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Conserved domains on  [gi|148596965|ref|NP_056136|]
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CREB-regulated transcription coactivator 1 isoform 1 [Homo sapiens]

Protein Classification

CREB-regulated transcription coactivator( domain architecture ID 10583816)

CREB-regulated transcription coactivator enhances the activity of CRE-depended transcription via a phosphorylation-independent interaction with the bZIP DNA binding/dimerization domain of CREB (cAMP Response Element-Binding)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TORC_M pfam12885
Transducer of regulated CREB activity middle domain; This family includes the region between ...
 148-293 3.06e-74

Transducer of regulated CREB activity middle domain; This family includes the region between the N and C terminus of TORC proteins. TORC (Transducer of regulated CREB activity) is a protein family of coactivators that enhances the activity of CRE-depended transcription via a phosphorylation-independent interaction with the bZIP DNA binding/dimerization domain of CREB (cAMP Response Element-Binding). Although the C- and N- terminal domains of these proteins have been well characterized, no functional role has been assigned to the central region, yet.


:

Pssm-ID: 463739  Cd Length: 154  Bit Score: 234.64  E-value: 3.06e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148596965  148 RTNSDSALHQSTMTPTQPESFSSGSQDVHQ-----KRVLLLTVPGMEETTSEADKNLSKQAWDTKKT---GSRPKSCEVP 219
Cdd:pfam12885   1 RTNSDSALHTSAMNPNPQDPFTGGSQELQPaprgfGRVLLLTVPGTEENLLEVDKPLPKQLWDAKKVqslSSRPKSCEVP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 148596965  220 GINIFPSADQENTTALIPATHNTGGSLPDLTNIHFPSPLPTPLDPEEPTFPALSSSSSTGNLAANLTHLGIGGA 293
Cdd:pfam12885  81 GINIFPSPDQNATLSLFPAALNTGGSLPDLTNLHFPSPLPTPLDPEDTAFPSLSGGNSTGNLAAAMTHLGISSS 154
TORC_C pfam12886
Transducer of regulated CREB activity, C terminus; This family includes the C terminal region ...
 559-634 4.30e-33

Transducer of regulated CREB activity, C terminus; This family includes the C terminal region of TORC proteins. TORC (Transducer of regulated CREB activity) is a protein family of coactivators that enhances the activity of CRE-depended transcription via a phosphorylation-independent interaction with the bZIP DNA binding/dimerization domain of CREB (cAMP Response Element-Binding). The C terminus region is negatively charged, resembling the transcription activation domains. When this domain, from all three human TORC proteins, was expressed as fusion proteins with the DNA-binding domain of GAL4 (GAL4-BD), and tested for induction of a minimal promoter linked to GAL4-binding sites (UAS-GAL4), UAS-GAL4 was potently induced by GAL4-BD fusions containing the C-terminal portion of all three human TORCs.


:

Pssm-ID: 463740  Cd Length: 75  Bit Score: 121.35  E-value: 4.30e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 148596965  559 PNIILTvtGESPPSLSKELTSSLAGVGDVSFDSDSQFPLD-ELKIDPLTLDGLHMLNDPDMVLADPATEDTFRMDRL 634
Cdd:pfam12886   1 PNIILT--GDSSPGFSKDLSSALAGVPEVSFDADDLFPLDdELGIEPLDLDGLQMLSDPDMVLPDPATEDTFRSDRL 75
TORC_N pfam12884
Transducer of regulated CREB activity, N terminus; This family includes the N terminal region ...
 6-66 1.73e-23

Transducer of regulated CREB activity, N terminus; This family includes the N terminal region of TORC proteins. TORC (Transducer of regulated CREB activity) is a protein family of coactivators that enhances the activity of CRE-depended transcription via a phosphorylation-independent interaction with the bZIP DNA binding/dimerization domain of CREB (cAMP Response Element-Binding). The proteins display a highly conserved predicted N-terminal coiled-coil domain and an invariant sequence matching a protein kinase A (PKA) phosphorylation consensus sequence (RKXS). The coiled-coil structure interacts with the bZIP domain of CREB. This interaction may occur via ionic bonds because it is disrupted under high-salt conditions. In addition to CREB-binding, the N-terminal region plays a role in the tetramer formation of TORCs, but the physiological function of the multimeric complex has not been clarified yet.


:

Pssm-ID: 463738  Cd Length: 63  Bit Score: 94.06  E-value: 1.73e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 148596965    6 NPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARLQL--QKSQYLQLGPSRGQYYGGSLP 66
Cdd:pfam12884   1 NPRKFSEKIALHKQKQAEETAAFERIMREVSATTRDPTQSsnQKQQQLRLGLLGPQYRGGSLP 63
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 211-475 3.89e-03

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 3.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148596965  211 SRPKSCEVPGINIFPSADQENTTAliPATHNTGGSLPDLTNIHFPSPLPTPldPEEPTFPALSSSSSTGNLAANLTHLGI 290
Cdd:PHA03247 2662 SRPRRARRLGRAAQASSPPQRPRR--RAARPTVGSLTSLADPPPPPPTPEP--APHALVSATPLPPGPAAARQASPALPA 2737

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148596965  291 GGA----GQGMSTPGS-SPQHRPAGVSPLSLSTEARRQQASP----TLSPLSPITQAVAMDALSLEQQLPYAFFTQAGSQ 361
Cdd:PHA03247 2738 APAppavPAGPATPGGpARPARPPTTAGPPAPAPPAAPAAGPprrlTRPAVASLSESRESLPSPWDPADPPAAVLAPAAA 2817

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148596965  362 QPPPQPQPPPPPPPASQQPPPPPPPQAPVR--LPPGGPLLPSASLTRGP---------------------QPPPLAVTVP 418
Cdd:PHA03247 2818 LPPAASPAGPLPPPTSAQPTAPPPPPGPPPpsLPLGGSVAPGGDVRRRPpsrspaakpaaparppvrrlaRPAVSRSTES 2897

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 148596965  419 SSLPQSPPENPGQPsmgiDIASAPALQQYRTSAGSPANQSPTSPVSNQGFSPGSSPQ 475
Cdd:PHA03247 2898 FALPPDQPERPPQP----QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA 2950
 
Name Accession Description Interval E-value
TORC_M pfam12885
Transducer of regulated CREB activity middle domain; This family includes the region between ...
 148-293 3.06e-74

Transducer of regulated CREB activity middle domain; This family includes the region between the N and C terminus of TORC proteins. TORC (Transducer of regulated CREB activity) is a protein family of coactivators that enhances the activity of CRE-depended transcription via a phosphorylation-independent interaction with the bZIP DNA binding/dimerization domain of CREB (cAMP Response Element-Binding). Although the C- and N- terminal domains of these proteins have been well characterized, no functional role has been assigned to the central region, yet.


Pssm-ID: 463739  Cd Length: 154  Bit Score: 234.64  E-value: 3.06e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148596965  148 RTNSDSALHQSTMTPTQPESFSSGSQDVHQ-----KRVLLLTVPGMEETTSEADKNLSKQAWDTKKT---GSRPKSCEVP 219
Cdd:pfam12885   1 RTNSDSALHTSAMNPNPQDPFTGGSQELQPaprgfGRVLLLTVPGTEENLLEVDKPLPKQLWDAKKVqslSSRPKSCEVP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 148596965  220 GINIFPSADQENTTALIPATHNTGGSLPDLTNIHFPSPLPTPLDPEEPTFPALSSSSSTGNLAANLTHLGIGGA 293
Cdd:pfam12885  81 GINIFPSPDQNATLSLFPAALNTGGSLPDLTNLHFPSPLPTPLDPEDTAFPSLSGGNSTGNLAAAMTHLGISSS 154
TORC_C pfam12886
Transducer of regulated CREB activity, C terminus; This family includes the C terminal region ...
 559-634 4.30e-33

Transducer of regulated CREB activity, C terminus; This family includes the C terminal region of TORC proteins. TORC (Transducer of regulated CREB activity) is a protein family of coactivators that enhances the activity of CRE-depended transcription via a phosphorylation-independent interaction with the bZIP DNA binding/dimerization domain of CREB (cAMP Response Element-Binding). The C terminus region is negatively charged, resembling the transcription activation domains. When this domain, from all three human TORC proteins, was expressed as fusion proteins with the DNA-binding domain of GAL4 (GAL4-BD), and tested for induction of a minimal promoter linked to GAL4-binding sites (UAS-GAL4), UAS-GAL4 was potently induced by GAL4-BD fusions containing the C-terminal portion of all three human TORCs.


Pssm-ID: 463740  Cd Length: 75  Bit Score: 121.35  E-value: 4.30e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 148596965  559 PNIILTvtGESPPSLSKELTSSLAGVGDVSFDSDSQFPLD-ELKIDPLTLDGLHMLNDPDMVLADPATEDTFRMDRL 634
Cdd:pfam12886   1 PNIILT--GDSSPGFSKDLSSALAGVPEVSFDADDLFPLDdELGIEPLDLDGLQMLSDPDMVLPDPATEDTFRSDRL 75
TORC_N pfam12884
Transducer of regulated CREB activity, N terminus; This family includes the N terminal region ...
 6-66 1.73e-23

Transducer of regulated CREB activity, N terminus; This family includes the N terminal region of TORC proteins. TORC (Transducer of regulated CREB activity) is a protein family of coactivators that enhances the activity of CRE-depended transcription via a phosphorylation-independent interaction with the bZIP DNA binding/dimerization domain of CREB (cAMP Response Element-Binding). The proteins display a highly conserved predicted N-terminal coiled-coil domain and an invariant sequence matching a protein kinase A (PKA) phosphorylation consensus sequence (RKXS). The coiled-coil structure interacts with the bZIP domain of CREB. This interaction may occur via ionic bonds because it is disrupted under high-salt conditions. In addition to CREB-binding, the N-terminal region plays a role in the tetramer formation of TORCs, but the physiological function of the multimeric complex has not been clarified yet.


Pssm-ID: 463738  Cd Length: 63  Bit Score: 94.06  E-value: 1.73e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 148596965    6 NPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARLQL--QKSQYLQLGPSRGQYYGGSLP 66
Cdd:pfam12884   1 NPRKFSEKIALHKQKQAEETAAFERIMREVSATTRDPTQSsnQKQQQLRLGLLGPQYRGGSLP 63
PHA03247 PHA03247
large tegument protein UL36; Provisional
 211-475 3.89e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 3.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148596965  211 SRPKSCEVPGINIFPSADQENTTAliPATHNTGGSLPDLTNIHFPSPLPTPldPEEPTFPALSSSSSTGNLAANLTHLGI 290
Cdd:PHA03247 2662 SRPRRARRLGRAAQASSPPQRPRR--RAARPTVGSLTSLADPPPPPPTPEP--APHALVSATPLPPGPAAARQASPALPA 2737

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148596965  291 GGA----GQGMSTPGS-SPQHRPAGVSPLSLSTEARRQQASP----TLSPLSPITQAVAMDALSLEQQLPYAFFTQAGSQ 361
Cdd:PHA03247 2738 APAppavPAGPATPGGpARPARPPTTAGPPAPAPPAAPAAGPprrlTRPAVASLSESRESLPSPWDPADPPAAVLAPAAA 2817

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148596965  362 QPPPQPQPPPPPPPASQQPPPPPPPQAPVR--LPPGGPLLPSASLTRGP---------------------QPPPLAVTVP 418
Cdd:PHA03247 2818 LPPAASPAGPLPPPTSAQPTAPPPPPGPPPpsLPLGGSVAPGGDVRRRPpsrspaakpaaparppvrrlaRPAVSRSTES 2897

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 148596965  419 SSLPQSPPENPGQPsmgiDIASAPALQQYRTSAGSPANQSPTSPVSNQGFSPGSSPQ 475
Cdd:PHA03247 2898 FALPPDQPERPPQP----QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA 2950
PPE COG5651
PPE-repeat protein [Function unknown];
254-474 5.80e-03

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 39.49  E-value: 5.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148596965 254 FPSPLPTPLDPEEPTFPALSSSSSTGNLA--ANLTHLGIGGAGQGMSTPGSSPQHRPAGVSPLSLSTEARRQQASPTLSP 331
Cdd:COG5651  167 FTQPPPTITNPGGLLGAQNAGSGNTSSNPgfANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTGFAGTGAAAGAAAAAAA 246

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148596965 332 LSPITQAVAMDALSLEQQLPYAFFTQAGSQQPPPQPQPPPPPPPASQQPPPPPPPQAPVRLPPGGPLLPSASLTRGPQPP 411
Cdd:COG5651  247 AAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAATGLGLGAGGAAGAAGATGAGA 326

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 148596965 412 PLAVTVPSSLPQSPPENPGQPSmgidiASAPALQQYRTSAGSPANQSPTSPVSNQGFSPGSSP 474
Cdd:COG5651  327 ALGAGAAAAAAGAAAGAGAAAA-----AAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGAA 384
 
Name Accession Description Interval E-value
TORC_M pfam12885
Transducer of regulated CREB activity middle domain; This family includes the region between ...
 148-293 3.06e-74

Transducer of regulated CREB activity middle domain; This family includes the region between the N and C terminus of TORC proteins. TORC (Transducer of regulated CREB activity) is a protein family of coactivators that enhances the activity of CRE-depended transcription via a phosphorylation-independent interaction with the bZIP DNA binding/dimerization domain of CREB (cAMP Response Element-Binding). Although the C- and N- terminal domains of these proteins have been well characterized, no functional role has been assigned to the central region, yet.


Pssm-ID: 463739  Cd Length: 154  Bit Score: 234.64  E-value: 3.06e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148596965  148 RTNSDSALHQSTMTPTQPESFSSGSQDVHQ-----KRVLLLTVPGMEETTSEADKNLSKQAWDTKKT---GSRPKSCEVP 219
Cdd:pfam12885   1 RTNSDSALHTSAMNPNPQDPFTGGSQELQPaprgfGRVLLLTVPGTEENLLEVDKPLPKQLWDAKKVqslSSRPKSCEVP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 148596965  220 GINIFPSADQENTTALIPATHNTGGSLPDLTNIHFPSPLPTPLDPEEPTFPALSSSSSTGNLAANLTHLGIGGA 293
Cdd:pfam12885  81 GINIFPSPDQNATLSLFPAALNTGGSLPDLTNLHFPSPLPTPLDPEDTAFPSLSGGNSTGNLAAAMTHLGISSS 154
TORC_C pfam12886
Transducer of regulated CREB activity, C terminus; This family includes the C terminal region ...
 559-634 4.30e-33

Transducer of regulated CREB activity, C terminus; This family includes the C terminal region of TORC proteins. TORC (Transducer of regulated CREB activity) is a protein family of coactivators that enhances the activity of CRE-depended transcription via a phosphorylation-independent interaction with the bZIP DNA binding/dimerization domain of CREB (cAMP Response Element-Binding). The C terminus region is negatively charged, resembling the transcription activation domains. When this domain, from all three human TORC proteins, was expressed as fusion proteins with the DNA-binding domain of GAL4 (GAL4-BD), and tested for induction of a minimal promoter linked to GAL4-binding sites (UAS-GAL4), UAS-GAL4 was potently induced by GAL4-BD fusions containing the C-terminal portion of all three human TORCs.


Pssm-ID: 463740  Cd Length: 75  Bit Score: 121.35  E-value: 4.30e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 148596965  559 PNIILTvtGESPPSLSKELTSSLAGVGDVSFDSDSQFPLD-ELKIDPLTLDGLHMLNDPDMVLADPATEDTFRMDRL 634
Cdd:pfam12886   1 PNIILT--GDSSPGFSKDLSSALAGVPEVSFDADDLFPLDdELGIEPLDLDGLQMLSDPDMVLPDPATEDTFRSDRL 75
TORC_N pfam12884
Transducer of regulated CREB activity, N terminus; This family includes the N terminal region ...
 6-66 1.73e-23

Transducer of regulated CREB activity, N terminus; This family includes the N terminal region of TORC proteins. TORC (Transducer of regulated CREB activity) is a protein family of coactivators that enhances the activity of CRE-depended transcription via a phosphorylation-independent interaction with the bZIP DNA binding/dimerization domain of CREB (cAMP Response Element-Binding). The proteins display a highly conserved predicted N-terminal coiled-coil domain and an invariant sequence matching a protein kinase A (PKA) phosphorylation consensus sequence (RKXS). The coiled-coil structure interacts with the bZIP domain of CREB. This interaction may occur via ionic bonds because it is disrupted under high-salt conditions. In addition to CREB-binding, the N-terminal region plays a role in the tetramer formation of TORCs, but the physiological function of the multimeric complex has not been clarified yet.


Pssm-ID: 463738  Cd Length: 63  Bit Score: 94.06  E-value: 1.73e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 148596965    6 NPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARLQL--QKSQYLQLGPSRGQYYGGSLP 66
Cdd:pfam12884   1 NPRKFSEKIALHKQKQAEETAAFERIMREVSATTRDPTQSsnQKQQQLRLGLLGPQYRGGSLP 63
PHA03247 PHA03247
large tegument protein UL36; Provisional
 211-475 3.89e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 3.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148596965  211 SRPKSCEVPGINIFPSADQENTTAliPATHNTGGSLPDLTNIHFPSPLPTPldPEEPTFPALSSSSSTGNLAANLTHLGI 290
Cdd:PHA03247 2662 SRPRRARRLGRAAQASSPPQRPRR--RAARPTVGSLTSLADPPPPPPTPEP--APHALVSATPLPPGPAAARQASPALPA 2737

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148596965  291 GGA----GQGMSTPGS-SPQHRPAGVSPLSLSTEARRQQASP----TLSPLSPITQAVAMDALSLEQQLPYAFFTQAGSQ 361
Cdd:PHA03247 2738 APAppavPAGPATPGGpARPARPPTTAGPPAPAPPAAPAAGPprrlTRPAVASLSESRESLPSPWDPADPPAAVLAPAAA 2817

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148596965  362 QPPPQPQPPPPPPPASQQPPPPPPPQAPVR--LPPGGPLLPSASLTRGP---------------------QPPPLAVTVP 418
Cdd:PHA03247 2818 LPPAASPAGPLPPPTSAQPTAPPPPPGPPPpsLPLGGSVAPGGDVRRRPpsrspaakpaaparppvrrlaRPAVSRSTES 2897

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 148596965  419 SSLPQSPPENPGQPsmgiDIASAPALQQYRTSAGSPANQSPTSPVSNQGFSPGSSPQ 475
Cdd:PHA03247 2898 FALPPDQPERPPQP----QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA 2950
PPE COG5651
PPE-repeat protein [Function unknown];
254-474 5.80e-03

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 39.49  E-value: 5.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148596965 254 FPSPLPTPLDPEEPTFPALSSSSSTGNLA--ANLTHLGIGGAGQGMSTPGSSPQHRPAGVSPLSLSTEARRQQASPTLSP 331
Cdd:COG5651  167 FTQPPPTITNPGGLLGAQNAGSGNTSSNPgfANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTGFAGTGAAAGAAAAAAA 246

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148596965 332 LSPITQAVAMDALSLEQQLPYAFFTQAGSQQPPPQPQPPPPPPPASQQPPPPPPPQAPVRLPPGGPLLPSASLTRGPQPP 411
Cdd:COG5651  247 AAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAATGLGLGAGGAAGAAGATGAGA 326

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 148596965 412 PLAVTVPSSLPQSPPENPGQPSmgidiASAPALQQYRTSAGSPANQSPTSPVSNQGFSPGSSP 474
Cdd:COG5651  327 ALGAGAAAAAAGAAAGAGAAAA-----AAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGAA 384
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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