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Conserved domains on  [gi|6981158|ref|NP_036990|]
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lutropin subunit beta isoform 1 precursor [Rattus norvegicus]

Protein Classification

GHB_like domain-containing protein( domain architecture ID 11251631)

GHB_like domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GHB smart00068
Glycoprotein hormone beta chain homologues; Also called gonadotropins. Glycoprotein hormones ...
 25-131 5.66e-49

Glycoprotein hormone beta chain homologues; Also called gonadotropins. Glycoprotein hormones consist of two glycosylated chains (alpha and beta) of similar topology.


:

Pssm-ID: 214502  Cd Length: 107  Bit Score: 152.44  E-value: 5.66e-49
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981158      25 LRPLCRPVNATLAAENEFCPVCITFTTSICAGYCPSMVRVLPAALPPVPQPVCTYRELRFASVRLPGCPPGVDPIVSFPV 104
Cdd:smart00068   1 LRPGCRPTNATIAVEKEECPVCITINTTICAGYCYTRDPVYKSPLPPLPQRVCTYRELRYETVRLPGCPPGVDPVVTYPV 80

                           90       100
                   ....*....|....*....|....*..
gi 6981158     105 ALSCRCGPCRLSSSDCGGPRTQPMTCD 131
Cdd:smart00068  81 ALSCHCGKCNTDTTDCTVESLGPDSCS 107
 
Name Accession Description Interval E-value
GHB smart00068
Glycoprotein hormone beta chain homologues; Also called gonadotropins. Glycoprotein hormones ...
 25-131 5.66e-49

Glycoprotein hormone beta chain homologues; Also called gonadotropins. Glycoprotein hormones consist of two glycosylated chains (alpha and beta) of similar topology.


Pssm-ID: 214502  Cd Length: 107  Bit Score: 152.44  E-value: 5.66e-49
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981158      25 LRPLCRPVNATLAAENEFCPVCITFTTSICAGYCPSMVRVLPAALPPVPQPVCTYRELRFASVRLPGCPPGVDPIVSFPV 104
Cdd:smart00068   1 LRPGCRPTNATIAVEKEECPVCITINTTICAGYCYTRDPVYKSPLPPLPQRVCTYRELRYETVRLPGCPPGVDPVVTYPV 80

                           90       100
                   ....*....|....*....|....*..
gi 6981158     105 ALSCRCGPCRLSSSDCGGPRTQPMTCD 131
Cdd:smart00068  81 ALSCHCGKCNTDTTDCTVESLGPDSCS 107
Cys_knot pfam00007
Cystine-knot domain; The family comprises glycoprotein hormones and the C-terminal domain of ...
 26-130 5.04e-39

Cystine-knot domain; The family comprises glycoprotein hormones and the C-terminal domain of various extracellular proteins. It is believed to be involved in disulfide-linked dimerization.


Pssm-ID: 394966  Cd Length: 105  Bit Score: 127.14  E-value: 5.04e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981158     26 RPLCRPVNATLAAENEFCPVCITFTTSICAGYCPSMVRVLPAALPPVPQPVCTYRELRFASVRLPGCPPGVDPIVSFPVA 105
Cdd:pfam00007   1 RKKCIPTNYTISVEKEGCTSCKTINTTICAGYCYTRDPVYKDGRRAVSQRVCTYRDVTYETVVLPGCPPGVDPTVTYPVA 80

                          90       100
                  ....*....|....*....|....*
gi 6981158    106 LSCRCGPCRLSSSDCGGPRTQPMTC 130
Cdd:pfam00007  81 LSCHCGNCPTDNSDCTRLSLQPDSC 105
GHB_like cd00069
Glycoprotein hormone beta chain homologues; This family of cystine-knot hormones includes the ...
 29-123 2.40e-37

Glycoprotein hormone beta chain homologues; This family of cystine-knot hormones includes the beta chains of gonadotropins, thyrotropins, follitropins, choriogonadotropins and more. The members are reproductive hormones that consist of two glycosylated chains (alpha and beta), which form a tightly bound dimer.


Pssm-ID: 200450  Cd Length: 96  Bit Score: 122.78  E-value: 2.40e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981158   29 CRPVNATLAAENEFCPVCITFTTSICAGYCPSMVRVLPAAL-PPVPQPVCTYRELRFASVRLPGCPPGVDPIVSFPVALS 107
Cdd:cd00069   1 CHPRNYTIAVEKEGCGVCLAINTTICAGRCDTRDPVYKSPPyKPSHQPVCTYDEWRYETVRLPGCPPGVDPTYTYPVALS 80

                        90
                ....*....|....*.
gi 6981158  108 CRCGPCRLSSSDCGGP 123
Cdd:cd00069  81 CRCGLCNTDTTDCTRL 96
 
Name Accession Description Interval E-value
GHB smart00068
Glycoprotein hormone beta chain homologues; Also called gonadotropins. Glycoprotein hormones ...
 25-131 5.66e-49

Glycoprotein hormone beta chain homologues; Also called gonadotropins. Glycoprotein hormones consist of two glycosylated chains (alpha and beta) of similar topology.


Pssm-ID: 214502  Cd Length: 107  Bit Score: 152.44  E-value: 5.66e-49
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981158      25 LRPLCRPVNATLAAENEFCPVCITFTTSICAGYCPSMVRVLPAALPPVPQPVCTYRELRFASVRLPGCPPGVDPIVSFPV 104
Cdd:smart00068   1 LRPGCRPTNATIAVEKEECPVCITINTTICAGYCYTRDPVYKSPLPPLPQRVCTYRELRYETVRLPGCPPGVDPVVTYPV 80

                           90       100
                   ....*....|....*....|....*..
gi 6981158     105 ALSCRCGPCRLSSSDCGGPRTQPMTCD 131
Cdd:smart00068  81 ALSCHCGKCNTDTTDCTVESLGPDSCS 107
Cys_knot pfam00007
Cystine-knot domain; The family comprises glycoprotein hormones and the C-terminal domain of ...
 26-130 5.04e-39

Cystine-knot domain; The family comprises glycoprotein hormones and the C-terminal domain of various extracellular proteins. It is believed to be involved in disulfide-linked dimerization.


Pssm-ID: 394966  Cd Length: 105  Bit Score: 127.14  E-value: 5.04e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981158     26 RPLCRPVNATLAAENEFCPVCITFTTSICAGYCPSMVRVLPAALPPVPQPVCTYRELRFASVRLPGCPPGVDPIVSFPVA 105
Cdd:pfam00007   1 RKKCIPTNYTISVEKEGCTSCKTINTTICAGYCYTRDPVYKDGRRAVSQRVCTYRDVTYETVVLPGCPPGVDPTVTYPVA 80

                          90       100
                  ....*....|....*....|....*
gi 6981158    106 LSCRCGPCRLSSSDCGGPRTQPMTC 130
Cdd:pfam00007  81 LSCHCGNCPTDNSDCTRLSLQPDSC 105
GHB_like cd00069
Glycoprotein hormone beta chain homologues; This family of cystine-knot hormones includes the ...
 29-123 2.40e-37

Glycoprotein hormone beta chain homologues; This family of cystine-knot hormones includes the beta chains of gonadotropins, thyrotropins, follitropins, choriogonadotropins and more. The members are reproductive hormones that consist of two glycosylated chains (alpha and beta), which form a tightly bound dimer.


Pssm-ID: 200450  Cd Length: 96  Bit Score: 122.78  E-value: 2.40e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981158   29 CRPVNATLAAENEFCPVCITFTTSICAGYCPSMVRVLPAAL-PPVPQPVCTYRELRFASVRLPGCPPGVDPIVSFPVALS 107
Cdd:cd00069   1 CHPRNYTIAVEKEGCGVCLAINTTICAGRCDTRDPVYKSPPyKPSHQPVCTYDEWRYETVRLPGCPPGVDPTYTYPVALS 80

                        90
                ....*....|....*.
gi 6981158  108 CRCGPCRLSSSDCGGP 123
Cdd:cd00069  81 CRCGLCNTDTTDCTRL 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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