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Conserved domains on  [gi|157011953|ref|NP_051060|]
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photosystem I assembly protein Ycf3 (chloroplast) [Arabidopsis thaliana]

Protein Classification

photosystem I assembly protein Ycf3( domain architecture ID 11414006)

photosystem I assembly protein Ycf3 is essential for the assembly of the photosystem I (PSI) complex; may act as a chaperone-like factor to guide the assembly of the PSI subunits

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-168 5.82e-132

photosystem I assembly protein Ycf3


:

Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 365.48  E-value: 5.82e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953   1 MPRSRINGNFIDKTFTIVADILLRVIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:CHL00033   1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNW 160
Cdd:CHL00033  81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                 ....*...
gi 157011953 161 LTITRRFE 168
Cdd:CHL00033 161 LKITGRFE 168
 
Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-168 5.82e-132

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 365.48  E-value: 5.82e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953   1 MPRSRINGNFIDKTFTIVADILLRVIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:CHL00033   1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNW 160
Cdd:CHL00033  81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                 ....*...
gi 157011953 161 LTITRRFE 168
Cdd:CHL00033 161 LKITGRFE 168
Ycf3 COG5713
Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; ...
 1-168 1.77e-100

Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf3, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444423  Cd Length: 173  Bit Score: 286.23  E-value: 1.77e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953   1 MPRSRINGNFIDKTFTIVADILLRVIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:COG5713    1 MPRTQRNDNFIDKSFTVMADLILKMLPTNKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPYDRSYILYNMGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNW 160
Cdd:COG5713   81 IHASNGEHEKALEYYHQALELNPRMPQALNNIAVIYHYQGEKAKEAGDQDEAEALFDKAAEYWKRAIRLAPNNYIEAQNW 160


                 ....*...
gi 157011953 161 LTITRRFE 168
Cdd:COG5713  161 LKTTGRSK 168
TPR_1 pfam00515
Tetratricopeptide repeat;
72-103 1.01e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.48  E-value: 1.01e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 157011953   72 SYILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 74-103 9.46e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 9.46e-05
                           10        20        30
                   ....*....|....*....|....*....|
gi 157011953    74 ILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 31-153 1.25e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.51  E-value: 1.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953   31 GEKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDP-YDRSYIlyNIGLIHTSNGEHTKALEYYFRALERNPflpqaf 109
Cdd:TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKS--IELDPrVTQSYI--KRASMNLELGDPDKAEEDFDKALKLNS------ 396

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 157011953  110 NNMAVICHyRGEQAIQQGDsemaeawFAQAAEYWKQAITLTPGN 153
Cdd:TIGR00990 397 EDPDIYYH-RAQLHFIKGE-------FAQAGKDYQKSIDLDPDF 432
 
Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-168 5.82e-132

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 365.48  E-value: 5.82e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953   1 MPRSRINGNFIDKTFTIVADILLRVIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:CHL00033   1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNW 160
Cdd:CHL00033  81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                 ....*...
gi 157011953 161 LTITRRFE 168
Cdd:CHL00033 161 LKITGRFE 168
Ycf3 COG5713
Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; ...
 1-168 1.77e-100

Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf3, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444423  Cd Length: 173  Bit Score: 286.23  E-value: 1.77e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953   1 MPRSRINGNFIDKTFTIVADILLRVIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:COG5713    1 MPRTQRNDNFIDKSFTVMADLILKMLPTNKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPYDRSYILYNMGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNW 160
Cdd:COG5713   81 IHASNGEHEKALEYYHQALELNPRMPQALNNIAVIYHYQGEKAKEAGDQDEAEALFDKAAEYWKRAIRLAPNNYIEAQNW 160


                 ....*...
gi 157011953 161 LTITRRFE 168
Cdd:COG5713  161 LKTTGRSK 168
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 1-166 2.57e-99

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 283.49  E-value: 2.57e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953   1 MPRSRINGNFIDKTFTIVADILLRVIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:PRK02603   1 MPRTQRNDNFIDKSFTVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNW 160
Cdd:PRK02603  81 IYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNW 160


                 ....*.
gi 157011953 161 LTITRR 166
Cdd:PRK02603 161 LKTTGR 166
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-153 3.93e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 62.33  E-value: 3.93e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  33 KEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNM 112
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKA--LELDP-DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157011953 113 AVICHYRG--EQAIQ------QGDSEMAEAW------------FAQAAEYWKQAITLTPGN 153
Cdd:COG0457   83 GLALQALGryEEALEdydkalELDPDDAEALynlglallelgrYDEAIEAYERALELDPDD 143
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 34-166 4.21e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.09  E-value: 4.21e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  34 EAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMA 113
Cdd:COG3914  111 NAEALFNLGNLLLALGRLEEALAALRRA--LALNP-DFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 157011953 114 VICHYRGEqaiqqgdsemaeawFAQAAEYWKQAITLTPGNYIEAQNWLTITRR 166
Cdd:COG3914  188 NALQDLGR--------------LEEAIAAYRRALELDPDNADAHSNLLFALRQ 226
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
19-142 9.01e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 60.70  E-value: 9.01e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  19 ADILLRVIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRA 98
Cdd:COG4785   57 ALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQA--LELDP-DLAEAYNNRGLAYLLLGDYDAALEDFDRA 133

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 157011953  99 LERNPFLPQAFNNMAVICHYRgeqaiqqGDSEMAEAWFAQAAEY 142
Cdd:COG4785  134 LELDPDYAYAYLNRGIALYYL-------GRYELAIADLEKALEL 170
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 32-161 2.61e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 57.70  E-value: 2.61e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  32 EKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI----GLIHTSNGEHTKALEYYFRALERNPFLPQ 107
Cdd:COG3914   34 AAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALlelaALLLQALGRYEEALALYRRALALNPDNAE 113

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157011953 108 AFNNMAVICHYRG---------EQAIQQgDSEMAEAW------------FAQAAEYWKQAITLTPgNYIEAQNWL 161
Cdd:COG3914  114 ALFNLGNLLLALGrleealaalRRALAL-NPDFAEAYlnlgealrrlgrLEEAIAALRRALELDP-DNAEALNNL 186
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 32-141 1.24e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.20  E-value: 1.24e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  32 EKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNN 111
Cdd:COG5010   51 AKAFAIESPSDNLYNKLGDFEESLALLEQA--LQLDPNN-PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSN 127

                         90       100       110
                 ....*....|....*....|....*....|
gi 157011953 112 MAVIchyrgeqAIQQGDSEMAEAWFAQAAE 141
Cdd:COG5010  128 LAAL-------LLSLGQDDEAKAALQRALG 150
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 42-153 2.93e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.32  E-value: 2.93e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  42 GMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVIchyrge 121
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKA--LRLDP-DNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA------ 94

                         90       100       110
                 ....*....|....*....|....*....|..
gi 157011953 122 qAIQQGDsemaeawFAQAAEYWKQAITLTPGN 153
Cdd:COG4235   95 -AFQQGD-------YAEAIAAWQKLLALLPAD 118
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
35-161 4.24e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.86  E-value: 4.24e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  35 AFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG0457   76 AEALNNLGLALQALGRYEEALEDYDKA--LELDPDD-AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGI 152

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 157011953 115 ICHyrgeqaiQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNWL 161
Cdd:COG0457  153 ALE-------KLGRYEEALELLEKLEAAALAALLAAALGEAALALAA 192
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
45-154 1.21e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.78  E-value: 1.21e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  45 AQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYyFRALERNPFLPQAFNNMAVICHYRGEqai 124
Cdd:COG3063    2 YLKLGDLEEAEEYYEKA--LELDP-DNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGD--- 74

                         90       100       110
                 ....*....|....*....|....*....|
gi 157011953 125 qqgdsemaeawFAQAAEYWKQAITLTPGNY 154
Cdd:COG3063   75 -----------YDEALAYLERALELDPSAL 93
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
33-161 3.56e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 51.07  E-value: 3.56e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  33 KEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPY----DRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA 108
Cdd:COG4785   30 LFAAVLALAIALADLALALAAAALAAAALAAERIDRAlalpDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEA 109

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 157011953 109 FNNMAVIchyrgeqAIQQGDSEMAEAWFAQAAE--------YWKQAITLTP-GNYIEAQNWL 161
Cdd:COG4785  110 YNNRGLA-------YLLLGDYDAALEDFDRALEldpdyayaYLNRGIALYYlGRYELAIADL 164
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 20-153 1.35e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.73  E-value: 1.35e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  20 DILLRVIPTTSGEKEAftYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRAL 99
Cdd:COG2956   29 DLLEEALELDPETVEA--HLALGNLYRRRGEYDRAIRIHQKL--LERDP-DRAEALLELAQDYLKAGLLDRAEELLEKLL 103

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 157011953 100 ERNPFLPQAFNNMAVICHYRG--EQAIQ-------------QGDSEMAEAWFAQ-----AAEYWKQAITLTPGN 153
Cdd:COG2956  104 ELDPDDAEALRLLAEIYEQEGdwEKAIEvlerllklgpenaHAYCELAELYLEQgdydeAIEALEKALKLDPDC 177
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 35-153 2.76e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.11  E-value: 2.76e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  35 AFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKA--LELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 157011953 115 IchyrgeqAIQQGDsemaeawFAQAAEYWKQAITLTPGN 153
Cdd:COG4783   81 A-------LLKAGD-------YDEALALLEKALKLDPEH 105
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 42-153 4.69e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.72  E-value: 4.69e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  42 GMSAQSEGNYAEALQNYYEAMRLeiDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGE 121
Cdd:COG4783   45 GEILLQLGDLDEAIVLLHEALEL--DP-DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGR 121

                         90       100       110
                 ....*....|....*....|....*....|..
gi 157011953 122 qaiqqgdsemaeawFAQAAEYWKQAITLTPGN 153
Cdd:COG4783  122 --------------PDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 31-141 5.44e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.80  E-value: 5.44e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  31 GEKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFN 110
Cdd:COG2956  140 GPENAHAYCELAELYLEQGDYDEAIEALEKA--LKLDP-DCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALP 216

                         90       100       110
                 ....*....|....*....|....*....|.
gi 157011953 111 NMAVIchyrgeqAIQQGDSEMAEAWFAQAAE 141
Cdd:COG2956  217 RLAEL-------YEKLGDPEEALELLRKALE 240
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
81-161 5.57e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 5.57e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRG--EQAIQ-----QGDSEMAEAWFAQAAEYWKQaitltpGN 153
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGryDEAIAlekalKLDPNNAEALLNLAELLLEL------GD 74


                 ....*...
gi 157011953 154 YIEAQNWL 161
Cdd:COG3063   75 YDEALAYL 82
TPR_1 pfam00515
Tetratricopeptide repeat;
72-103 1.01e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.48  E-value: 1.01e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 157011953   72 SYILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 20-157 1.26e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.95  E-value: 1.26e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  20 DILLRVIPTTSGEKEAftYYRDGMSAQSEGNYAEALQnYYEAMrLEIDPYDrSYILYNIGLIHTSNGEHTKALEYYFRAL 99
Cdd:COG2956   97 ELLEKLLELDPDDAEA--LRLLAEIYEQEGDWEKAIE-VLERL-LKLGPEN-AHAYCELAELYLEQGDYDEAIEALEKAL 171

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 157011953 100 ERNPFLPQAFNNMAVIchyrgeqAIQQGDsemaeawFAQAAEYWKQAITLTPgNYIEA 157
Cdd:COG2956  172 KLDPDCARALLLLAEL-------YLEQGD-------YEEAIAALERALEQDP-DYLPA 214
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 38-108 5.15e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.36  E-value: 5.15e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157011953  38 YYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA 108
Cdd:COG1729   33 LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 74-103 9.46e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 9.46e-05
                           10        20        30
                   ....*....|....*....|....*....|
gi 157011953    74 ILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 51-159 1.09e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.33  E-value: 1.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEqaiqqgdse 130
Cdd:COG5010   33 GANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD--------- 103

                         90       100
                 ....*....|....*....|....*....
gi 157011953 131 maeawFAQAAEYWKQAITLTPGNYIEAQN 159
Cdd:COG5010  104 -----KDEAKEYYEKALALSPDNPNAYSN 127
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 31-153 1.25e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.51  E-value: 1.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953   31 GEKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDP-YDRSYIlyNIGLIHTSNGEHTKALEYYFRALERNPflpqaf 109
Cdd:TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKS--IELDPrVTQSYI--KRASMNLELGDPDKAEEDFDKALKLNS------ 396

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 157011953  110 NNMAVICHyRGEQAIQQGDsemaeawFAQAAEYWKQAITLTPGN 153
Cdd:TIGR00990 397 EDPDIYYH-RAQLHFIKGE-------FAQAGKDYQKSIDLDPDF 432
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 42-106 1.25e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 38.47  E-value: 1.25e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157011953   42 GMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLP 106
Cdd:pfam13432   4 ARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR_12 pfam13424
Tetratricopeptide repeat;
35-101 2.43e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.75  E-value: 2.43e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 157011953   35 AFTYYRDGMSAQSEGNYAEALQNYYEAMRL---EIDPYDRSY--ILYNIGLIHTSNGEHTKALEYYFRALER 101
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrLLGPDHPLTatTLLNLGRLYLELGRYEEALELLERALAL 74
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 19-153 2.71e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.45  E-value: 2.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953   19 ADILLRVIPttsgeKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILyniGLIHTSNGEHTKALEYYFRA 98
Cdd:TIGR02917 250 ADALLKKAP-----NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLA---GASEYQLGNLEQAYQYLNQI 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953   99 LERNPFLPQAFNNMAVI---------------------------CHYRGEQAIQQGDSEMAEAWFAQAAEywkqaitLTP 151
Cdd:TIGR02917 322 LKYAPNSHQARRLLASIqlrlgrvdeaiatlspalgldpddpaaLSLLGEAYLALGDFEKAAEYLAKATE-------LDP 394


                  ..
gi 157011953  152 GN 153
Cdd:TIGR02917 395 EN 396
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
33-107 4.29e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.84  E-value: 4.29e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157011953  33 KEAFTYYRDGMSAQSEGNYAEALQnYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQ 107
Cdd:COG3063   24 DNADALNNLGLLLLEQGRYDEAIA-LEKA--LKLDP-NNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 48-141 5.35e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.66  E-value: 5.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  48 EGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNP---FLPQAFNNMAVIchyrgeqAI 124
Cdd:COG1729    6 AGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLS-------YL 78

                         90
                 ....*....|....*..
gi 157011953 125 QQGDSEMAEAWFAQAAE 141
Cdd:COG1729   79 ELGDYDKARATLEELIK 95
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 42-141 6.82e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.94  E-value: 6.82e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  42 GMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFnnmavichYRGE 121
Cdd:COG2956  185 AELYLEQGDYEEAIAALERA--LEQDP-DYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL--------ALAD 253

                         90       100
                 ....*....|....*....|
gi 157011953 122 QAIQQGDSEMAEAWFAQAAE 141
Cdd:COG2956  254 LLERKEGLEAALALLERQLR 273
TPR_12 pfam13424
Tetratricopeptide repeat;
70-145 9.51e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.21  E-value: 9.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953   70 DRSYILYNIGLIHTSNGEHTKALEYYFRALER--------NPFLPQAFNNMAVICHyrgeqaiQQGDSEMAEAWFAQAAE 141
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYL-------ELGRYEEALELLERALA 73


                  ....
gi 157011953  142 YWKQ 145
Cdd:pfam13424  74 LAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 33-103 9.71e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 37.63  E-value: 9.71e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157011953  33 KEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:COG5010   86 NNPELYYNLALLYSRSGDKDEAKEYYEKA--LALSPDN-PNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 42-149 1.85e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 37.76  E-value: 1.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953   42 GMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPflpqafNNMAVICHYRGE 121
Cdd:TIGR02917 472 GAIYLGKGDLAKAREAFEKA--LSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP------KNLRAILALAGL 542

                          90       100
                  ....*....|....*....|....*...
gi 157011953  122 QAiQQGDSEMAEAWFAQAAEYWKQAITL 149
Cdd:TIGR02917 543 YL-RTGNEEEAVAWLEKAAELNPQEIEP 569
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
35-147 2.06e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 37.20  E-value: 2.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157011953  35 AFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG4785  107 AEAYNNRGLAYLLLGDYDAALEDFDRA--LELDP-DYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYL 183

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 157011953 115 IchyRGEQAIQQGDSEMAEAWF---------AQAAEYWKQAI 147
Cdd:COG4785  184 A---ERKLDPEKALALLLEDWAtayllqgdtEEARELFKLAL 222
EST1_DNA_bind pfam10373
Est1 DNA/RNA binding domain; Est1 is a protein which recruits or activates telomerase at the ...
 76-115 4.89e-03

Est1 DNA/RNA binding domain; Est1 is a protein which recruits or activates telomerase at the site of polymerization. This is the DNA/RNA binding domain of EST1.


Pssm-ID: 431239  Cd Length: 279  Bit Score: 36.24  E-value: 4.89e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 157011953   76 YN-IGLIHTSNGEHTKALEYYFRAL-ERNPFlPQAFNNMAVI 115
Cdd:pfam10373  19 YNqLGVIALYVGNHLDAVYYFLRSLlSRNPF-PTAKNNLELL 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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