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Conserved domains on  [gi|11467444|ref|NP_043590|]
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ribosomal protein S7 (chloroplast) [Trieres chinensis]

Protein Classification

uS7_Chloroplast domain-containing protein( domain architecture ID 10201919)

uS7_Chloroplast domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 9-154 4.95e-80

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


:

Pssm-ID: 271250  Cd Length: 146  Bit Score: 233.32  E-value: 4.95e-80
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444   9 KRFPEADSTYNSYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRIGGSTYQVP 88
Cdd:cd14871   1 KRPIKPDPIYNSRLVNMLVNRILKSGKKSLAYRIVYEALKEIKQKTKQDPLEVLEQAIRNVTPLVEVKARRVGGSTYQVP 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 11467444  89 VEVSGFRATNLSLRWIIQYSRQRVGRTMSIKLANEIIDTANDIGNTIKKKEETHKMQMPIKHLHIF 154
Cdd:cd14871  81 VEVRSERGTALAIRWLLKASRKRSGRSMASKLANEIIDAAKNTGNAIRKKEETHRMAEANKAFAHF 146
 
Name Accession Description Interval E-value
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 9-154 4.95e-80

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 233.32  E-value: 4.95e-80
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444   9 KRFPEADSTYNSYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRIGGSTYQVP 88
Cdd:cd14871   1 KRPIKPDPIYNSRLVNMLVNRILKSGKKSLAYRIVYEALKEIKQKTKQDPLEVLEQAIRNVTPLVEVKARRVGGSTYQVP 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 11467444  89 VEVSGFRATNLSLRWIIQYSRQRVGRTMSIKLANEIIDTANDIGNTIKKKEETHKMQMPIKHLHIF 154
Cdd:cd14871  81 VEVRSERGTALAIRWLLKASRKRSGRSMASKLANEIIDAAKNTGNAIRKKEETHRMAEANKAFAHF 146
rps7 CHL00053
ribosomal protein S7
 1-154 1.70e-79

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 232.08  E-value: 1.70e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444    1 MSRRNISKKRFPEADSTYNSYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRI 80
Cdd:CHL00053   1 MSRRGTAKKRTAKPDPIYRNRLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKTEKNPLSVLRQAIRNVTPDVEVKARRV 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 11467444   81 GGSTYQVPVEVSGFRATNLSLRWIIQYSRQRVGRTMSIKLANEIIDTANDIGNTIKKKEETHKMQMPIKHLHIF 154
Cdd:CHL00053  81 GGSTYQVPIEIGSTRGKALAIRWLLKASRKRSGRNMAFKLSSELVDAAKGSGNAIRKKEETHRMAEANRAFAHF 154
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 1-144 4.69e-73

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 215.69  E-value: 4.69e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444   1 MSRRNISKKRFPEADSTYNSYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRI 80
Cdd:COG0049   1 MPRRGRAPKREVLPDPKYNSVLVTKFINKIMLDGKKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLVEVKSRRV 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 11467444  81 GGSTYQVPVEVSGFRATNLSLRWIIQYSRQRVGRTMSIKLANEIIDTANDIGNTIKKKEETHKM 144
Cdd:COG0049  81 GGATYQVPVEVRPERRQALAMRWIIDAARKRKEKTMAERLANELLDASNNRGAAVKKREDTHKM 144
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 18-144 1.30e-66

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 198.76  E-value: 1.30e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444    18 YNSYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRIGGSTYQVPVEVSGFRAT 97
Cdd:pfam00177   1 YNSPLVEKLINRLMRDGKKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERRV 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 11467444    98 NLSLRWIIQYSRQRVGRTMSIKLANEIIDTANDIGNTIKKKEETHKM 144
Cdd:pfam00177  81 ALALRWIIEAARKRSEKSMAERLANELIDAANGRGAAVKKKEETHRM 127
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 3-144 3.11e-56

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 173.25  E-value: 3.11e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444     3 RRNISKKRFPEADSTYNSYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRIGG 82
Cdd:TIGR01029   1 RKRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKTGEDPLEVFEQALENVKPLVEVKSRRVGG 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 11467444    83 STYQVPVEVSGFRATNLSLRWIIQYSRQRVGRTMSIKLANEIIDTANDIGNTIKKKEETHKM 144
Cdd:TIGR01029  81 ATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERLANEILDAANNTGAAIKKREDTHRM 142
 
Name Accession Description Interval E-value
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 9-154 4.95e-80

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 233.32  E-value: 4.95e-80
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444   9 KRFPEADSTYNSYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRIGGSTYQVP 88
Cdd:cd14871   1 KRPIKPDPIYNSRLVNMLVNRILKSGKKSLAYRIVYEALKEIKQKTKQDPLEVLEQAIRNVTPLVEVKARRVGGSTYQVP 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 11467444  89 VEVSGFRATNLSLRWIIQYSRQRVGRTMSIKLANEIIDTANDIGNTIKKKEETHKMQMPIKHLHIF 154
Cdd:cd14871  81 VEVRSERGTALAIRWLLKASRKRSGRSMASKLANEIIDAAKNTGNAIRKKEETHRMAEANKAFAHF 146
rps7 CHL00053
ribosomal protein S7
 1-154 1.70e-79

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 232.08  E-value: 1.70e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444    1 MSRRNISKKRFPEADSTYNSYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRI 80
Cdd:CHL00053   1 MSRRGTAKKRTAKPDPIYRNRLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKTEKNPLSVLRQAIRNVTPDVEVKARRV 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 11467444   81 GGSTYQVPVEVSGFRATNLSLRWIIQYSRQRVGRTMSIKLANEIIDTANDIGNTIKKKEETHKMQMPIKHLHIF 154
Cdd:CHL00053  81 GGSTYQVPIEIGSTRGKALAIRWLLKASRKRSGRNMAFKLSSELVDAAKGSGNAIRKKEETHRMAEANRAFAHF 154
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 1-144 4.69e-73

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 215.69  E-value: 4.69e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444   1 MSRRNISKKRFPEADSTYNSYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRI 80
Cdd:COG0049   1 MPRRGRAPKREVLPDPKYNSVLVTKFINKIMLDGKKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLVEVKSRRV 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 11467444  81 GGSTYQVPVEVSGFRATNLSLRWIIQYSRQRVGRTMSIKLANEIIDTANDIGNTIKKKEETHKM 144
Cdd:COG0049  81 GGATYQVPVEVRPERRQALAMRWIIDAARKRKEKTMAERLANELLDASNNRGAAVKKREDTHKM 144
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 1-144 1.01e-70

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 209.96  E-value: 1.01e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444    1 MSRRNISKKRFPEADSTYNSYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRI 80
Cdd:PRK05302   1 MPRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEKTGKDPLEVFEKALENVKPVVEVKSRRV 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 11467444   81 GGSTYQVPVEVSGFRATNLSLRWIIQYSRQRVGRTMSIKLANEIIDTANDIGNTIKKKEETHKM 144
Cdd:PRK05302  81 GGATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERLANELLDAANNRGAAVKKREDTHRM 144
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 18-144 1.30e-66

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 198.76  E-value: 1.30e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444    18 YNSYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRIGGSTYQVPVEVSGFRAT 97
Cdd:pfam00177   1 YNSPLVEKLINRLMRDGKKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERRV 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 11467444    98 NLSLRWIIQYSRQRVGRTMSIKLANEIIDTANDIGNTIKKKEETHKM 144
Cdd:pfam00177  81 ALALRWIIEAARKRSEKSMAERLANELIDAANGRGAAVKKKEETHRM 127
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 13-144 4.89e-66

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 197.29  E-value: 4.89e-66
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444  13 EADSTYNSYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRIGGSTYQVPVEVS 92
Cdd:cd14869   2 LPDPKYNSVLVSKFINKLMKDGKKSVAEKIVYDALEIIKKKTGKDPLEVFEKALENVKPLVEVRSRRVGGATYQVPVEVR 81

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 11467444  93 GFRATNLSLRWIIQYSRQRVGRTMSIKLANEIIDTANDIGNTIKKKEETHKM 144
Cdd:cd14869  82 PERRQSLALRWIIEAARKRKEKSMAEKLAAELLDAANNTGAAVKKKEDTHKM 133
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 3-144 3.11e-56

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 173.25  E-value: 3.11e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444     3 RRNISKKRFPEADSTYNSYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRIGG 82
Cdd:TIGR01029   1 RKRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKTGEDPLEVFEQALENVKPLVEVKSRRVGG 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 11467444    83 STYQVPVEVSGFRATNLSLRWIIQYSRQRVGRTMSIKLANEIIDTANDIGNTIKKKEETHKM 144
Cdd:TIGR01029  81 ATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERLANEILDAANNTGAAIKKREDTHRM 142
uS7_Mitochondria_Mammalian cd14870
Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein ...
 13-144 1.18e-34

Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. MRPS7 shows more homology to bacterial RPS7 than mitochondrial proteins from plants and fungi. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The ribosomes present in mammalian mitochondria have more proteins and low percentage of ribosomal RNA than bacterial ribosomes. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271249  Cd Length: 199  Bit Score: 119.65  E-value: 1.18e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444  13 EADSTYNSYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVK--------TNE-------DPLVVFERAIRNASPVVEVKA 77
Cdd:cd14870  41 ETSSVFYDPLVSKFINMMMKKGNKELAREIVEKTLENIKRIqlekyhkaTDEekesielNPLVIFHKAVENCKPLLGLTS 120

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 11467444  78 RRIGGSTYQVPVEVSGFRATNLSLRWIIQYSRQR-VGRTMSIKLANEIIDTANDIGNTIKKKEETHKM 144
Cdd:cd14870 121 VKRGGKTYQVPVPITPNRARFLAMKWLIEACREKkRKIRFPEKLARELLDASNNQGKVVKKKQELHKQ 188
uS7 cd00323
Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the ...
 20-144 4.76e-34

Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271245  Cd Length: 130  Bit Score: 116.20  E-value: 4.76e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444  20 SYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRIGGSTYQVPVEVSGFRATNL 99
Cdd:cd00323   1 KLLLKKFINILMKDGKKSKAEKIFSKALKILKKKTKKNPLKLLVEAIENIKPLVEVRSIKKRGKVYQVPVPLSPNRQVSL 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 11467444 100 SLRWIIQYSRQRVGRTMSIKLANEIIDTANDIGNTIKKKEETHKM 144
Cdd:cd00323  81 AIKWLLKAVRKRKETSFAERLANEILDASNNKGASIKKKDDLHKL 125
uS7_Mitochondria_Fungi cd14868
Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP) ...
 22-146 1.54e-25

Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Fungal and plants mitochondrial RPS7 shows less homology to the mammalian than to bacterial RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271247  Cd Length: 151  Bit Score: 94.95  E-value: 1.54e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444  22 LVSLLITRILKSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRIGGSTYQVPVEVSGFRATNLSL 101
Cdd:cd14868  24 LLEQLTNLIMKHGKKAKAQRIVSRALLHIHTLTRADPLPLLRQAIDSAAPLVKIKSQKKGAKNVQVPVPLNERQRRRKAI 103

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 11467444 102 RWIIQYSRQRVGRTMSIKLANEIIDTANDIGNTIKKKEETHKMQM 146
Cdd:cd14868 104 KWILEASDKRPGKSFSERLAEEIIAVVEGTSSALEKKEQVHKLAV 148
uS7_plant cd15484
plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part ...
 20-143 1.91e-25

plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271251  Cd Length: 147  Bit Score: 94.76  E-value: 1.91e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444  20 SYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVKT---NEDPLVVFERAIRNASPVVEVKARRIGGSTYQVPVEVSGFRA 96
Cdd:cd15484   1 KLLIKKFVNFLMKKGKKTKARTILFKTFHLLKQKQsaqTEDVLVILVTAVENVKPSFEVRKVRIAGTTQLIPAALSPNKQ 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 11467444  97 TNLSLRWIIQYSRQR------VGRTMSIKLANEIIDTANDIGNTIKKKEETHK 143
Cdd:cd15484  81 ETLAIRWILEAAKKKqrkqskKRYSFAYCLADEILDASKKQGKARQKRDELHK 133
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 7-140 1.81e-22

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 87.99  E-value: 1.81e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444   7 SKKRFPEADSTynsyLVSLLITRIL----KSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRIGG 82
Cdd:cd14867  38 QKKRFRKAQCP----IVERLINSLMmhgrNTGKKLMAYRIVKHAFEIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGG 113

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 11467444  83 STYQVPVEVSGFRATNLSLRWIIQYSRQ---RVGRTMSIKLANEIIDTANDIGNT--IKKKEE 140
Cdd:cd14867 114 TVRRQAVDVSPLRRVNQALRLIATGAREaafRNIKSIAECLADELINAAKGSSNSyaIKKKDE 176
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 7-140 2.27e-20

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 82.64  E-value: 2.27e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444    7 SKKRFPEADSTynsyLVSLLITRILK----SGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRIGG 82
Cdd:PRK04027  48 AKKQFGKAEVP----IVERLINKLMRternTGKKQKAYNIVKEAFEIIEKRTKQNPIQVLVDAIENAAPREETTRIKYGG 123

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 11467444   83 STYQVPVEVSGFRATNLSLRWIIQYSRQRVGRT-MSIK--LANEIIDTANDIGNT--IKKKEE 140
Cdd:PRK04027 124 ISYPKAVDVSPQRRVDLALRFIAEGARQASFKNkKSIEeaLAEEIIAAANNDPKSyaVRKKEE 186
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 7-144 1.12e-17

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 75.57  E-value: 1.12e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444     7 SKKRFPEADSTYNSYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRIGGSTYQ 86
Cdd:TIGR01028  39 AKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKEAFEIIEKRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYR 118

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 11467444    87 VPVEVSGFRATNLSLRWIIQYSRQRVGRT-MSIK--LANEIIDTANDIGNT--IKKKEETHKM 144
Cdd:TIGR01028 119 QAVDISPLRRVDQALRNIALGAREAAFRNkKSIAecLAEEIILAANGDSKSyaIKKKEELERV 181
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 6-143 8.67e-15

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 68.26  E-value: 8.67e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467444    6 ISKKRFPEADSTYNSYLVSLLITRILKSGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPvvEVKARRIG--GS 83
Cdd:PTZ00091  45 YQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIVKHAFEIIHLLTDKNPLQVLVDAVQNGGP--REDSTRVGsgGV 122

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 11467444   84 TYQVPVEVSGFRATNLSLRWIIQYSRQ---RVGRTMSIKLANEIIDTANDIGN--TIKKKEETHK 143
Cdd:PTZ00091 123 VRRQAVDVSPLRRVNQAIYLICKGAREaafRNIKTIAECLADEIINASKESSNsyAIKKKDEVER 187
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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