 RAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTK-DIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAagIEK 99
Cdd:PTZ00321  54 RFFIKAGKAATGPPVGQEFSKLGLKAMDFAKSFNDRTKpHFKDDVELIVRIQVYFDKSYLFTIEPPPTAWFILRA--LRK 131
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618   100 GARQTGKEV-----AGLVTLKHVYEIARIKAQdeAFALQDVPLSSV-VRSIIGSARSLGIRV----------VKDLSSEE 163
Cdd:PTZ00321 132 KRRETGPVPlrghyCALMTLEMAYEIAKMKPR--SWGRPEYPLIETrVRRVVGQARRMGVCFigvdtphsspVKGMTEKQ 209
                        170       180
                 ....*....|....*....|....*...
gi 7705618   164 -LAAFQKERAIFLaAQKEADLAAQEEAA 190
Cdd:PTZ00321 210 yAEESERYRAMHM-EQYEALRQRELEEA 236
PTZ00105 PTZ00105
60S ribosomal protein L12; Provisional
35-155 5.85e-04

60S ribosomal protein L12; Provisional


Pssm-ID: 240269  Cd Length: 140  Bit Score: 38.47  E-value: 5.85e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7705618    35 LGPVLGQRGVSINQFCKEFNERTKDIKeGIPLPTKILVKpDRTFEIKIgQPTVSYFLKAAAGIEKGARQTGKEVA--GLV 112
Cdd:PTZ00105   3 LAPKVGPLGLSPKKVGDDIAKATKDWK-GLKVTVKLTVQ-NRQATVEV-VPTASSLLIKALKEPPRDRKKVKNIKhsGNL 79
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 7705618   113 TLKHVYEIARIKaQDEAFALQdvpLSSVVRSIIGSARSLGIRV 155
Cdd:PTZ00105  80 TFDQVIKIARTM-RPKSMAKT---FKGTVKEVLGTCVSIGCTV 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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