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Conserved domains on  [gi|7525035|ref|NP_051061|]
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ribosomal protein S4 (chloroplast) [Arabidopsis thaliana]

Protein Classification

30S ribosomal protein S4( domain architecture ID 11414071)

30S ribosomal protein S4 binds directly to 16S rRNA and plays an important role in translational accuracy

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-201 1.89e-143

ribosomal protein S4; Reviewed


:

Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 397.28  E-value: 1.89e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035     1 MSRYRGPRFKKIRRLGALPGLTSKRPKAGSDLRNQSRSVKKSQYRIRLEEKQKLRFHYGLTEHQLLKYVRIAGKAKGSTG 80
Cdd:CHL00113   1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQSRSGKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAKGSTG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035    81 QVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSAPEEL 160
Cdd:CHL00113  81 QVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSPREEL 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 7525035   161 PNHLTLHTFQYEGLVNQIIDRKCVGLKINELLVVEYYSRQT 201
Cdd:CHL00113 161 PNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
 
Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-201 1.89e-143

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 397.28  E-value: 1.89e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035     1 MSRYRGPRFKKIRRLGALPGLTSKRPKAGSDLRNQSRSVKKSQYRIRLEEKQKLRFHYGLTEHQLLKYVRIAGKAKGSTG 80
Cdd:CHL00113   1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQSRSGKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAKGSTG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035    81 QVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSAPEEL 160
Cdd:CHL00113  81 QVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSPREEL 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 7525035   161 PNHLTLHTFQYEGLVNQIIDRKCVGLKINELLVVEYYSRQT 201
Cdd:CHL00113 161 PNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-199 1.52e-78

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 233.43  E-value: 1.52e-78
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035    1 MSRYRGPRFKKIRRLGALPGLTSKRPKAgSDLRNQ------SRSVKKSQYRIRLEEKQKLRFHYGLTEHQLLKYVRIAGK 74
Cdd:COG0522   1 MARYTGPKCKLCRREGVKLFLKGERKCA-LERRPYppgqhgQRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFEEAAR 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035   75 AKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDS 154
Cdd:COG0522  80 RKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKEALES 159

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*
gi 7525035  155 SAPEELPNHLTLHTFQYEGLVNQIIDRKCVGLKINELLVVEYYSR 199
Cdd:COG0522 160 AEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-199 5.29e-73

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 219.10  E-value: 5.29e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035      3 RYRGPRFKKIRRLGA-LPG----LTSKRPKAgsDLRNQSRSVKKSQYRIRLEEKQKLRFHYGLTEHQLLKYVRIAGKAKG 77
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVnLFGksrkLLLKRKYP--PGQHGQRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLKG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035     78 STGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSAP 157
Cdd:TIGR01017  79 NTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETNGQ 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 7525035    158 EELPNHLTLHTFQYEGLVNQIIDRKCVGLKINELLVVEYYSR 199
Cdd:TIGR01017 159 RNIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 89-148 3.41e-21

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 82.68  E-value: 3.41e-21
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035   89 MRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLV 148
Cdd:cd00165   1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIV 60
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-88 1.58e-18

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 76.43  E-value: 1.58e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035      3 RYRGPRFKKIRRLGALPGLTSKRPKAGSDLRN---------QSRSVKK-SQYRIRLEEKQKLRFHYGLTEHQLLKYVRIA 72
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKGRCHRELKVAQNrreypkypgQHGKIRKlSEYLLQLREKQKVRRKYGLLEKQLRKLYDMG 80

                          90
                  ....*....|....*.
gi 7525035     73 GKAKGSTGQVLLQLLE 88
Cdd:pfam00163  81 LKLKGVTGENLLQLLE 96
S4 smart00363
S4 RNA-binding domain;
89-147 9.48e-18

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 73.40  E-value: 9.48e-18
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 7525035      89 MRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTL 147
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELKRLK 59
 
Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-201 1.89e-143

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 397.28  E-value: 1.89e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035     1 MSRYRGPRFKKIRRLGALPGLTSKRPKAGSDLRNQSRSVKKSQYRIRLEEKQKLRFHYGLTEHQLLKYVRIAGKAKGSTG 80
Cdd:CHL00113   1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQSRSGKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAKGSTG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035    81 QVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSAPEEL 160
Cdd:CHL00113  81 QVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSPREEL 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 7525035   161 PNHLTLHTFQYEGLVNQIIDRKCVGLKINELLVVEYYSRQT 201
Cdd:CHL00113 161 PNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-199 1.01e-81

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 241.16  E-value: 1.01e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035     1 MSRYRGPRFKKIRRLG-ALPGLT---SKRPKAGSDLRNQSRSVKKSQYRIRLEEKQKLRFHYGLTEHQLLKYVRIAGKAK 76
Cdd:PRK05327   1 MARYTGPKCKLSRRLGvDLFKSGkrcLKRKYPPGQHGQRRRKPKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKEAARRK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035    77 GSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSA 156
Cdd:PRK05327  81 GNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEALELAE 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 7525035   157 PEELPNHLTLHTFQYEGLVNQIIDRKCVGLKINELLVVEYYSR 199
Cdd:PRK05327 161 RRGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-199 1.52e-78

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 233.43  E-value: 1.52e-78
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035    1 MSRYRGPRFKKIRRLGALPGLTSKRPKAgSDLRNQ------SRSVKKSQYRIRLEEKQKLRFHYGLTEHQLLKYVRIAGK 74
Cdd:COG0522   1 MARYTGPKCKLCRREGVKLFLKGERKCA-LERRPYppgqhgQRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFEEAAR 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035   75 AKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDS 154
Cdd:COG0522  80 RKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKEALES 159

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*
gi 7525035  155 SAPEELPNHLTLHTFQYEGLVNQIIDRKCVGLKINELLVVEYYSR 199
Cdd:COG0522 160 AEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-199 5.29e-73

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 219.10  E-value: 5.29e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035      3 RYRGPRFKKIRRLGA-LPG----LTSKRPKAgsDLRNQSRSVKKSQYRIRLEEKQKLRFHYGLTEHQLLKYVRIAGKAKG 77
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVnLFGksrkLLLKRKYP--PGQHGQRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLKG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035     78 STGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSAP 157
Cdd:TIGR01017  79 NTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETNGQ 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 7525035    158 EELPNHLTLHTFQYEGLVNQIIDRKCVGLKINELLVVEYYSR 199
Cdd:TIGR01017 159 RNIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 89-148 3.41e-21

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 82.68  E-value: 3.41e-21
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035   89 MRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLV 148
Cdd:cd00165   1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIV 60
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-88 1.58e-18

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 76.43  E-value: 1.58e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035      3 RYRGPRFKKIRRLGALPGLTSKRPKAGSDLRN---------QSRSVKK-SQYRIRLEEKQKLRFHYGLTEHQLLKYVRIA 72
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKGRCHRELKVAQNrreypkypgQHGKIRKlSEYLLQLREKQKVRRKYGLLEKQLRKLYDMG 80

                          90
                  ....*....|....*.
gi 7525035     73 GKAKGSTGQVLLQLLE 88
Cdd:pfam00163  81 LKLKGVTGENLLQLLE 96
S4 smart00363
S4 RNA-binding domain;
89-147 9.48e-18

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 73.40  E-value: 9.48e-18
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 7525035      89 MRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTL 147
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELKRLK 59
S4 pfam01479
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ...
 89-136 2.73e-17

S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.


Pssm-ID: 396182 [Multi-domain]  Cd Length: 48  Bit Score: 72.14  E-value: 2.73e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 7525035     89 MRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSYRCKPRDII 136
Cdd:pfam01479   1 RRLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDEI 48
rps4p PRK04051
30S ribosomal protein S4P; Validated
 85-128 1.12e-14

30S ribosomal protein S4P; Validated


Pssm-ID: 179730 [Multi-domain]  Cd Length: 177  Bit Score: 68.74  E-value: 1.12e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 7525035    85 QLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
Cdd:PRK04051  99 DILERRLQTIVYRKGLARTPKQARQFIVHGHIAVNGRRVTSPSY 142
uS4_arch TIGR01018
ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein ...
 87-128 6.40e-12

ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273397 [Multi-domain]  Cd Length: 162  Bit Score: 60.90  E-value: 6.40e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 7525035     87 LEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
Cdd:TIGR01018 102 LERRLQTQVYKKGLARTIHQARQLIVHGHIAVNGRVVTSPSY 143
PTZ00155 PTZ00155
40S ribosomal protein S9; Provisional
 49-128 1.87e-07

40S ribosomal protein S9; Provisional


Pssm-ID: 185484 [Multi-domain]  Cd Length: 181  Bit Score: 48.92  E-value: 1.87e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035    49 EEKQKLRFHYGLTEHQLLkyvriagkakgstgqvllqllEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
Cdd:PTZ00155  88 EDERKLDYVLGLTVEKLL---------------------ERRLQTKVFKLGLAKSIHHARVLIRQRHIRVGKQIVDIPSF 146
PLN00189 PLN00189
40S ribosomal protein S9; Provisional
 85-128 3.50e-07

40S ribosomal protein S9; Provisional


Pssm-ID: 177783 [Multi-domain]  Cd Length: 194  Bit Score: 48.59  E-value: 3.50e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 7525035    85 QLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
Cdd:PLN00189 105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGKQIVNVPSF 148
YqxC COG1189
Predicted rRNA methylase YqxC, contains S4 and FtsJ domains [Translation, ribosomal structure ...
 89-145 1.19e-06

Predicted rRNA methylase YqxC, contains S4 and FtsJ domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440802 [Multi-domain]  Cd Length: 248  Bit Score: 47.36  E-value: 1.19e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525035   89 MRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSYRCKPRDIITVKDEQN---SR 145
Cdd:COG1189   1 ERLDVLLVERGLAESREKAQRLIMAGRVLVNGQVVDKPGTKVPEDAEIEVKGEELpyvSR 60
HslR COG1188
Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain [Translation, ribosomal ...
 89-158 4.87e-03

Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440801  Cd Length: 120  Bit Score: 35.58  E-value: 4.87e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7525035   89 MRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDiPSYRCKPRDIITVKDEQNSRTL-VQNLLDS--SAPE 158
Cdd:COG1188   5 MRLDKWLWAARFFKTRSLAAEACDGGRVRVNGQRAK-PSREVKVGDVLTIRQGGRERVVrVLALSERrgPAPE 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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