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Conserved domains on  [gi|171916083|ref|NP_034200|]
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docking protein 1 isoform 1 [Mus musculus]

Protein Classification

docking protein 1/2/3( domain architecture ID 10351132)

docking protein 1/2/3, also known as downstream of tyrosine kinase (DOK) 1/2/3, act as negative regulators of the Ras-Erk pathway downstream of many immunoreceptor-mediated signaling systems (DOK1/2) and of the activation of JNK and mobilization of Ca2+ in B-cell receptor-mediated signaling, interacting with SHIP-1 and Grb2 (DOK3)

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List of domain hits

Name Accession Description Interval E-value
PTB_DOK1_DOK2_DOK3 cd01203
Downstream of tyrosine kinase 1, 2, and 3 proteins phosphotyrosine-binding domain (PTBi); The ...
151-253 1.66e-57

Downstream of tyrosine kinase 1, 2, and 3 proteins phosphotyrosine-binding domain (PTBi); The Dok family adapters are phosphorylated by different protein tyrosine kinases. Dok proteins are involved in processes such as modulation of cell differentiation and proliferation, as well as in control of the cell spreading and migration The Dok protein contains an N-terminal pleckstrin homology (PH) domain followed by a central phosphotyrosine binding (PTB) domain, which has a PH-like fold, and a proline- and tyrosine-rich C-terminal tail. The PH domain is binds to acidic phospholids and localizes proteins to the plasma membrane, while the PTB domain mediates protein-protein interactions by binding to phosphotyrosine-containing motifs. The C-terminal part of Dok contains multiple tyrosine phosphorylation sites that serve as potential docking sites for Src homology 2-containing proteins such as ras GTPase-activating protein and Nck, leading to inhibition of ras signaling pathway activation and the c-Jun N-terminal kinase (JNK) and c-Jun activation, respectively. There are 7 mammalian Dok members: Dok-1 to Dok-7. Dok-1 and Dok-2 act as negative regulators of the Ras-Erk pathway downstream of many immunoreceptor-mediated signaling systems, and it is believed that recruitment of p120 rasGAP by Dok-1 and Dok-2 is critical to their negative regulation. Dok-3 is a negative regulator of the activation of JNK and mobilization of Ca2+ in B-cell receptor-mediated signaling, interacting with SHIP-1 and Grb2. Dok-4- 6 play roles in protein tyrosine kinase(PTK)-mediated signaling in neural cells and Dok-7 is the key cytoplasmic activator of MuSK (Muscle-Specific Protein Tyrosine Kinase). PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the IRS-like subgroup.


:

Pssm-ID: 269914  Cd Length: 99  Bit Score: 185.50  E-value: 1.66e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171916083 151 EGSQFWVTSQKTEASERCGLQGSYILRVEAEKLTLLTLGAQsqilEPLLFWPYTLLRRYGRDKVMFSFEAGRRCPSGPGT 230
Cdd:cd01203    1 EVKEFPVVVQRTEASERCRLKGSYLLRAGQDALELLDPQTK----KPLYSWPYRFLRRFGRDKVMFSFEAGRRCDSGEGL 76
                         90       100
                 ....*....|....*....|...
gi 171916083 231 FTFQTSQGNDIFQAVEAAIQQQK 253
Cdd:cd01203   77 FTFETPQGNEIFQAVEAAIAAQK 99
PH-like super family cl17171
Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like ...
6-119 3.24e-47

Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.


The actual alignment was detected with superfamily member cd14676:

Pssm-ID: 473070  Cd Length: 113  Bit Score: 159.11  E-value: 3.24e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171916083   6 MEGPLFLQSQRFGTKRWRKTWAVLYPASPHGVARLEFFDHKGSSSRGGRGGSRrLDCKMIRLAECVSVVPVTVESPPEPG 85
Cdd:cd14676    1 KEGQLYLQQQKFFGKKWRKFWAVLYPASPCGVARLEFFEGKGGPSGGKPSKRE-SDRKVIRLSDCVSVAPAGGESSPPRD 79
                         90       100       110
                 ....*....|....*....|....*....|....
gi 171916083  86 AVAFRLDTAQRSHLLAADAVSSTAWVQTLCRTAF 119
Cdd:cd14676   80 TAAFLLETTEKLYLLAAEAAERADWVQKLCELAF 113
 
Name Accession Description Interval E-value
PTB_DOK1_DOK2_DOK3 cd01203
Downstream of tyrosine kinase 1, 2, and 3 proteins phosphotyrosine-binding domain (PTBi); The ...
151-253 1.66e-57

Downstream of tyrosine kinase 1, 2, and 3 proteins phosphotyrosine-binding domain (PTBi); The Dok family adapters are phosphorylated by different protein tyrosine kinases. Dok proteins are involved in processes such as modulation of cell differentiation and proliferation, as well as in control of the cell spreading and migration The Dok protein contains an N-terminal pleckstrin homology (PH) domain followed by a central phosphotyrosine binding (PTB) domain, which has a PH-like fold, and a proline- and tyrosine-rich C-terminal tail. The PH domain is binds to acidic phospholids and localizes proteins to the plasma membrane, while the PTB domain mediates protein-protein interactions by binding to phosphotyrosine-containing motifs. The C-terminal part of Dok contains multiple tyrosine phosphorylation sites that serve as potential docking sites for Src homology 2-containing proteins such as ras GTPase-activating protein and Nck, leading to inhibition of ras signaling pathway activation and the c-Jun N-terminal kinase (JNK) and c-Jun activation, respectively. There are 7 mammalian Dok members: Dok-1 to Dok-7. Dok-1 and Dok-2 act as negative regulators of the Ras-Erk pathway downstream of many immunoreceptor-mediated signaling systems, and it is believed that recruitment of p120 rasGAP by Dok-1 and Dok-2 is critical to their negative regulation. Dok-3 is a negative regulator of the activation of JNK and mobilization of Ca2+ in B-cell receptor-mediated signaling, interacting with SHIP-1 and Grb2. Dok-4- 6 play roles in protein tyrosine kinase(PTK)-mediated signaling in neural cells and Dok-7 is the key cytoplasmic activator of MuSK (Muscle-Specific Protein Tyrosine Kinase). PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the IRS-like subgroup.


Pssm-ID: 269914  Cd Length: 99  Bit Score: 185.50  E-value: 1.66e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171916083 151 EGSQFWVTSQKTEASERCGLQGSYILRVEAEKLTLLTLGAQsqilEPLLFWPYTLLRRYGRDKVMFSFEAGRRCPSGPGT 230
Cdd:cd01203    1 EVKEFPVVVQRTEASERCRLKGSYLLRAGQDALELLDPQTK----KPLYSWPYRFLRRFGRDKVMFSFEAGRRCDSGEGL 76
                         90       100
                 ....*....|....*....|...
gi 171916083 231 FTFQTSQGNDIFQAVEAAIQQQK 253
Cdd:cd01203   77 FTFETPQGNEIFQAVEAAIAAQK 99
PH_DOK1,2,3 cd14676
Pleckstrin homology (PH) domain of Downstream of tyrosine kinase 1, 2, and 3; The Dok family ...
6-119 3.24e-47

Pleckstrin homology (PH) domain of Downstream of tyrosine kinase 1, 2, and 3; The Dok family adapters are phosphorylated by different protein tyrosine kinases. Dok proteins are involved in processes such as modulation of cell differentiation and proliferation, as well as in control of the cell spreading and migration The Dok protein contains an N-terminal pleckstrin homology (PH) domain followed by a central phosphotyrosine binding (PTB) domain, which has a PH-like fold, and a proline- and tyrosine-rich C-terminal tail. The PH domain is binds to acidic phospholids and localizes proteins to the plasma membrane. There are 7 mammalian Dok members: Dok-1 to Dok-7. Dok-1 and Dok-2 act as negative regulators of the Ras-Erk pathway downstream of many immunoreceptor-mediated signaling systems, and it is believed that recruitment of p120 rasGAP by Dok-1 and Dok-2 is critical to their negative regulation. Dok-3 is a negative regulator of the activation of JNK and mobilization of Ca2+ in B-cell receptor-mediated signaling, interacting with SHIP-1 and Grb2. In general, PH domains have diverse functions, but are generally involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270195  Cd Length: 113  Bit Score: 159.11  E-value: 3.24e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171916083   6 MEGPLFLQSQRFGTKRWRKTWAVLYPASPHGVARLEFFDHKGSSSRGGRGGSRrLDCKMIRLAECVSVVPVTVESPPEPG 85
Cdd:cd14676    1 KEGQLYLQQQKFFGKKWRKFWAVLYPASPCGVARLEFFEGKGGPSGGKPSKRE-SDRKVIRLSDCVSVAPAGGESSPPRD 79
                         90       100       110
                 ....*....|....*....|....*....|....
gi 171916083  86 AVAFRLDTAQRSHLLAADAVSSTAWVQTLCRTAF 119
Cdd:cd14676   80 TAAFLLETTEKLYLLAAEAAERADWVQKLCELAF 113
PTBI smart00310
Phosphotyrosine-binding domain (IRS1-like);
153-254 4.48e-46

Phosphotyrosine-binding domain (IRS1-like);


Pssm-ID: 197644  Cd Length: 99  Bit Score: 155.65  E-value: 4.48e-46
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171916083   153 SQFWVTSQKTEASERCGLQGSYILRVEAEKLTLLTlgaQSQILEPLLFWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFT 232
Cdd:smart00310   1 KQFWVTIRKTEGLERCPLSGSYRLRLTSEELVLWR---GLNPRVELVVWPLLSLRRYGRDKVFFFFEAGRRCVSGPGEFT 77
                           90       100
                   ....*....|....*....|..
gi 171916083   233 FQTSQGNDIFQAVEAAIQQQKA 254
Cdd:smart00310  78 FQTVVAQEIFQLVLEAMQAQKN 99
IRS pfam02174
PTB domain (IRS-1 type);
155-254 8.83e-41

PTB domain (IRS-1 type);


Pssm-ID: 460473  Cd Length: 99  Bit Score: 141.23  E-value: 8.83e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171916083  155 FWVTSQKTEASERCGLQGSYILRVEAEKLTLLTLGAQsqilEPLLFWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFTFQ 234
Cdd:pfam02174   4 FPVTVRRTGASERCGLSGSYRLCLTAEALTLDKLNTR----VPLVSWPLTSLRRYGRDKNFFSFEAGRRCVTGEGEFWFQ 79
                          90       100
                  ....*....|....*....|
gi 171916083  235 TSQGNDIFQAVEAAIQQQKA 254
Cdd:pfam02174  80 TDDAEEIFETVLAAMKAQKE 99
PH pfam00169
PH domain; PH stands for pleckstrin homology.
5-116 4.57e-06

PH domain; PH stands for pleckstrin homology.


Pssm-ID: 459697 [Multi-domain]  Cd Length: 105  Bit Score: 45.25  E-value: 4.57e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171916083    5 VMEGPLFLQSQRFGtKRWRKTWAVLYPASphgvarLEFFDHKGSSSRGGRggsrrldCKMIRLAECVSVVPVTVESPPEP 84
Cdd:pfam00169   2 VKEGWLLKKGGGKK-KSWKKRYFVLFDGS------LLYYKDDKSGKSKEP-------KGSISLSGCEVVEVVASDSPKRK 67
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 171916083   85 GAVAFRLDTAQ--RSHLL-AADAVSSTAWVQTLCR 116
Cdd:pfam00169  68 FCFELRTGERTgkRTYLLqAESEEERKDWIKAIQS 102
PH smart00233
Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The ...
5-118 9.17e-05

Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.


Pssm-ID: 214574 [Multi-domain]  Cd Length: 102  Bit Score: 41.38  E-value: 9.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171916083     5 VMEGPLFLQSQRFGtKRWRKTWAVLYPasphgvARLEFFDHKGSSSRGGRGgsrrldcKMIRLAECVSVVPVTVESPPEP 84
Cdd:smart00233   2 IKEGWLYKKSGGGK-KSWKKRYFVLFN------STLLYYKSKKDKKSYKPK-------GSIDLSGCTVREAPDPDSSKKP 67
                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 171916083    85 GavAFRLDTAQR-SHLLAADAVSS-TAWVQTLCRTA 118
Cdd:smart00233  68 H--CFEIKTSDRkTLLLQAESEEErEKWVEALRKAI 101
 
Name Accession Description Interval E-value
PTB_DOK1_DOK2_DOK3 cd01203
Downstream of tyrosine kinase 1, 2, and 3 proteins phosphotyrosine-binding domain (PTBi); The ...
151-253 1.66e-57

Downstream of tyrosine kinase 1, 2, and 3 proteins phosphotyrosine-binding domain (PTBi); The Dok family adapters are phosphorylated by different protein tyrosine kinases. Dok proteins are involved in processes such as modulation of cell differentiation and proliferation, as well as in control of the cell spreading and migration The Dok protein contains an N-terminal pleckstrin homology (PH) domain followed by a central phosphotyrosine binding (PTB) domain, which has a PH-like fold, and a proline- and tyrosine-rich C-terminal tail. The PH domain is binds to acidic phospholids and localizes proteins to the plasma membrane, while the PTB domain mediates protein-protein interactions by binding to phosphotyrosine-containing motifs. The C-terminal part of Dok contains multiple tyrosine phosphorylation sites that serve as potential docking sites for Src homology 2-containing proteins such as ras GTPase-activating protein and Nck, leading to inhibition of ras signaling pathway activation and the c-Jun N-terminal kinase (JNK) and c-Jun activation, respectively. There are 7 mammalian Dok members: Dok-1 to Dok-7. Dok-1 and Dok-2 act as negative regulators of the Ras-Erk pathway downstream of many immunoreceptor-mediated signaling systems, and it is believed that recruitment of p120 rasGAP by Dok-1 and Dok-2 is critical to their negative regulation. Dok-3 is a negative regulator of the activation of JNK and mobilization of Ca2+ in B-cell receptor-mediated signaling, interacting with SHIP-1 and Grb2. Dok-4- 6 play roles in protein tyrosine kinase(PTK)-mediated signaling in neural cells and Dok-7 is the key cytoplasmic activator of MuSK (Muscle-Specific Protein Tyrosine Kinase). PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the IRS-like subgroup.


Pssm-ID: 269914  Cd Length: 99  Bit Score: 185.50  E-value: 1.66e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171916083 151 EGSQFWVTSQKTEASERCGLQGSYILRVEAEKLTLLTLGAQsqilEPLLFWPYTLLRRYGRDKVMFSFEAGRRCPSGPGT 230
Cdd:cd01203    1 EVKEFPVVVQRTEASERCRLKGSYLLRAGQDALELLDPQTK----KPLYSWPYRFLRRFGRDKVMFSFEAGRRCDSGEGL 76
                         90       100
                 ....*....|....*....|...
gi 171916083 231 FTFQTSQGNDIFQAVEAAIQQQK 253
Cdd:cd01203   77 FTFETPQGNEIFQAVEAAIAAQK 99
PH_DOK1,2,3 cd14676
Pleckstrin homology (PH) domain of Downstream of tyrosine kinase 1, 2, and 3; The Dok family ...
6-119 3.24e-47

Pleckstrin homology (PH) domain of Downstream of tyrosine kinase 1, 2, and 3; The Dok family adapters are phosphorylated by different protein tyrosine kinases. Dok proteins are involved in processes such as modulation of cell differentiation and proliferation, as well as in control of the cell spreading and migration The Dok protein contains an N-terminal pleckstrin homology (PH) domain followed by a central phosphotyrosine binding (PTB) domain, which has a PH-like fold, and a proline- and tyrosine-rich C-terminal tail. The PH domain is binds to acidic phospholids and localizes proteins to the plasma membrane. There are 7 mammalian Dok members: Dok-1 to Dok-7. Dok-1 and Dok-2 act as negative regulators of the Ras-Erk pathway downstream of many immunoreceptor-mediated signaling systems, and it is believed that recruitment of p120 rasGAP by Dok-1 and Dok-2 is critical to their negative regulation. Dok-3 is a negative regulator of the activation of JNK and mobilization of Ca2+ in B-cell receptor-mediated signaling, interacting with SHIP-1 and Grb2. In general, PH domains have diverse functions, but are generally involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270195  Cd Length: 113  Bit Score: 159.11  E-value: 3.24e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171916083   6 MEGPLFLQSQRFGTKRWRKTWAVLYPASPHGVARLEFFDHKGSSSRGGRGGSRrLDCKMIRLAECVSVVPVTVESPPEPG 85
Cdd:cd14676    1 KEGQLYLQQQKFFGKKWRKFWAVLYPASPCGVARLEFFEGKGGPSGGKPSKRE-SDRKVIRLSDCVSVAPAGGESSPPRD 79
                         90       100       110
                 ....*....|....*....|....*....|....
gi 171916083  86 AVAFRLDTAQRSHLLAADAVSSTAWVQTLCRTAF 119
Cdd:cd14676   80 TAAFLLETTEKLYLLAAEAAERADWVQKLCELAF 113
PTBI smart00310
Phosphotyrosine-binding domain (IRS1-like);
153-254 4.48e-46

Phosphotyrosine-binding domain (IRS1-like);


Pssm-ID: 197644  Cd Length: 99  Bit Score: 155.65  E-value: 4.48e-46
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171916083   153 SQFWVTSQKTEASERCGLQGSYILRVEAEKLTLLTlgaQSQILEPLLFWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFT 232
Cdd:smart00310   1 KQFWVTIRKTEGLERCPLSGSYRLRLTSEELVLWR---GLNPRVELVVWPLLSLRRYGRDKVFFFFEAGRRCVSGPGEFT 77
                           90       100
                   ....*....|....*....|..
gi 171916083   233 FQTSQGNDIFQAVEAAIQQQKA 254
Cdd:smart00310  78 FQTVVAQEIFQLVLEAMQAQKN 99
IRS pfam02174
PTB domain (IRS-1 type);
155-254 8.83e-41

PTB domain (IRS-1 type);


Pssm-ID: 460473  Cd Length: 99  Bit Score: 141.23  E-value: 8.83e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171916083  155 FWVTSQKTEASERCGLQGSYILRVEAEKLTLLTLGAQsqilEPLLFWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFTFQ 234
Cdd:pfam02174   4 FPVTVRRTGASERCGLSGSYRLCLTAEALTLDKLNTR----VPLVSWPLTSLRRYGRDKNFFSFEAGRRCVTGEGEFWFQ 79
                          90       100
                  ....*....|....*....|
gi 171916083  235 TSQGNDIFQAVEAAIQQQKA 254
Cdd:pfam02174  80 TDDAEEIFETVLAAMKAQKE 99
PTB_FRS2 cd01202
Fibroblast growth factor receptor substrate 2 phosphotyrosine-binding domain; FRS2 (also ...
172-250 6.68e-21

Fibroblast growth factor receptor substrate 2 phosphotyrosine-binding domain; FRS2 (also called Suc1-associated neurotrophic factor (SNT)-induced tyrosine-phosphorylated target) proteins are membrane-anchored adaptor proteins. They are composed of an N-terminal myristoylation site followed by a phosphotyrosine binding (PTB) domain, which has a PH-like fold, and a C-terminal effector domain containing multiple tyrosine and serine/threonine phosphorylation site. The FRS2/SNT proteins show increased tyrosine phosphorylation by activated receptors, such as fibroblast growth factor receptor (FGFR) and TrkA, recruit SH2 domain containing proteins such as Grb2, and mediate signals from activated receptors to a variety of downstream pathways. The PTB domains of the SNT proteins directly interact with the canonical NPXpY motif of TrkA in a phosphorylationdependent manner, they directly bind to the juxtamembrane region of FGFR in a phosphorylation-independent manner. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the IRS-like subgroup.


Pssm-ID: 269913  Cd Length: 92  Bit Score: 86.87  E-value: 6.68e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 171916083 172 GSYILRVEAEKLTLLTLGAQSQIlepllfWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFTFQTSQGNDIFQAVEAAIQ 250
Cdd:cd01202   20 GSGILEVTETELILYQRGKEPVR------WPLLCLRRYGYDSNLFSFESGRRCATGEGIYAFKCKRAEELFNLVQRLIQ 92
PTB_DOK4_DOK5_DOK6 cd13164
Downstream of tyrosine kinase 4, 5, and 6 proteins phosphotyrosine-binding domain (PTBi); The ...
198-255 1.20e-15

Downstream of tyrosine kinase 4, 5, and 6 proteins phosphotyrosine-binding domain (PTBi); The Dok family adapters are phosphorylated by different protein tyrosine kinases. Dok proteins are involved in processes such as modulation of cell differentiation and proliferation, as well as in control of the cell spreading and migration The Dok protein contains an N-terminal pleckstrin homology (PH) domain followed by a central phosphotyrosine binding (PTB) domain, which has a PH-like fold, and a proline- and tyrosine-rich C-terminal tail. The PH domain binds to acidic phospholids and localizes proteins to the plasma membrane, while the PTB domain mediates protein-protein interactions by binding to phosphotyrosine-containing motifs. The C-terminal part of Dok contains multiple tyrosine phosphorylation sites that serve as potential docking sites for Src homology 2-containing proteins such as ras GTPase-activating protein and Nck, leading to inhibition of ras signaling pathway activation and the c-Jun N-terminal kinase (JNK) and c-Jun activation, respectively. There are 7 mammalian Dok members: Dok-1 to Dok-7. Dok-1 and Dok-2 act as negative regulators of the Ras-Erk pathway downstream of many immunoreceptor-mediated signaling systems, and it is believed that recruitment of p120 rasGAP by Dok-1 and Dok-2 is critical to their negative regulation. Dok-3 is a negative regulator of the activation of JNK and mobilization of Ca2+ in B-cell receptor-mediated signaling, interacting with SHIP-1 and Grb2. Dok-4- 6 play roles in protein tyrosine kinase(PTK)-mediated signaling in neural cells and Dok-7 is the key cytoplasmic activator of MuSK (Muscle-Specific Protein Tyrosine Kinase). PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the IRS-like subgroup.


Pssm-ID: 241318  Cd Length: 103  Bit Score: 72.46  E-value: 1.20e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 171916083 198 LLFWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFTFQTSQGNDIFQAVEAAIQQQKAQ 255
Cdd:cd13164   44 LVSWPLCSLRRYGRDSTWFTFEAGRMCDTGEGLFTFQTREGEQIYQRVHSATLAIAEQ 101
PTB cd00934
Phosphotyrosine-binding (PTB) PH-like fold; PTB domains have a common PH-like fold and are ...
159-248 4.55e-06

Phosphotyrosine-binding (PTB) PH-like fold; PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to bind peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains.


Pssm-ID: 269911  Cd Length: 120  Bit Score: 45.58  E-value: 4.55e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171916083 159 SQKTEASERCGLQGSYILRVEAEKLTLLTLGAQsqilEPLLFWPYTLLRRYGRDKV---MFSFEAGRRCPSGPGTFTFQT 235
Cdd:cd00934   28 ALAAALKSSKRKPGPVLLEVSSKGVKLLDLDTK----ELLLRHPLHRISYCGRDPDnpnVFAFIAGEEGGSGFRCHVFQC 103
                         90
                 ....*....|....*.
gi 171916083 236 S---QGNDIFQAVEAA 248
Cdd:cd00934  104 EdeeEAEEILQAIGQA 119
PH pfam00169
PH domain; PH stands for pleckstrin homology.
5-116 4.57e-06

PH domain; PH stands for pleckstrin homology.


Pssm-ID: 459697 [Multi-domain]  Cd Length: 105  Bit Score: 45.25  E-value: 4.57e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171916083    5 VMEGPLFLQSQRFGtKRWRKTWAVLYPASphgvarLEFFDHKGSSSRGGRggsrrldCKMIRLAECVSVVPVTVESPPEP 84
Cdd:pfam00169   2 VKEGWLLKKGGGKK-KSWKKRYFVLFDGS------LLYYKDDKSGKSKEP-------KGSISLSGCEVVEVVASDSPKRK 67
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 171916083   85 GAVAFRLDTAQ--RSHLL-AADAVSSTAWVQTLCR 116
Cdd:pfam00169  68 FCFELRTGERTgkRTYLLqAESEEERKDWIKAIQS 102
PH smart00233
Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The ...
5-118 9.17e-05

Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.


Pssm-ID: 214574 [Multi-domain]  Cd Length: 102  Bit Score: 41.38  E-value: 9.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171916083     5 VMEGPLFLQSQRFGtKRWRKTWAVLYPasphgvARLEFFDHKGSSSRGGRGgsrrldcKMIRLAECVSVVPVTVESPPEP 84
Cdd:smart00233   2 IKEGWLYKKSGGGK-KSWKKRYFVLFN------STLLYYKSKKDKKSYKPK-------GSIDLSGCTVREAPDPDSSKKP 67
                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 171916083    85 GavAFRLDTAQR-SHLLAADAVSS-TAWVQTLCRTA 118
Cdd:smart00233  68 H--CFEIKTSDRkTLLLQAESEEErEKWVEALRKAI 101
PTB_IRS cd01204
Insulin receptor substrate phosphotyrosine-binding domain (PTBi); Insulin receptor substrate ...
156-235 3.47e-04

Insulin receptor substrate phosphotyrosine-binding domain (PTBi); Insulin receptor substrate (IRS) molecules are mediators in insulin signaling and play a role in maintaining basic cellular functions such as growth and metabolism. They act as docking proteins between the insulin receptor and a complex network of intracellular signaling molecules containing Src homology 2 (SH2) domains. Four members (IRS-1, IRS-2, IRS-3, IRS-4) of this family have been identified that differ as to tissue distribution, subcellular localization, developmental expression, binding to the insulin receptor, and interaction with SH2 domain-containing proteins. IRS molecules have an N-terminal PH domain, followed by an IRS-like PTB domain which has a PH-like fold. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the IRS-like subgroup.


Pssm-ID: 269915  Cd Length: 106  Bit Score: 39.93  E-value: 3.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 171916083 156 W-VTSQKTEASERCGLQGSYILRVEAEKLTLLTLGAQSQiLEPLLFwPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFTFQ 234
Cdd:cd01204    5 WqVTVKKKGLGQSKNLTGIYRLCLTSKTLSLVKLNSEKN-PPSVEI-QLMNIRRCGHSENFFFIEVGRSAVTGPGELWMQ 82

                 .
gi 171916083 235 T 235
Cdd:cd01204   83 V 83
PTB_DOK7 cd13165
Downstream of tyrosine kinase 7 phosphotyrosine-binding domain (PTBi); The Dok family adapters ...
195-241 5.03e-03

Downstream of tyrosine kinase 7 phosphotyrosine-binding domain (PTBi); The Dok family adapters are phosphorylated by different protein tyrosine kinases. Dok proteins are involved in processes such as modulation of cell differentiation and proliferation, as well as in control of the cell spreading and migration The Dok protein contains an N-terminal pleckstrin homology (PH) domain followed by a central phosphotyrosine binding (PTB) domain, which has a PH-like fold, and a proline- and tyrosine-rich C-terminal tail. The PH domain is binds to acidic phospholids and localizes proteins to the plasma membrane, while the PTB domain mediates protein-protein interactions by binding to phosphotyrosine-containing motifs. The C-terminal part of Dok contains multiple tyrosine phosphorylation sites that serve as potential docking sites for Src homology 2-containing proteins such as ras GTPase-activating protein and Nck, leading to inhibition of ras signaling pathway activation and the c-Jun N-terminal kinase (JNK) and c-Jun activation, respectively. There are 7 mammalian Dok members: Dok-1 to Dok-7. Dok-1 and Dok-2 act as negative regulators of the Ras-Erk pathway downstream of many immunoreceptor-mediated signaling systems, and it is believed that recruitment of p120 rasGAP by Dok-1 and Dok-2 is critical to their negative regulation. Dok-3 is a negative regulator of the activation of JNK and mobilization of Ca2+ in B-cell receptor-mediated signaling, interacting with SHIP-1 and Grb2. Dok-4- 6 play roles in protein tyrosine kinase(PTK)-mediated signaling in neural cells and Dok-7 is the key cytoplasmic activator of MuSK (Muscle-Specific Protein Tyrosine Kinase). PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the IRS-like subgroup.


Pssm-ID: 269986  Cd Length: 101  Bit Score: 36.72  E-value: 5.03e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 171916083 195 LEPLLFWPYTL--LRRYGRDKVMFSFEAGRRCPSGPGTFTFQTSQGNDI 241
Cdd:cd13165   37 VPPAVLGQWKLsdLRRYGAVPGGFIFEGGTRCGKWAGVFFLSTEEGEQI 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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