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Conserved domains on  [gi|7525046|ref|NP_051072|]
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cytochrome f (chloroplast) [Arabidopsis thaliana]

Protein Classification

cytochrome f( domain architecture ID 11414012)

cytochrome f is component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
petA CHL00037
cytochrome f
1-320 0e+00

cytochrome f


:

Pssm-ID: 176978  Cd Length: 320  Bit Score: 704.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046     1 MQTRNTFSWIREEITRSISVSLIIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLANKPVDIEVPQTVLPDTVF 80
Cdd:CHL00037   1 MQNRNTFSWIKKQITRSISVSLMIYIITRTSISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046    81 EAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSE 160
Cdd:CHL00037  81 EAVVKIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQPYSPEKKNILVVGPVPGKKYSE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046   161 ITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNGREVID 240
Cdd:CHL00037 161 IVFPILSPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAAGIVSKILRKEKGGYEITIVDTSDGRQVVD 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046   241 IIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLGSVVLAQIFLVLKKKQFEKVQLSEMNF 320
Cdd:CHL00037 241 IIPPGPELLVSEGESIKLDQPLTNNPNVGGFGQGEAEIVLQDPLRVQGLLFFLASVILAQIFLVLKKKQFEKVQLAEMNF 320
 
Name Accession Description Interval E-value
petA CHL00037
cytochrome f
1-320 0e+00

cytochrome f


Pssm-ID: 176978  Cd Length: 320  Bit Score: 704.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046     1 MQTRNTFSWIREEITRSISVSLIIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLANKPVDIEVPQTVLPDTVF 80
Cdd:CHL00037   1 MQNRNTFSWIKKQITRSISVSLMIYIITRTSISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046    81 EAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSE 160
Cdd:CHL00037  81 EAVVKIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQPYSPEKKNILVVGPVPGKKYSE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046   161 ITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNGREVID 240
Cdd:CHL00037 161 IVFPILSPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAAGIVSKILRKEKGGYEITIVDTSDGRQVVD 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046   241 IIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLGSVVLAQIFLVLKKKQFEKVQLSEMNF 320
Cdd:CHL00037 241 IIPPGPELLVSEGESIKLDQPLTNNPNVGGFGQGEAEIVLQDPLRVQGLLFFLASVILAQIFLVLKKKQFEKVQLAEMNF 320
PetA COG5678
Cytochrome b6f complex cytochrome f subunit, PetA [Energy production and conversion];
33-320 7.90e-180

Cytochrome b6f complex cytochrome f subunit, PetA [Energy production and conversion];


Pssm-ID: 444392  Cd Length: 329  Bit Score: 499.54  E-value: 7.90e-180
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046   33 SSAYPIFAQQNY-ENPREATGRIVCANCHLANKPVDIEVPQTVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLI 111
Cdd:COG5678  42 AAAYPFWAQQTApETPREATGRIVCANCHLAAKPTEVEVPQSVLPDTVFEAVVKIPYDTSVQQVLGDGSKGGLNVGAVLM 121
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046  112 LPEGFELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGR 191
Cdd:COG5678 122 LPEGFKIAPEDRIPEELKEKVGGLYFQPYSEDQENVVIVGPLPGEQYQEIVFPVLSPDPATDKNIHFGKYQVHVGANRGR 201
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046  192 GQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASnGREVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGF 271
Cdd:COG5678 202 GQVYPTGEKSNNNVYNASAAGTITAIAKQEAGGYEVTIQTAD-GEAVVDTIPAGPELIVSEGQAVAAGEALTNNPNVGGF 280
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*....
gi 7525046  272 GQGDAEIVLQDPLRVQGLLFFLGSVVLAQIFLVLKKKQFEKVQLSEMNF 320
Cdd:COG5678 281 GQKDTEIVLQSPARIKGLLAFLAAIMLAQILLVLKKKQVEKVQAAEMNF 329
Apocytochr_F_N pfam16639
Apocytochrome F, N-terminal; This is the N-terminal domain of cytochrome f. It is a soluble ...
37-190 5.14e-113

Apocytochrome F, N-terminal; This is the N-terminal domain of cytochrome f. It is a soluble lumen-side domain.


Pssm-ID: 435483  Cd Length: 154  Bit Score: 323.87  E-value: 5.14e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046     37 PIFAQQNYENPREATGRIVCANCHLANKPVDIEVPQTVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGF 116
Cdd:pfam16639   1 PFWAQQAYENPREATGRIVCANCHLAAKPTEVEVPQSVLPDTVFEAVVKIPYDTSVQQVLADGSKGGLNVGAVLMLPEGF 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7525046    117 ELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRG 190
Cdd:pfam16639  81 KLAPEDRIPEEMKEKTGGLYFQPYSEEKENILIVGPLPGDQYQEIVFPVLSPDPATDKSVHFGKYPVYVGGNRG 154
 
Name Accession Description Interval E-value
petA CHL00037
cytochrome f
1-320 0e+00

cytochrome f


Pssm-ID: 176978  Cd Length: 320  Bit Score: 704.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046     1 MQTRNTFSWIREEITRSISVSLIIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLANKPVDIEVPQTVLPDTVF 80
Cdd:CHL00037   1 MQNRNTFSWIKKQITRSISVSLMIYIITRTSISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046    81 EAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSE 160
Cdd:CHL00037  81 EAVVKIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQPYSPEKKNILVVGPVPGKKYSE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046   161 ITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNGREVID 240
Cdd:CHL00037 161 IVFPILSPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAAGIVSKILRKEKGGYEITIVDTSDGRQVVD 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046   241 IIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLGSVVLAQIFLVLKKKQFEKVQLSEMNF 320
Cdd:CHL00037 241 IIPPGPELLVSEGESIKLDQPLTNNPNVGGFGQGEAEIVLQDPLRVQGLLFFLASVILAQIFLVLKKKQFEKVQLAEMNF 320
PetA COG5678
Cytochrome b6f complex cytochrome f subunit, PetA [Energy production and conversion];
33-320 7.90e-180

Cytochrome b6f complex cytochrome f subunit, PetA [Energy production and conversion];


Pssm-ID: 444392  Cd Length: 329  Bit Score: 499.54  E-value: 7.90e-180
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046   33 SSAYPIFAQQNY-ENPREATGRIVCANCHLANKPVDIEVPQTVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLI 111
Cdd:COG5678  42 AAAYPFWAQQTApETPREATGRIVCANCHLAAKPTEVEVPQSVLPDTVFEAVVKIPYDTSVQQVLGDGSKGGLNVGAVLM 121
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046  112 LPEGFELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGR 191
Cdd:COG5678 122 LPEGFKIAPEDRIPEELKEKVGGLYFQPYSEDQENVVIVGPLPGEQYQEIVFPVLSPDPATDKNIHFGKYQVHVGANRGR 201
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046  192 GQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASnGREVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGF 271
Cdd:COG5678 202 GQVYPTGEKSNNNVYNASAAGTITAIAKQEAGGYEVTIQTAD-GEAVVDTIPAGPELIVSEGQAVAAGEALTNNPNVGGF 280
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*....
gi 7525046  272 GQGDAEIVLQDPLRVQGLLFFLGSVVLAQIFLVLKKKQFEKVQLSEMNF 320
Cdd:COG5678 281 GQKDTEIVLQSPARIKGLLAFLAAIMLAQILLVLKKKQVEKVQAAEMNF 329
PRK02693 PRK02693
apocytochrome f; Reviewed
19-320 2.27e-174

apocytochrome f; Reviewed


Pssm-ID: 179460  Cd Length: 312  Bit Score: 485.26  E-value: 2.27e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046    19 SVSLIIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLANKPVDIEVPQTVLPDTVFEAVVKIPYDMQLKQVLAN 98
Cdd:PRK02693  12 SLLLLASDLILPQSAAAYPFWAQQNYESPREATGKIVCANCHLAQKPTEVEVPQSVLPDSVFKAVVKIPYDTDVQQVGAD 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046    99 GKKGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHF 178
Cdd:PRK02693  92 GSKVGLNVGAVVMLPDGFKLAPQDRWTEEIKEETEGVYFTPYSEDQENIILVGPLPGDQYQEIVFPVLSPDPATDKNIHF 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046   179 LKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDAsNGREVIDIIPRGLELLVSEGESIKL 258
Cdd:PRK02693 172 GKYSVHVGGNRGRGQVYPTGEKSNNNVFTASAAGTITSIETGEDGGYVVTITTE-DGEAVTETIPAGPELIVKEGDTVEA 250
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7525046   259 DQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLGSVVLAQIFLVLKKKQFEKVQLSEMNF 320
Cdd:PRK02693 251 GDPLTNDPNVGGFGQLDTEIVLQSPVRVKGLIAFFAAVMLAQILLVLKKKQVEKVQAAEGNF 312
Apocytochr_F_N pfam16639
Apocytochrome F, N-terminal; This is the N-terminal domain of cytochrome f. It is a soluble ...
37-190 5.14e-113

Apocytochrome F, N-terminal; This is the N-terminal domain of cytochrome f. It is a soluble lumen-side domain.


Pssm-ID: 435483  Cd Length: 154  Bit Score: 323.87  E-value: 5.14e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046     37 PIFAQQNYENPREATGRIVCANCHLANKPVDIEVPQTVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGF 116
Cdd:pfam16639   1 PFWAQQAYENPREATGRIVCANCHLAAKPTEVEVPQSVLPDTVFEAVVKIPYDTSVQQVLADGSKGGLNVGAVLMLPEGF 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7525046    117 ELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRG 190
Cdd:pfam16639  81 KLAPEDRIPEEMKEKTGGLYFQPYSEEKENILIVGPLPGDQYQEIVFPVLSPDPATDKSVHFGKYPVYVGGNRG 154
Apocytochr_F_C pfam01333
Apocytochrome F, C-terminal; This is a sub-family of cytochrome C. See pfam00034.
202-317 1.20e-62

Apocytochrome F, C-terminal; This is a sub-family of cytochrome C. See pfam00034.


Pssm-ID: 426206  Cd Length: 115  Bit Score: 194.33  E-value: 1.20e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525046    202 NNTVYNATAGGIISKILRKEKGGYEITIVDAsNGREVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQ 281
Cdd:pfam01333   1 NNNVFTASAAGTITKITKTEDGGYEVTITTE-DGETVVETIPAGPELIVSEGQTVKAGQALTNNPNVGGFGQKDTEIVLQ 79
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 7525046    282 DPLRVQGLLFFLGSVVLAQIFLVLKKKQFEKVQLSE 317
Cdd:pfam01333  80 SPARIKGLLAFFAAVMLAQILLVLKKKQVEKVQAAE 115
PRK00566 PRK00566
DNA-directed RNA polymerase subunit beta'; Provisional
212-288 3.96e-04

DNA-directed RNA polymerase subunit beta'; Provisional


Pssm-ID: 234794 [Multi-domain]  Cd Length: 1156  Bit Score: 41.98  E-value: 3.96e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7525046    212 GIISKIlRKEKGGYEITIVDaSNGREVIDIIPRGLELLVSEGESIKLDQPLTsnpnvggfgqgDAEIVLQDPLRVQG 288
Cdd:PRK00566  936 GTVSFG-KETKGKRRIVITP-DDGEEREYLIPKGKHLLVQEGDHVEAGDKLT-----------DGSIDPHDILRVLG 999
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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