NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|6981316|ref|NP_037128|]
View 

oxytocin-neurophysin 1 preproprotein [Rattus norvegicus]

Protein Classification

NH domain-containing protein( domain architecture ID 10634981)

NH domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
NH smart00003
Neurohypophysial hormones; Vasopressin/oxytocin gene family.
 39-116 2.63e-31

Neurohypophysial hormones; Vasopressin/oxytocin gene family.


:

Pssm-ID: 128323  Cd Length: 78  Bit Score: 106.35  E-value: 2.63e-31
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6981316      39 RKCLPCGPGGKGRCFGPSICCADELGCFVGTAEALRCQEENYLPSPCQSGQKPCGSGGRCATAGICCSPDGCRTDPAC 116
Cdd:smart00003   1 RQCLPCGPGGRGRCFGPSICCGEELGCYVGTPETARCQEENYLPSPCQSGGKPCGSGGRCAAPGVCCSSESCAADPSC 78
 
Name Accession Description Interval E-value
NH smart00003
Neurohypophysial hormones; Vasopressin/oxytocin gene family.
 39-116 2.63e-31

Neurohypophysial hormones; Vasopressin/oxytocin gene family.


Pssm-ID: 128323  Cd Length: 78  Bit Score: 106.35  E-value: 2.63e-31
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6981316      39 RKCLPCGPGGKGRCFGPSICCADELGCFVGTAEALRCQEENYLPSPCQSGQKPCGSGGRCATAGICCSPDGCRTDPAC 116
Cdd:smart00003   1 RQCLPCGPGGRGRCFGPSICCGEELGCYVGTPETARCQEENYLPSPCQSGGKPCGSGGRCAAPGVCCSSESCAADPSC 78
Hormone_5 pfam00184
Neurohypophysial hormones, C-terminal Domain; N-terminal Domain is in hormone5
 39-116 9.29e-31

Neurohypophysial hormones, C-terminal Domain; N-terminal Domain is in hormone5


Pssm-ID: 459704  Cd Length: 79  Bit Score: 104.71  E-value: 9.29e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6981316     39 RKCLPCGPGGKGRCFGPSICCADELGCFVGTAEALRCQEENYLPSPCQSGQKPCGS-GGRCATAGICCSPDGCRTDPAC 116
Cdd:pfam00184   1 RQCMSCGPGGKGRCFGPSICCGEELGCLVGTAETLRCQEENYLPSPCQAGGKPCGSnGGRCAAPGICCTSESCSLDPSC 79
 
Name Accession Description Interval E-value
NH smart00003
Neurohypophysial hormones; Vasopressin/oxytocin gene family.
 39-116 2.63e-31

Neurohypophysial hormones; Vasopressin/oxytocin gene family.


Pssm-ID: 128323  Cd Length: 78  Bit Score: 106.35  E-value: 2.63e-31
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6981316      39 RKCLPCGPGGKGRCFGPSICCADELGCFVGTAEALRCQEENYLPSPCQSGQKPCGSGGRCATAGICCSPDGCRTDPAC 116
Cdd:smart00003   1 RQCLPCGPGGRGRCFGPSICCGEELGCYVGTPETARCQEENYLPSPCQSGGKPCGSGGRCAAPGVCCSSESCAADPSC 78
Hormone_5 pfam00184
Neurohypophysial hormones, C-terminal Domain; N-terminal Domain is in hormone5
 39-116 9.29e-31

Neurohypophysial hormones, C-terminal Domain; N-terminal Domain is in hormone5


Pssm-ID: 459704  Cd Length: 79  Bit Score: 104.71  E-value: 9.29e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6981316     39 RKCLPCGPGGKGRCFGPSICCADELGCFVGTAEALRCQEENYLPSPCQSGQKPCGS-GGRCATAGICCSPDGCRTDPAC 116
Cdd:pfam00184   1 RQCMSCGPGGKGRCFGPSICCGEELGCLVGTAETLRCQEENYLPSPCQAGGKPCGSnGGRCAAPGICCTSESCSLDPSC 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH