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Conserved domains on  [gi|7657269|ref|NP_055847|]
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sister chromatid cohesion protein PDS5 homolog B [Homo sapiens]

Protein Classification

sister chromatid cohesion protein PDS5( domain architecture ID 20799355)

sister chromatid cohesion protein PDS5 is essential for the establishment and maintenance of sister chromatid cohesion at centromere proximal and distal regions during S phase; also required for chromosomal condensation.

Gene Ontology:  GO:0007064|GO:0008156|GO:0051301

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PDS5 pfam20168
Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid ...
29-1099 0e+00

Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid cohesion protein PDS5. The large PDS5 molecule is exclusively alpha helical, composed of a large number of HEAT-like repeats and helical extensions/additions that deviate from the HEAT repeat pattern.


:

Pssm-ID: 466319 [Multi-domain]  Cd Length: 1051  Bit Score: 1074.53  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269      29 EEMVRRLKMVVKTFMDMDQDSEEEKELyLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTsPDKLKDIFM 108
Cdd:pfam20168    1 DELLKRLKALHEELSDLDQEDVDLKSL-DPVAKDLVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYT-DDQLKDIFK 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     109 FITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEG 188
Cdd:pfam20168   79 LFISQLRGLADPDSPYFSQYFYLLESLAEVKSIVLILDLPDADDLITELFRTFFDLVSRPHSKKVENFMLDILSELIDES 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     189 DTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHVFDLILELYNIDSH 268
Cdd:pfam20168  159 DSLPQEVLDLILAQFLRKKKKENPPAFRLAVDVCNACADKLQRYVCQYFSEILLEGDESDLELLKKAHDLILELWRIAPS 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     269 LLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKD-SELASQNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDL 347
Cdd:pfam20168  239 LLLNVIPQLEEELKADDVDIRLLATETLGRMFSEPGgSDLAKQYPSLWKAWLGRFNDKSVAVRIAWVEAAKQILLNHPDL 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     348 AKDLTEYLKVRSHDPEEAIRHDVIVSIVTAAKKDILLVN-DHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYALQSAAG 426
Cdd:pfam20168  319 RSEILEALKDRLLDPDEKVRLAAVKAIGDLDYETLLHVVsEKLLKTLAERLRDKKPSVRKEALKTLAKLYNVAYGEIEEG 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     427 -KDAAKQIAWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLNAVKALNEMWKCQNLLRHQ 505
Cdd:pfam20168  399 dEEAIEKFGWIPNKILHLYYINDPEIRALVERVLFEYLLPALLDDEERVKRLLTLLSHLDEKAKKAFNAILKRQSRLQKA 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     506 VKDLLDLIKQ------PKTDASVKAIFSKVMVITRNLPDPGKAQDFMKKFTQVleDDEKIRKQLEVLVSPTCSCKQAEGC 579
Cdd:pfam20168  479 LRKFLDLCEKyngvidDEEEEIKKKLEKIIQWLSASFPDPSKAEEDLQKFAKL--NDKRLYKLLRTCIDPDSDYKTIEKA 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     580 VREITKKLGnpkQPTNPFLEMIKFLLERIAPVHIDTESISALIKQVNKSIDGTADDEDEGVptdqairaglELLKVLSFT 659
Cdd:pfam20168  557 RKELLKRLG---DSKSSLLETLKLLLYRSSPLIVNKSSIPALLKLLRSSESGNSELANESS----------ELLKQISKV 623
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     660 HPISFHSAEtfESLLACLKMDDEKVAEAALQIFKNTGSKIEEDFPHIRSaLLPVLHHKSKKGPPRQAKYAIHCIHAIF-S 738
Cdd:pfam20168  624 FPAVFKGHV--KELVKLLKDEDPDVVEDALQALAKVGKKFPEELPTDSK-FIERLKRFALEGTPRQAKYAVRILAALAgD 700
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     739 SKETQFAQIFEPLHKSLDPSNlEHLITPLVTIGHIALLAPDQFaAPLKSLVATFIVKDLLMNDRLPGK--KTTKLWVPDE 816
Cdd:pfam20168  701 EKESVFKDLVEKLLKPLNLAS-PNLLTHLASLGQIALYAPDVF-EDHSEEITSFIVKDLLLKNRTDEEddDDDDEWVDDE 778
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     817 EVSPETMVKIQAIKMMVRWLLGMKN--NHSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKLAQEPC 894
Cdd:pfam20168  779 ELDEECKAKILALKLLVNRLLGLADdeEAEEVAKPVLKLLFAILDNEGELVEDKTTSPAEKSRLRLAAALSLLKLAREPR 858
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     895 YHEIITLEQYQLCALAINDECYQVRQVFAQKLHKGLSRLRLPLEYMAICALCAKDPVKERRAHARQCLVKNINVRREylk 974
Cdd:pfam20168  859 YDKLITPEDFNLLALLVQDPCYEVRERFLKKLHKYLKKNRLPPRFLAIFFLAAHEPEKELKEQVKTWIRSRARRRRK--- 935
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     975 qhaavsEKLLSLLPEYVVPYTIHLLAHDPDYVKVQDIEQLKDVKECLWFVLEiLMAKNENNShaFIRKMVENIKQTKDAQ 1054
Cdd:pfam20168  936 ------AKLKTLLPEYSLPRLIHLLAHHPDFSSDDNEEDLKDFAKYLEFYLD-LVATEENIS--LLYYLAQRIKQVRDAV 1006
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*...
gi 7657269    1055 GPDdakMNEKLYTVCDVAMNII--MSKSTTYSL-ESPKDPVLPARFFT 1099
Cdd:pfam20168 1007 DPD---SSENLYVLSDLAQLIIkrLAKQKGWSLqTYPGKVKLPSDLFK 1051
PTZ00449 super family cl33186
104 kDa microneme/rhoptry antigen; Provisional
1215-1410 3.82e-03

104 kDa microneme/rhoptry antigen; Provisional


The actual alignment was detected with superfamily member PTZ00449:

Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 41.98  E-value: 3.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   1215 RGRKKTPVTEQEEKLGMDdltklvqeQKPKGSQRS----RKRGHTASESDEQQWPEEKrlkedilENEDEQNSP--PKKG 1288
Cdd:PTZ00449  491 KSKKKLAPIEEEDSDKHD--------EPPEGPEASglppKAPGDKEGEEGEHEDSKES-------DEPKEGGKPgeTKEG 555
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   1289 KRGRPPKPLGGGTPKEEPTMKTSKKGSKKKSGPPAPeeeeeeerQSGNTEQKSKSKQHRVSRRAQQRaesPESSAIESTQ 1368
Cdd:PTZ00449  556 EVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDP--------EEPKKPKRPRSAQRPTRPKSPKL---PELLDIPKSP 624
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 7657269   1369 STPQKGRGrPSKTPSPSQPKKNVRVGRSKQAATKENDSSEEV 1410
Cdd:PTZ00449  625 KRPESPKS-PKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKP 665
 
Name Accession Description Interval E-value
PDS5 pfam20168
Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid ...
29-1099 0e+00

Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid cohesion protein PDS5. The large PDS5 molecule is exclusively alpha helical, composed of a large number of HEAT-like repeats and helical extensions/additions that deviate from the HEAT repeat pattern.


Pssm-ID: 466319 [Multi-domain]  Cd Length: 1051  Bit Score: 1074.53  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269      29 EEMVRRLKMVVKTFMDMDQDSEEEKELyLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTsPDKLKDIFM 108
Cdd:pfam20168    1 DELLKRLKALHEELSDLDQEDVDLKSL-DPVAKDLVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYT-DDQLKDIFK 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     109 FITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEG 188
Cdd:pfam20168   79 LFISQLRGLADPDSPYFSQYFYLLESLAEVKSIVLILDLPDADDLITELFRTFFDLVSRPHSKKVENFMLDILSELIDES 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     189 DTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHVFDLILELYNIDSH 268
Cdd:pfam20168  159 DSLPQEVLDLILAQFLRKKKKENPPAFRLAVDVCNACADKLQRYVCQYFSEILLEGDESDLELLKKAHDLILELWRIAPS 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     269 LLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKD-SELASQNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDL 347
Cdd:pfam20168  239 LLLNVIPQLEEELKADDVDIRLLATETLGRMFSEPGgSDLAKQYPSLWKAWLGRFNDKSVAVRIAWVEAAKQILLNHPDL 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     348 AKDLTEYLKVRSHDPEEAIRHDVIVSIVTAAKKDILLVN-DHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYALQSAAG 426
Cdd:pfam20168  319 RSEILEALKDRLLDPDEKVRLAAVKAIGDLDYETLLHVVsEKLLKTLAERLRDKKPSVRKEALKTLAKLYNVAYGEIEEG 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     427 -KDAAKQIAWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLNAVKALNEMWKCQNLLRHQ 505
Cdd:pfam20168  399 dEEAIEKFGWIPNKILHLYYINDPEIRALVERVLFEYLLPALLDDEERVKRLLTLLSHLDEKAKKAFNAILKRQSRLQKA 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     506 VKDLLDLIKQ------PKTDASVKAIFSKVMVITRNLPDPGKAQDFMKKFTQVleDDEKIRKQLEVLVSPTCSCKQAEGC 579
Cdd:pfam20168  479 LRKFLDLCEKyngvidDEEEEIKKKLEKIIQWLSASFPDPSKAEEDLQKFAKL--NDKRLYKLLRTCIDPDSDYKTIEKA 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     580 VREITKKLGnpkQPTNPFLEMIKFLLERIAPVHIDTESISALIKQVNKSIDGTADDEDEGVptdqairaglELLKVLSFT 659
Cdd:pfam20168  557 RKELLKRLG---DSKSSLLETLKLLLYRSSPLIVNKSSIPALLKLLRSSESGNSELANESS----------ELLKQISKV 623
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     660 HPISFHSAEtfESLLACLKMDDEKVAEAALQIFKNTGSKIEEDFPHIRSaLLPVLHHKSKKGPPRQAKYAIHCIHAIF-S 738
Cdd:pfam20168  624 FPAVFKGHV--KELVKLLKDEDPDVVEDALQALAKVGKKFPEELPTDSK-FIERLKRFALEGTPRQAKYAVRILAALAgD 700
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     739 SKETQFAQIFEPLHKSLDPSNlEHLITPLVTIGHIALLAPDQFaAPLKSLVATFIVKDLLMNDRLPGK--KTTKLWVPDE 816
Cdd:pfam20168  701 EKESVFKDLVEKLLKPLNLAS-PNLLTHLASLGQIALYAPDVF-EDHSEEITSFIVKDLLLKNRTDEEddDDDDEWVDDE 778
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     817 EVSPETMVKIQAIKMMVRWLLGMKN--NHSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKLAQEPC 894
Cdd:pfam20168  779 ELDEECKAKILALKLLVNRLLGLADdeEAEEVAKPVLKLLFAILDNEGELVEDKTTSPAEKSRLRLAAALSLLKLAREPR 858
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     895 YHEIITLEQYQLCALAINDECYQVRQVFAQKLHKGLSRLRLPLEYMAICALCAKDPVKERRAHARQCLVKNINVRREylk 974
Cdd:pfam20168  859 YDKLITPEDFNLLALLVQDPCYEVRERFLKKLHKYLKKNRLPPRFLAIFFLAAHEPEKELKEQVKTWIRSRARRRRK--- 935
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     975 qhaavsEKLLSLLPEYVVPYTIHLLAHDPDYVKVQDIEQLKDVKECLWFVLEiLMAKNENNShaFIRKMVENIKQTKDAQ 1054
Cdd:pfam20168  936 ------AKLKTLLPEYSLPRLIHLLAHHPDFSSDDNEEDLKDFAKYLEFYLD-LVATEENIS--LLYYLAQRIKQVRDAV 1006
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*...
gi 7657269    1055 GPDdakMNEKLYTVCDVAMNII--MSKSTTYSL-ESPKDPVLPARFFT 1099
Cdd:pfam20168 1007 DPD---SSENLYVLSDLAQLIIkrLAKQKGWSLqTYPGKVKLPSDLFK 1051
PDS5 cd19953
Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. ...
31-661 0e+00

Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. Together with WapI and Scc3, it is involved in the release of the cohesin complex from chromosomes during S phase. The core of the cohesin complex consists of a coiled-coiled heterodimer of Smc1 and Smc30, together with Scc1 (also called kleisin). Pds5 interacts with Scc1 via a conserved patch on the surface of its heat repeats. Pds5 also promotes the acetylation of Smc3 that protects cohesin from releasing activity in G2 phase.


Pssm-ID: 410996 [Multi-domain]  Cd Length: 630  Bit Score: 720.08  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269    31 MVRRLKMVVKTFMDMDQDSEEEKELyLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTsPDKLKDIFMFI 110
Cdd:cd19953    1 LLKRLKALHEELSELDQDEVDLESL-EPVAKELVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYT-DDQLKDIFKLF 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   111 TRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGDT 190
Cdd:cd19953   79 ISQLKGLLDPDSPYFSQYFYLLESLAEVKSIVLLLDLPDADELILELFKTFFDLVRDDHPKNVENLMLDILVELIDESES 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   191 VSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSI-----SDLSEHVFDLILELYNI 265
Cdd:cd19953  159 VPQEVLDIILAQFLKKNKSENPPAYRLAVEVCERCSDKLQRYVTQFFSEVLVDASTEEdseedSEELEKAHELIYELWRI 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   266 DSHLLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKDSE-LASQNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNH 344
Cdd:cd19953  239 APELLLSVIPQLEEELKADDVDVRLLATKLLGKMFAEKGSAgFAQTYPSLWKEFLGRFNDKSPEVRLAWVESAKHILLNH 318
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   345 PDLAKDLTEYLKVRSHDPEEAIRHDVIVSIVTAAKKDILL-VNDHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYALQS 423
Cdd:cd19953  319 PDLAEDILEALKKRLLDPDEKVRLAAVKAICDLAYEDLLHkVPEELLSTLAERLRDKKASVRKEALQGLARLYKVAYGEI 398
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   424 AAG-KDAAKQIAWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLNAVKALNEMWKCQNLL 502
Cdd:cd19953  399 EEGdETAIKQFGWIPSKILHLYYINDPEINLLVERVLFEYLLPLSLDDEERVKRLLLLFSSLDDKAKKAFFAILKRQQRL 478
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   503 RHQVKDLLDLIKQPKT------DASVKAIFSKVMVITRNLPDPGKAQDFMKKFTQVleDDEKIRKQLEVLVSPTCSCKQA 576
Cdd:cd19953  479 RKELQKYLDLCEKYNGgviedeEEVEKKLEKLIKWLSASFPDPLKAEEDLQKFAKL--NDRRIYKLLKTCLDPETDYKTV 556
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   577 EGCVREITKKLGNPKqpTNPFLEMIKFLLERIAPVHIDTESISALIKQVNKSidgtaddedEGVPTDQAIRAGLELLKVL 656
Cdd:cd19953  557 RKARKELLKRLGDPS--KASLLETLKILLYRSSPLIFNKSNVPALLKILKSS---------DGSDNEKLASAALELLLEI 625

                 ....*
gi 7657269   657 SFTHP 661
Cdd:cd19953  626 SKVFP 630
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
1215-1410 3.82e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 41.98  E-value: 3.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   1215 RGRKKTPVTEQEEKLGMDdltklvqeQKPKGSQRS----RKRGHTASESDEQQWPEEKrlkedilENEDEQNSP--PKKG 1288
Cdd:PTZ00449  491 KSKKKLAPIEEEDSDKHD--------EPPEGPEASglppKAPGDKEGEEGEHEDSKES-------DEPKEGGKPgeTKEG 555
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   1289 KRGRPPKPLGGGTPKEEPTMKTSKKGSKKKSGPPAPeeeeeeerQSGNTEQKSKSKQHRVSRRAQQRaesPESSAIESTQ 1368
Cdd:PTZ00449  556 EVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDP--------EEPKKPKRPRSAQRPTRPKSPKL---PELLDIPKSP 624
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 7657269   1369 STPQKGRGrPSKTPSPSQPKKNVRVGRSKQAATKENDSSEEV 1410
Cdd:PTZ00449  625 KRPESPKS-PKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKP 665
 
Name Accession Description Interval E-value
PDS5 pfam20168
Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid ...
29-1099 0e+00

Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid cohesion protein PDS5. The large PDS5 molecule is exclusively alpha helical, composed of a large number of HEAT-like repeats and helical extensions/additions that deviate from the HEAT repeat pattern.


Pssm-ID: 466319 [Multi-domain]  Cd Length: 1051  Bit Score: 1074.53  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269      29 EEMVRRLKMVVKTFMDMDQDSEEEKELyLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTsPDKLKDIFM 108
Cdd:pfam20168    1 DELLKRLKALHEELSDLDQEDVDLKSL-DPVAKDLVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYT-DDQLKDIFK 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     109 FITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEG 188
Cdd:pfam20168   79 LFISQLRGLADPDSPYFSQYFYLLESLAEVKSIVLILDLPDADDLITELFRTFFDLVSRPHSKKVENFMLDILSELIDES 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     189 DTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHVFDLILELYNIDSH 268
Cdd:pfam20168  159 DSLPQEVLDLILAQFLRKKKKENPPAFRLAVDVCNACADKLQRYVCQYFSEILLEGDESDLELLKKAHDLILELWRIAPS 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     269 LLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKD-SELASQNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDL 347
Cdd:pfam20168  239 LLLNVIPQLEEELKADDVDIRLLATETLGRMFSEPGgSDLAKQYPSLWKAWLGRFNDKSVAVRIAWVEAAKQILLNHPDL 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     348 AKDLTEYLKVRSHDPEEAIRHDVIVSIVTAAKKDILLVN-DHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYALQSAAG 426
Cdd:pfam20168  319 RSEILEALKDRLLDPDEKVRLAAVKAIGDLDYETLLHVVsEKLLKTLAERLRDKKPSVRKEALKTLAKLYNVAYGEIEEG 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     427 -KDAAKQIAWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLNAVKALNEMWKCQNLLRHQ 505
Cdd:pfam20168  399 dEEAIEKFGWIPNKILHLYYINDPEIRALVERVLFEYLLPALLDDEERVKRLLTLLSHLDEKAKKAFNAILKRQSRLQKA 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     506 VKDLLDLIKQ------PKTDASVKAIFSKVMVITRNLPDPGKAQDFMKKFTQVleDDEKIRKQLEVLVSPTCSCKQAEGC 579
Cdd:pfam20168  479 LRKFLDLCEKyngvidDEEEEIKKKLEKIIQWLSASFPDPSKAEEDLQKFAKL--NDKRLYKLLRTCIDPDSDYKTIEKA 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     580 VREITKKLGnpkQPTNPFLEMIKFLLERIAPVHIDTESISALIKQVNKSIDGTADDEDEGVptdqairaglELLKVLSFT 659
Cdd:pfam20168  557 RKELLKRLG---DSKSSLLETLKLLLYRSSPLIVNKSSIPALLKLLRSSESGNSELANESS----------ELLKQISKV 623
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     660 HPISFHSAEtfESLLACLKMDDEKVAEAALQIFKNTGSKIEEDFPHIRSaLLPVLHHKSKKGPPRQAKYAIHCIHAIF-S 738
Cdd:pfam20168  624 FPAVFKGHV--KELVKLLKDEDPDVVEDALQALAKVGKKFPEELPTDSK-FIERLKRFALEGTPRQAKYAVRILAALAgD 700
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     739 SKETQFAQIFEPLHKSLDPSNlEHLITPLVTIGHIALLAPDQFaAPLKSLVATFIVKDLLMNDRLPGK--KTTKLWVPDE 816
Cdd:pfam20168  701 EKESVFKDLVEKLLKPLNLAS-PNLLTHLASLGQIALYAPDVF-EDHSEEITSFIVKDLLLKNRTDEEddDDDDEWVDDE 778
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     817 EVSPETMVKIQAIKMMVRWLLGMKN--NHSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKLAQEPC 894
Cdd:pfam20168  779 ELDEECKAKILALKLLVNRLLGLADdeEAEEVAKPVLKLLFAILDNEGELVEDKTTSPAEKSRLRLAAALSLLKLAREPR 858
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     895 YHEIITLEQYQLCALAINDECYQVRQVFAQKLHKGLSRLRLPLEYMAICALCAKDPVKERRAHARQCLVKNINVRREylk 974
Cdd:pfam20168  859 YDKLITPEDFNLLALLVQDPCYEVRERFLKKLHKYLKKNRLPPRFLAIFFLAAHEPEKELKEQVKTWIRSRARRRRK--- 935
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269     975 qhaavsEKLLSLLPEYVVPYTIHLLAHDPDYVKVQDIEQLKDVKECLWFVLEiLMAKNENNShaFIRKMVENIKQTKDAQ 1054
Cdd:pfam20168  936 ------AKLKTLLPEYSLPRLIHLLAHHPDFSSDDNEEDLKDFAKYLEFYLD-LVATEENIS--LLYYLAQRIKQVRDAV 1006
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*...
gi 7657269    1055 GPDdakMNEKLYTVCDVAMNII--MSKSTTYSL-ESPKDPVLPARFFT 1099
Cdd:pfam20168 1007 DPD---SSENLYVLSDLAQLIIkrLAKQKGWSLqTYPGKVKLPSDLFK 1051
PDS5 cd19953
Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. ...
31-661 0e+00

Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. Together with WapI and Scc3, it is involved in the release of the cohesin complex from chromosomes during S phase. The core of the cohesin complex consists of a coiled-coiled heterodimer of Smc1 and Smc30, together with Scc1 (also called kleisin). Pds5 interacts with Scc1 via a conserved patch on the surface of its heat repeats. Pds5 also promotes the acetylation of Smc3 that protects cohesin from releasing activity in G2 phase.


Pssm-ID: 410996 [Multi-domain]  Cd Length: 630  Bit Score: 720.08  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269    31 MVRRLKMVVKTFMDMDQDSEEEKELyLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTsPDKLKDIFMFI 110
Cdd:cd19953    1 LLKRLKALHEELSELDQDEVDLESL-EPVAKELVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYT-DDQLKDIFKLF 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   111 TRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGDT 190
Cdd:cd19953   79 ISQLKGLLDPDSPYFSQYFYLLESLAEVKSIVLLLDLPDADELILELFKTFFDLVRDDHPKNVENLMLDILVELIDESES 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   191 VSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSI-----SDLSEHVFDLILELYNI 265
Cdd:cd19953  159 VPQEVLDIILAQFLKKNKSENPPAYRLAVEVCERCSDKLQRYVTQFFSEVLVDASTEEdseedSEELEKAHELIYELWRI 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   266 DSHLLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKDSE-LASQNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNH 344
Cdd:cd19953  239 APELLLSVIPQLEEELKADDVDVRLLATKLLGKMFAEKGSAgFAQTYPSLWKEFLGRFNDKSPEVRLAWVESAKHILLNH 318
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   345 PDLAKDLTEYLKVRSHDPEEAIRHDVIVSIVTAAKKDILL-VNDHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYALQS 423
Cdd:cd19953  319 PDLAEDILEALKKRLLDPDEKVRLAAVKAICDLAYEDLLHkVPEELLSTLAERLRDKKASVRKEALQGLARLYKVAYGEI 398
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   424 AAG-KDAAKQIAWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLNAVKALNEMWKCQNLL 502
Cdd:cd19953  399 EEGdETAIKQFGWIPSKILHLYYINDPEINLLVERVLFEYLLPLSLDDEERVKRLLLLFSSLDDKAKKAFFAILKRQQRL 478
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   503 RHQVKDLLDLIKQPKT------DASVKAIFSKVMVITRNLPDPGKAQDFMKKFTQVleDDEKIRKQLEVLVSPTCSCKQA 576
Cdd:cd19953  479 RKELQKYLDLCEKYNGgviedeEEVEKKLEKLIKWLSASFPDPLKAEEDLQKFAKL--NDRRIYKLLKTCLDPETDYKTV 556
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   577 EGCVREITKKLGNPKqpTNPFLEMIKFLLERIAPVHIDTESISALIKQVNKSidgtaddedEGVPTDQAIRAGLELLKVL 656
Cdd:cd19953  557 RKARKELLKRLGDPS--KASLLETLKILLYRSSPLIFNKSNVPALLKILKSS---------DGSDNEKLASAALELLLEI 625

                 ....*
gi 7657269   657 SFTHP 661
Cdd:cd19953  626 SKVFP 630
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
1215-1410 3.82e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 41.98  E-value: 3.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   1215 RGRKKTPVTEQEEKLGMDdltklvqeQKPKGSQRS----RKRGHTASESDEQQWPEEKrlkedilENEDEQNSP--PKKG 1288
Cdd:PTZ00449  491 KSKKKLAPIEEEDSDKHD--------EPPEGPEASglppKAPGDKEGEEGEHEDSKES-------DEPKEGGKPgeTKEG 555
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7657269   1289 KRGRPPKPLGGGTPKEEPTMKTSKKGSKKKSGPPAPeeeeeeerQSGNTEQKSKSKQHRVSRRAQQRaesPESSAIESTQ 1368
Cdd:PTZ00449  556 EVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDP--------EEPKKPKRPRSAQRPTRPKSPKL---PELLDIPKSP 624
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 7657269   1369 STPQKGRGrPSKTPSPSQPKKNVRVGRSKQAATKENDSSEEV 1410
Cdd:PTZ00449  625 KRPESPKS-PKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKP 665
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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