|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
552-1050 |
1.61e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 98.09 E-value: 1.61e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 552 LKLELEEKKQAMALLQRALAQQR----DLTVRRVKETEKELTRQLRQQKEQYEATIQRHLSF-----------------I 610
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAEleelEAELEELEAELEELEAELAELEAELEELRLELEELeleleeaqaeeyellaeL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 611 DQLIEDKKVLSEKCEAVVAELKHGDQRCRERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPE 690
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 691 IQKLIAKHKQEVRRLRglHEAELQQREEQAAQRHLRQAEELRQHLDREREVLGQQERERAQQRFEQHLEQEQRALEQQRR 770
Cdd:COG1196 378 EEELEELAEELLEALR--AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 771 RLYNEVAEEKERLGQQAARQRAELEELRQQLEE--SSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVAS 848
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEaaARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAA 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 849 CAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAESRVKRVRDKYETELSELEQSE-RKLQERC 927
Cdd:COG1196 536 YEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDlREADARY 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 928 SELKGRLGEAEGEKERLQSLVRQKEKELEDLRAVNTQMcsERASLAQVVRQEFAEQLAASQEETQRVKVELAELQARQQV 1007
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEG--EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 294345409 1008 ELDEVHRRVKTALARKEAAVNSLRKQHEAAVKRADHLEELLEQ 1050
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
690-1026 |
2.29e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.60 E-value: 2.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 690 EIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELRQHLDREREVL--GQQERERAQQRFEQHLEQEQRALEQ 767
Cdd:COG1196 206 ERQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELeaELAELEAELEELRLELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 768 QRRRLYnEVAEEKERLGQQAARQRAELEELRQQLEESSAALTRALRAEFERSREEQerrhqmELKALKDQLEAERQAWVA 847
Cdd:COG1196 286 AQAEEY-ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE------ELEEELEEAEEELEEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 848 SCAKKEEAwLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAESRVKRVRDKYETELSELEQSERKLQERC 927
Cdd:COG1196 359 ELAEAEEA-LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 928 SELKGRLGEAEGEKERLQSLVRQKEKELEDLRAVNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKVELAELQARQQV 1007
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLA 517
|
330
....*....|....*....
gi 294345409 1008 ELDEVHRRVKTALARKEAA 1026
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAY 536
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
551-1040 |
3.05e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.75 E-value: 3.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 551 RLKLELEEKKQAMALLQRALA---QQRDLTVRRVKETEKELTRqLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAV 627
Cdd:COG1196 278 ELELELEEAQAEEYELLAELArleQDIARLEERRRELEERLEE-LEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 628 VAELKHGDQRCRERVAQMQEQHELEIKKLKELMSATEKIRREKW-INEKTKKIKEITVR--GLEPEIQKLIAKHKQEVRR 704
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAqLEELEEAEEALLERleRLEEELEELEEALAELEEE 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 705 LRGLHEAELQQREEQAAQRHLRQAEELRQHLDREREVLGQQERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERLG 784
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 785 QQAARQRAELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTREREL 864
Cdd:COG1196 517 AGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGA 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 865 KEEIRKGRDQEIELVIHRLEADMTLAKEES-----ERAAESRVKRVRDKYETELSELEQSERKLQERCSELKGRLGEAEG 939
Cdd:COG1196 597 IGAAVDLVASDLREADARYYVLGDTLLGRTlvaarLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLE 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 940 EKERLQSLVRQKEKELEDLRAVNTQMCSERASLAQvvRQEFAEQLAASQEETQRVKVELAELQARQQVELDEVHRRVKTA 1019
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEEEEERELAE--AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE 754
|
490 500
....*....|....*....|.
gi 294345409 1020 LARKEAAVNSLRKQHEAAVKR 1040
Cdd:COG1196 755 ELPEPPDLEELERELERLERE 775
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
312-968 |
5.96e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 80.19 E-value: 5.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 312 RQEEAARKKAREEKARQARQAaiqEQQKRAQKASEAEHRRpKDRPETRAPEQPRPMQEPgcvthPKANNAGASIYPTGPA 391
Cdd:PTZ00121 1200 RKAEAARKAEEERKAEEARKA---EDAKKAEAVKKAEEAK-KDAEEAKKAEEERNNEEI-----RKFEEARMAHFARRQA 1270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 392 DPCPPASESSPEQWQSPEDKPQDihsqgEARQDLAVSGSSRGKARA----RATLDDLLDTLKLLEEEPEPLPHPKAYHKD 467
Cdd:PTZ00121 1271 AIKAEEARKADELKKAEEKKKAD-----EAKKAEEKKKADEAKKKAeeakKADEAKKKAEEAKKKADAAKKKAEEAKKAA 1345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 468 RYAWTDEEEDANSLTADNLEKFG---KLSAAPGPPDDGTLLSEAKLQSimtflDEMEKSGQERpapwrESLVLEAGSGSE 544
Cdd:PTZ00121 1346 EAAKAEAEAAADEAEAAEEKAEAaekKKEEAKKKADAAKKKAEEKKKA-----DEAKKKAEED-----KKKADELKKAAA 1415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 545 GSTSVMRLKLELEEKKQAMALLQRALAQQRDLTVRRVKETEKELTRQLRQQKEQYEATiqrhlsfidqliEDKKVLSEKC 624
Cdd:PTZ00121 1416 AKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD------------EAKKKAEEAK 1483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 625 EAvvAELKHGDQRCRERVAQMQEQHElEIKKLKELMSATEKIRREKWINEKTKKiKEITVRGLEPEIQKLIAKHKQEVRR 704
Cdd:PTZ00121 1484 KA--DEAKKKAEEAKKKADEAKKAAE-AKKKADEAKKAEEAKKADEAKKAEEAK-KADEAKKAEEKKKADELKKAEELKK 1559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 705 LRGLHEAELQQREEQAAQRHLRQAEELRQHLDREREVLGQQERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERLG 784
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 785 QQAARQRAELEELRQQLEESSAaltralraefersreeqeRRHQMELKALKDQLEAERqawvascAKKEEawlltrerel 864
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKI------------------KAAEEAKKAEEDKKKAEE-------AKKAE---------- 1684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 865 kEEIRKGRDQEIELVIHRLEADMTLAKEESERAAESRVKRVRDKYETELSELEQSERKLQERCSELKgrlgEAEGEKERL 944
Cdd:PTZ00121 1685 -EDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK----KDEEEKKKI 1759
|
650 660
....*....|....*....|....
gi 294345409 945 QSLVRQKEKELEDLRAVNTQMCSE 968
Cdd:PTZ00121 1760 AHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
695-1052 |
1.17e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.74 E-value: 1.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 695 IAKHKQevRRlrglHEAElqqREEQAAQRHLRQAEELRQHLDREREVLGQQeRERAQQRFEqhLEQEQRALEQQRRRL-Y 773
Cdd:COG1196 167 ISKYKE--RK----EEAE---RKLEATEENLERLEDILGELERQLEPLERQ-AEKAERYRE--LKEELKELEAELLLLkL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 774 NEVAEEKERLGQQAARQRAELEELRQQLEESSAALTRAlraefersreeqerrhQMELKALKDQLEAERQawvascakke 853
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEEL----------------RLELEELELELEEAQA---------- 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 854 eawlltRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAEsrvKRVRDKYETELSELEQSERKLQERCSELKGR 933
Cdd:COG1196 289 ------EEYELLAELARLEQDIARLEERRRELEERLEELEEELAEL---EEELEELEEELEELEEELEEAEEELEEAEAE 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 934 LGEAEGEKERLQSLVRQKEKELEDLRAVNTQMCSERASLAQVVRQEfAEQLAASQEETQRVKVELAELQARQQVELDEVH 1013
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL-EEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
330 340 350
....*....|....*....|....*....|....*....
gi 294345409 1014 RRVKTALARKEAAVNSLRKQHEAAVKRADHLEELLEQHK 1052
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
551-1001 |
3.16e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 3.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 551 RLKLELEEKKQAMALLQRALAQQRDlTVRRVKETEKELTRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKcEAVVAE 630
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEE-ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA-LRAAAE 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 631 LKHGDQRCRERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHE 710
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 711 A--ELQQREEQAAQRHLRQAEELRQHLDREREVLGQQERERAQ-------------QRFEQHLEQEQRALEQQRRRLYNE 775
Cdd:COG1196 478 AlaELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRglagavavligveAAYEAALEAALAAALQNIVVEDDE 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 776 VAEEKERLGQQAARQRAELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEA 855
Cdd:COG1196 558 VAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALR 637
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 856 WLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAESRVKRVRDKYETELSELEQSERKLQERCSELKGRLG 935
Cdd:COG1196 638 RAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 294345409 936 EAEGEKERLQSLVRQKEKELEDLRAVNTQMCSERASLAQVVRQEFAEQlaasQEETQRVKVELAEL 1001
Cdd:COG1196 718 EEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL----ERELERLEREIEAL 779
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
553-1052 |
1.02e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.78 E-value: 1.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 553 KLELEEKKQAMALLQRALAQQRDLTVRRVKETEKELTRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAvvAELK 632
Cdd:PTZ00121 1244 KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA--DEAK 1321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 633 HGDQRCRERVAQMQEQHElEIKKLKELMSATEKIRREKWinEKTKKIKEITVRGLEPEIQKLIAKhKQEVRRLRGLHEAE 712
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAE-EAKKAAEAAKAEAEAAADEA--EAAEEKAEAAEKKKEEAKKKADAA-KKKAEEKKKADEAK 1397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 713 LQQREEQAAQRHLRQAEELRQHLDrerEVLGQQERERAQQRFEQHLEQEQRALEQQRRRlynEVAEEKERLGQQAARQRa 792
Cdd:PTZ00121 1398 KKAEEDKKKADELKKAAAAKKKAD---EAKKKAEEKKKADEAKKKAEEAKKADEAKKKA---EEAKKAEEAKKKAEEAK- 1470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 793 ELEELRQQLEESSAAlTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGR 872
Cdd:PTZ00121 1471 KADEAKKKAEEAKKA-DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 873 DQEIELVIHRLEAdmtLAKEESERAAESRVKRVRDKYEtelsELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKE 952
Cdd:PTZ00121 1550 ELKKAEELKKAEE---KKKAEEAKKAEEDKNMALRKAE----EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA 1622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 953 KELEDLRAVNTQMCSERASLAQVVRQefAEQLAASQEETQRVKVEL---AELQARQQVEL---DEVHRRVKTALARKEA- 1025
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKKEAEEKKK--AEELKKAEEENKIKAAEEakkAEEDKKKAEEAkkaEEDEKKAAEALKKEAEe 1700
|
490 500
....*....|....*....|....*....
gi 294345409 1026 --AVNSLRKQHEAAVKRADHLEELLEQHK 1052
Cdd:PTZ00121 1701 akKAEELKKKEAEEKKKAEELKKAEEENK 1729
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
713-1053 |
2.46e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 2.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 713 LQQREEQAaqrhLRQAEELRQHLDREREVLGqqERERAQQRFEQHLEQEQR--ALEQQRRRL--------YNEVAEEKER 782
Cdd:TIGR02168 170 YKERRKET----ERKLERTRENLDRLEDILN--ELERQLKSLERQAEKAERykELKAELRELelallvlrLEELREELEE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 783 LGQQAARQRAELEELRQQLEESSAALTRALRAEFERSREEQERRH-QMELKALKDQLEAERQAwvascAKKEEAWLLTRE 861
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKeLYALANEISRLEQQKQI-----LRERLANLERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 862 RELKEEIRKGRDQEIEL--VIHRLEADMTLAKEESErAAESRVKRVRDKYEtelsELEQSERKLQERCSELKGRLGEAEG 939
Cdd:TIGR02168 319 EELEAQLEELESKLDELaeELAELEEKLEELKEELE-SLEAELEELEAELE----ELESRLEELEEQLETLRSKVAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 940 EKERLQSLVRQKEKELEDLRAvntqmcsERASLAQVVRQEFAEQLAASQEETQRVKVELAELQARQQVELDEVHRRVKTA 1019
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLED-------RRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL 466
|
330 340 350
....*....|....*....|....*....|....*..
gi 294345409 1020 ---LARKEAAVNSLRKQHEAAVKRADHLEELLEQHKG 1053
Cdd:TIGR02168 467 reeLEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
636-1052 |
4.57e-11 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 66.71 E-value: 4.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 636 QRCRERVAQMQEQHELEIKKLKELMSATEKI-----RREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHE 710
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELeeleaELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 711 AELQQREEQAAQRHLR-QAEELRQHLDREREVLGQQERERAQQRFEQH--LEQEQRALEQQRRRLYNEVAEEKERLgQQA 787
Cdd:COG4717 154 RLEELRELEEELEELEaELAELQEELEELLEQLSLATEEELQDLAEELeeLQQRLAELEEELEEAQEELEELEEEL-EQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 788 ARQRAELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEE 867
Cdd:COG4717 233 ENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 868 IRKGRDQEIELVIHRLEADMTLAKEESERAAES--RVKRVRDKYETELSELEQSERKlQERCSELKGRLGEAEGEKERLQ 945
Cdd:COG4717 313 LEELEEEELEELLAALGLPPDLSPEELLELLDRieELQELLREAEELEEELQLEELE-QEIAALLAEAGVEDEEELRAAL 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 946 SLVRQKEKELEDLRAVNTQMCSERASLAQVVR-----------QEFAEQLAASQEETQRVKVELAELQAR-QQVELDEVH 1013
Cdd:COG4717 392 EQAEEYQELKEELEELEEQLEELLGELEELLEaldeeeleeelEELEEELEELEEELEELREELAELEAElEQLEEDGEL 471
|
410 420 430
....*....|....*....|....*....|....*....
gi 294345409 1014 RRVKTALARKEAAVNSLRKQHEAAVKRADHLEELLEQHK 1052
Cdd:COG4717 472 AELLQELEELKAELRELAEEWAALKLALELLEEAREEYR 510
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
626-1012 |
1.56e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.47 E-value: 1.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 626 AVVAELKHGDQRCRERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEItvrgLEPEIQKLIAKHKQEVRRL 705
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKE----KREYEGYELLKEKEALERQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 706 RGLHEAELQQREEQAAQRHlRQAEELRQHLDREREVLGQQEReraqqRFEQHLEQEQRALEQQRRRLYNEVA------EE 779
Cdd:TIGR02169 239 KEAIERQLASLEEELEKLT-EEISELEKRLEEIEQLLEELNK-----KIKDLGEEEQLRVKEKIGELEAEIAslersiAE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 780 KERLGQQAARQRAELEELRQQLEESSAALTRALRaefersreeqerrhqmELKALKDQLEAERQAwvascAKKEEAWLLT 859
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIE----------------EERKRRDKLTEEYAE-----LKEELEDLRA 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 860 RERELKEEIRKGRDqeiELVIHRLEADMTLAKEESeraaesrVKRVRDKYETELSELEQSERKLQERCSELKGRLGEAEG 939
Cdd:TIGR02169 372 ELEEVDKEFAETRD---ELKDYREKLEKLKREINE-------LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 294345409 940 EKERLQSLVRQKEKELEDLRAvntQMCSERASLAQVvrqefAEQLAASQEETQRVKVELAELQARQQVELDEV 1012
Cdd:TIGR02169 442 EKEDKALEIKKQEWKLEQLAA---DLSKYEQELYDL-----KEEYDRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
314-1042 |
2.87e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.78 E-value: 2.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 314 EEAarKKAREEKARQARQAaiQEQQKRAQKASEAEHRRPKDrpETRAPEQPRPMQEPGCVTHPKANNAGASIYPTGPADP 393
Cdd:PTZ00121 1101 EEA--KKTETGKAEEARKA--EEAKKKAEDARKAEEARKAE--DARKAEEARKAEDAKRVEIARKAEDARKAEEARKAED 1174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 394 CPPASESSpeqwqspedKPQDIHSQGEARQDLAVSGSSRGKARARATLDDLLDTLKLLEEEPEPLPHPKAYHKDRYAWTD 473
Cdd:PTZ00121 1175 AKKAEAAR---------KAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKA 1245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 474 EEEDANsltaDNLEKFGKLSAAPGPPDDGTLLSEAKLQSimtflDEMEKSGQERPApwreslvlEAGSGSEGSTSVMRLK 553
Cdd:PTZ00121 1246 EEERNN----EEIRKFEEARMAHFARRQAAIKAEEARKA-----DELKKAEEKKKA--------DEAKKAEEKKKADEAK 1308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 554 LELEEKKQAMALLQRALAQQRDLTVRRVKETEKELTRQLRQQKEQYEAtiqrhlsfidqliedKKVLSEKCEAVVAELKH 633
Cdd:PTZ00121 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAA---------------DEAEAAEEKAEAAEKKK 1373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 634 GDQRCRERVAQMQEQhelEIKKLKELMSATEkirrekwinEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLrglHEAEL 713
Cdd:PTZ00121 1374 EEAKKKADAAKKKAE---EKKKADEAKKKAE---------EDKKKADELKKAAAAKKKADEAKKKAEEKKKA---DEAKK 1438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 714 QQREEQAAQRHLRQAEELRqhldREREVLGQQERERAQQRFEQHLEQEQRALEQQRRRlynEVAEEKERLGQQAARQRAE 793
Cdd:PTZ00121 1439 KAEEAKKADEAKKKAEEAK----KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA---EEAKKKADEAKKAAEAKKK 1511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 794 LEELRQQLEESSA-ALTRALRAEFERSREEQERRHQM-ELKALKDQLEAERQAWVASCAKKEEAWLLTRERelKEEIRKG 871
Cdd:PTZ00121 1512 ADEAKKAEEAKKAdEAKKAEEAKKADEAKKAEEKKKAdELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK--AEEAKKA 1589
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 872 RDQEIELVIHRLEADMTLAKEESERAAESRVKRVR-DKYETELSELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQ 950
Cdd:PTZ00121 1590 EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 951 KEKELEDlravntqmcSERASLAQVVRQEFAEQLAASQEETQRV----KVELAELQARQQV-ELDEVhRRVKTALARKEA 1025
Cdd:PTZ00121 1670 AEEDKKK---------AEEAKKAEEDEKKAAEALKKEAEEAKKAeelkKKEAEEKKKAEELkKAEEE-NKIKAEEAKKEA 1739
|
730
....*....|....*..
gi 294345409 1026 AVNSlRKQHEAAVKRAD 1042
Cdd:PTZ00121 1740 EEDK-KKAEEAKKDEEE 1755
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
555-949 |
3.76e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 3.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 555 ELEEKKQAMALLQRALAQQRDLTVRRVKETEKELTRQ-LRQQKEQYEATIqrhlsfidqliedkkvLSEKCEAVVAELKH 633
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQaLLKEKREYEGYE----------------LLKEKEALERQKEA 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 634 GDQRcRERVAQMQEQHELEIKKLKELMSATEKIRREkwINEKTKKIKEitvrGLEPEIQKLIAKHKQEVRRLRGlHEAEL 713
Cdd:TIGR02169 242 IERQ-LASLEEELEKLTEEISELEKRLEEIEQLLEE--LNKKIKDLGE----EEQLRVKEKIGELEAEIASLER-SIAEK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 714 QQREEQAAQRhLRQAEELRQHLDRErevlgqqereraqqrfeqhLEQEQRALEQQRRRlynevaeeKERLGQQAARQRAE 793
Cdd:TIGR02169 314 ERELEDAEER-LAKLEAEIDKLLAE-------------------IEELEREIEEERKR--------RDKLTEEYAELKEE 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 794 LEELRQQLEESSAALTRALRAEFERSREEQERRHQM-ELKALKDQLEAERQAwvascakkeeawLLTRERELKEEIRKGR 872
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREInELKRELDRLQEELQR------------LSEELADLNAAIAGIE 433
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 294345409 873 DQEIELVIHRLEADMTLAKEESERaaeSRVKRVRDKYETELSELEQSERKLQERCSELKGRLGEAEGEKERLQSLVR 949
Cdd:TIGR02169 434 AKINELEEEKEDKALEIKKQEWKL---EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVR 507
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
579-1052 |
3.95e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.93 E-value: 3.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 579 RRVKETEKELT-------------RQLRQQKEQYEATIQRhLSFIDQLIEDKKVLSEKCEAVVAELKHGDQRCRERVAQM 645
Cdd:PRK03918 193 ELIKEKEKELEevlreineisselPELREELEKLEKEVKE-LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEEL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 646 QEQ-HELE--IKKLKELM-SATEKIRREKWINEKTKKIKEI-----TVRGLEPEIQKLIAKHKQEVRRLRglheaELQQR 716
Cdd:PRK03918 272 KKEiEELEekVKELKELKeKAEEYIKLSEFYEEYLDELREIekrlsRLEEEINGIEERIKELEEKEERLE-----ELKKK 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 717 EEQaAQRHLRQAEELRQHLDREREVLGQQERERAQQRFEQHLEQEQRALEQQRRRLynEVAEEKERLGQQAARQRAELEE 796
Cdd:PRK03918 347 LKE-LEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKE--EIEEEISKITARIGELKKEIKE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 797 LRQQLEESSAA----------LTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKE 866
Cdd:PRK03918 424 LKKAIEELKKAkgkcpvcgreLTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 867 EIRKGRDQEIELVIHRLEADMTLAKEESERAA--ESRVKRVRDK------YETELSELEQSERKLQERCSELKGRLGE-- 936
Cdd:PRK03918 504 QLKELEEKLKKYNLEELEKKAEEYEKLKEKLIklKGEIKSLKKElekleeLKKKLAELEKKLDELEEELAELLKELEElg 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 937 ---AEGEKERLQSL---------VRQKEKELEDLRavntqmcSERASLAQVVRQEFAEqLAASQEETQRVKVELAELQAR 1004
Cdd:PRK03918 584 fesVEELEERLKELepfyneyleLKDAEKELEREE-------KELKKLEEELDKAFEE-LAETEKRLEELRKELEELEKK 655
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 294345409 1005 QQVE----LDEVHRRVKTALARKEAAVNSLRKQHEAAVKRADHLEELLEQHK 1052
Cdd:PRK03918 656 YSEEeyeeLREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE 707
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
726-1040 |
8.37e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 8.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 726 RQAEELRQHLDREREVLgQQERERAQQRFEQhLEQEQRALEQQRRRLYNEVAE---EKERLGQQAARQRAELEELRQQLE 802
Cdd:TIGR02168 666 AKTNSSILERRREIEEL-EEKIEELEEKIAE-LEKALAELRKELEELEEELEQlrkELEELSRQISALRKDLARLEAEVE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 803 ESSAALTRALRAEFERSREEQERRHQM-ELKALKDQLEAERQAWVASCAKKEEAWLLTRER--ELKEEIR--KGRDQEIE 877
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLeEAEEELAEAEAEIEELEAQIEQLKEELKALREAldELRAELTllNEEAANLR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 878 LVIHRLEADMTLAKEESERAAESRVKRvrdkyETELSELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKEKELED 957
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEEL-----SEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 958 LRAVNTQMcSERASLAQVVRQEFAEQLAASQEETQRVKVELAELQAR----QQVELDEVHRRVKTALARKEAAVNSLrKQ 1033
Cdd:TIGR02168 899 LSEELREL-ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlseeYSLTLEEAEALENKIEDDEEEARRRL-KR 976
|
....*..
gi 294345409 1034 HEAAVKR 1040
Cdd:TIGR02168 977 LENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
761-1050 |
1.06e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 761 EQRALEQQRRRLYNEVAEEKERLGQQAARQRAELEELRQQLEEssaaLTRALRAEFERSREEQERRHQMELKALKDQLEA 840
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEE----LEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 841 ERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAESRVKrvrDKYETELSELEQSE 920
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL---DELRAELTLLNEEA 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 921 RKLQERCSELKGRLGEAEgekERLQSLVRQKEKELEDLRAVNTQMCSERASLAqvvrqEFAEQLAASQEETQRVKVELAE 1000
Cdd:TIGR02168 820 ANLRERLESLERRIAATE---RRLEDLEEQIEELSEDIESLAAEIEELEELIE-----ELESELEALLNERASLEEALAL 891
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 294345409 1001 LQARQQvELDEVHRRVKTALARKEAAVNSLRKQHEAAVKRADHLEELLEQ 1050
Cdd:TIGR02168 892 LRSELE-ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
309-918 |
1.11e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.85 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 309 ELHRQEEAARK--KAREEKARQARQAAIQEQQKRAQKASEAEHRRPKDrpETRAPEQPRPMQEPGCVTH-PKANNAGASI 385
Cdd:PTZ00121 1234 EAKKDAEEAKKaeEERNNEEIRKFEEARMAHFARRQAAIKAEEARKAD--ELKKAEEKKKADEAKKAEEkKKADEAKKKA 1311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 386 YPTGPADPCPPASESSPEQWQSPEDKPQDIHSQGEARQDLAVSGSSRGKARARATLDDLLDTLKLLEEEPEPLPHPKAYH 465
Cdd:PTZ00121 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 466 KDRYAWTDEEEDANSLtadnlEKFGKLSAAPGPPDDGTLLSEA--KLQSIMTFLDEMEKSGQERPAPWRESLVLEAGSGS 543
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKA-----DELKKAAAAKKKADEAKKKAEEkkKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKA 1466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 544 EGSTSVMRLKLELEEKKQAMALLQRALAQQRDLTVRRVKETEKELTRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLS-E 622
Cdd:PTZ00121 1467 EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEkK 1546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 623 KCEAV--VAELKHGDQRCRERVAQMQEQHELEIKKLKELMSATEKIRREKWIN--EKTKKIKEITVRGLEPEIQKLIAKH 698
Cdd:PTZ00121 1547 KADELkkAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKlyEEEKKMKAEEAKKAEEAKIKAEELK 1626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 699 KQEVRRlRGLHEAELQQREEQAAQRHLRQAEElRQHLDREREVLGQQERERAQQRFEQHLEQEQRALEQQRRRlyNEVAE 778
Cdd:PTZ00121 1627 KAEEEK-KKVEQLKKKEAEEKKKAEELKKAEE-ENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE--AEEAK 1702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 779 EKERLGQQAARQRAELEELRQQLEESSAALTRALRAEFERSReeqerrhqmelKALKDQLEAERQAWVASCAKKEEAWLL 858
Cdd:PTZ00121 1703 KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK-----------KAEEAKKDEEEKKKIAHLKKEEEKKAE 1771
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 294345409 859 TRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAESRVKR---VRDKYETELSELEQ 918
Cdd:PTZ00121 1772 EIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGnlvINDSKEMEDSAIKE 1834
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
729-1046 |
1.27e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 1.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 729 EELRQHLDREREVLGQQERERAQQRFEQHLEQ-----EQRALEQQRRRLYNEVAEEKERLgqqaarqrAELEELRQQLEE 803
Cdd:TIGR02169 194 DEKRQQLERLRREREKAERYQALLKEKREYEGyellkEKEALERQKEAIERQLASLEEEL--------EKLTEEISELEK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 804 SSAALTRALRAEFERSREEQERrhqmELKALKDQLEaERQAWVASCAKKEEAwlltRERELKEEirKGRDQEIELVIHRL 883
Cdd:TIGR02169 266 RLEEIEQLLEELNKKIKDLGEE----EQLRVKEKIG-ELEAEIASLERSIAE----KERELEDA--EERLAKLEAEIDKL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 884 EADMTLAKEESER------AAESRVKRVRDKYETELSELEQSERK----------LQERCSELKGRLGEAEGEKERLQSL 947
Cdd:TIGR02169 335 LAEIEELEREIEEerkrrdKLTEEYAELKEELEDLRAELEEVDKEfaetrdelkdYREKLEKLKREINELKRELDRLQEE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 948 VRQKEKELEDLRAVNTQMCSERASLaQVVRQEFAEQLAASQEETQRVKVELAELQARqqveldevHRRVKTALARKEAAV 1027
Cdd:TIGR02169 415 LQRLSEELADLNAAIAGIEAKINEL-EEEKEDKALEIKKQEWKLEQLAADLSKYEQE--------LYDLKEEYDRVEKEL 485
|
330
....*....|....*....
gi 294345409 1028 NSLRKQHEAAVKRADHLEE 1046
Cdd:TIGR02169 486 SKLQRELAEAEAQARASEE 504
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
567-1052 |
3.13e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 3.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 567 QRALAQQRDLTVRRVKETEKELTRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVA-ELKHGDQRCRERVAQM 645
Cdd:PTZ00121 1218 RKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKAdELKKAEEKKKADEAKK 1297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 646 QEqhelEIKKLKELMSATEKIRR----EKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAA 721
Cdd:PTZ00121 1298 AE----EKKKADEAKKKAEEAKKadeaKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 722 QRHLRQAEELRQHLDREREvlGQQERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERLGQ--QAARQRAELEELRQ 799
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEEKKK--ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEakKKAEEAKKADEAKK 1451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 800 QLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEawlltRERELKEEIRKGRDQEielv 879
Cdd:PTZ00121 1452 KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA-----EAKKKADEAKKAEEAK---- 1522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 880 ihrlEADMTLAKEESERAAESRVKRVRDKYEtelsELEQSErklQERCSELKGRLGEAEGEKERLQSLVRQKEkeleDLR 959
Cdd:PTZ00121 1523 ----KADEAKKAEEAKKADEAKKAEEKKKAD----ELKKAE---ELKKAEEKKKAEEAKKAEEDKNMALRKAE----EAK 1587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 960 AVNTQMCSERASLAQVVRQEFAEQLAASQEEtqrvkvelaELQARQQVELDEVHRRVKTALARKEAAV---NSLRKQHEA 1036
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEA---------KIKAEELKKAEEEKKKVEQLKKKEAEEKkkaEELKKAEEE 1658
|
490
....*....|....*.
gi 294345409 1037 AVKRADHLEELLEQHK 1052
Cdd:PTZ00121 1659 NKIKAAEEAKKAEEDK 1674
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
699-1003 |
4.34e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 4.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 699 KQEVRRLRG-LHEAELQQRE-EQAAQRHLRQAEELRQHLDREREVLGQQERERAQQRFE-QHLEQEQRALEQQRRRLYNE 775
Cdd:TIGR02168 676 RREIEELEEkIEELEEKIAElEKALAELRKELEELEEELEQLRKELEELSRQISALRKDlARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 776 VAEEKERLGQQAAR------QRAELEELRQQLEESSAALTRALRAEFERSREEqerrhQMELKALKDqlEAERQAWVASC 849
Cdd:TIGR02168 756 LTELEAEIEELEERleeaeeELAEAEAEIEELEAQIEQLKEELKALREALDEL-----RAELTLLNE--EAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 850 AKKEEAWLLTRERELKEEIRKGRDQeIELVIHRLEaDMTLAKEESERAAESRVKRvRDKYETELSELEQSERKLQERCSE 929
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSED-IESLAAEIE-ELEELIEELESELEALLNE-RASLEEALALLRSELEELSEELRE 905
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 294345409 930 LKGRLGEAEGEKERLQSLVRQKEKELEDLRAVNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKVELAELQA 1003
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
648-1046 |
5.23e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 60.17 E-value: 5.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 648 QHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEpEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQ 727
Cdd:COG4717 65 KPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELE-ELEAELEELREELEKLEKLLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 728 AEELRQHLDREREVLgqQERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERLGQQAARQRAELEELRQQLEESSAA 807
Cdd:COG4717 144 LPERLEELEERLEEL--RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 808 LTRALRAEFERSReeqerrhQMELKALKDQLEAERQAWV---ASCAKKEEAWLLTRERELKEEIRKGRDQEIELVI---- 880
Cdd:COG4717 222 LEELEEELEQLEN-------ELEAAALEERLKEARLLLLiaaALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFllla 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 881 -----HRLEADMTLAKEESERAAESRVKRVRDKYETELSELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKEKE- 954
Cdd:COG4717 295 rekasLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAa 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 955 -LEDLRAVNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKVELAELQARQQVELDEVHRRVKTALARKEAAVNSLRKQ 1033
Cdd:COG4717 375 lLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREE 454
|
410
....*....|...
gi 294345409 1034 HEAAVKRADHLEE 1046
Cdd:COG4717 455 LAELEAELEQLEE 467
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
547-1050 |
6.74e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 6.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 547 TSVMRLKLELEEKKQAMALLQRAL----AQQRDLTVRrvKETEKELTRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSE 622
Cdd:TIGR02168 267 EKLEELRLEVSELEEEIEELQKELyalaNEISRLEQQ--KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 623 K----------CEAVVAELKHGDQRCRERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKI----KEITVRGLE 688
Cdd:TIGR02168 345 KleelkeelesLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERledrRERLQQEIE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 689 PEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAqRHLRQAEELRQHLDREREVLGQQERERAQQRFEQHLEQEQRALEQQ 768
Cdd:TIGR02168 425 ELLKKLEEAELKELQAELEELEEELEELQEELE-RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 769 RRRLYNEVAEEKERLGQQAARQrAELEELRQQLEES-SAAL------------TRALRAEFERSREEQERRHQMELKALK 835
Cdd:TIGR02168 504 FSEGVKALLKNQSGLSGILGVL-SELISVDEGYEAAiEAALggrlqavvvenlNAAKKAIAFLKQNELGRVTFLPLDSIK 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 836 DQL----EAERQAWVASC-------------------------------------------------------------- 849
Cdd:TIGR02168 583 GTEiqgnDREILKNIEGFlgvakdlvkfdpklrkalsyllggvlvvddldnalelakklrpgyrivtldgdlvrpggvit 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 850 --AKKEEAWLLTRERELKEeirkgrdqeielvihrLEADMTLAkEESERAAESRVKRVRDK---YETELSELEQSERKLQ 924
Cdd:TIGR02168 663 ggSAKTNSSILERRREIEE----------------LEEKIEEL-EEKIAELEKALAELRKEleeLEEELEQLRKELEELS 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 925 ERCSELKGRLGEAEGEKERLQSLVRQKEKELEDLRAVNTQMCSERASLaqvvRQEFAEQLAASQEETQRVKVELAELQA- 1003
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA----EEELAEAEAEIEELEAQIEQLKEELKAl 801
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 294345409 1004 -RQQVELDEVHRRVKTALARKEAAVNSLRKQHEAAVKRADHLEELLEQ 1050
Cdd:TIGR02168 802 rEALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
567-1059 |
8.00e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.15 E-value: 8.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 567 QRALAQQRDLTVRRVKETEK-ELTRQLRQQKEQYEAtiqRHLSFIDQLIEDKKvlSEKCEAVVAELKHGDQRCRERVAQM 645
Cdd:PTZ00121 1146 RKAEDAKRVEIARKAEDARKaEEARKAEDAKKAEAA---RKAEEVRKAEELRK--AEDARKAEAARKAEEERKAEEARKA 1220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 646 QEQHELE-IKKLKELMSATEKIRR--EKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRglHEAELQQREEQAAQ 722
Cdd:PTZ00121 1221 EDAKKAEaVKKAEEAKKDAEEAKKaeEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELK--KAEEKKKADEAKKA 1298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 723 RHLRQAEELRQHLDREREvlGQQERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERLGQQAARQRAELEELRQQLE 802
Cdd:PTZ00121 1299 EEKKKADEAKKKAEEAKK--ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 803 ESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHR 882
Cdd:PTZ00121 1377 KKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 883 LEADMTLAKEESERAAESRVKRVRDKYETElsELEQSERKLQERCSELKgrlgEAEGEKERLQSLVRQKE-KELEDLRAV 961
Cdd:PTZ00121 1457 KKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEAKKKADEAK----KAAEAKKKADEAKKAEEaKKADEAKKA 1530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 962 NTQMCSERASLAQVVRQ----EFAEQLAASQE---------ETQRVKVELAELQARQQVELDEVHRRVKTALARKEAAVN 1028
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKadelKKAEELKKAEEkkkaeeakkAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610
|
490 500 510
....*....|....*....|....*....|.
gi 294345409 1029 SLRKQHEAAVKRADHLEELLEQHKGSSLSSK 1059
Cdd:PTZ00121 1611 EAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
576-1052 |
1.39e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.90 E-value: 1.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 576 LTVRRVKETEKELTRQLRQQKEQYE-----ATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKHGDQRCRERVAQMQEQHE 650
Cdd:PRK02224 176 LGVERVLSDQRGSLDQLKAQIEEKEekdlhERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELET 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 651 LE--IKKLKELMSATEKIRRE--KWINEKTKKIKEITVR--------GLEPEIQKLIAKHKQEV-RRLRGLHEAELQQRe 717
Cdd:PRK02224 256 LEaeIEDLRETIAETEREREElaEEVRDLRERLEELEEErddllaeaGLDDADAEAVEARREELeDRDEELRDRLEECR- 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 718 eQAAQRHLRQAEELRQHLDrEREVLGQQERERAQqRFEQHLEQEQRALEQQRRRL------------------------- 772
Cdd:PRK02224 335 -VAAQAHNEEAESLREDAD-DLEERAEELREEAA-ELESELEEAREAVEDRREEIeeleeeieelrerfgdapvdlgnae 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 773 --YNEVAEEKERLGQQAARQRAELEELRQQLEESSAALT--------RALRAEFERSREEQERRHQMELKALKDQLEAER 842
Cdd:PRK02224 412 dfLEELREERDELREREAELEATLRTARERVEEAEALLEagkcpecgQPVEGSPHVETIEEDRERVEELEAELEDLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 843 QAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAESRVKrvRDKYETELSELEQSERK 922
Cdd:PRK02224 492 EEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAE--AEEKREAAAEAEEEAEE 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 923 LQERCSELKGRLGEAEGEKERLQSLVRQKEkELEDLRAVNTQMCSERASLAQVVRQEfAEQLAASQEETQRVKVE----- 997
Cdd:PRK02224 570 AREEVAELNSKLAELKERIESLERIRTLLA-AIADAEDEIERLREKREALAELNDER-RERLAEKRERKRELEAEfdear 647
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 294345409 998 LAELQARQQvELDEVHRRVKTALARKEAAVNSLRKQHEAAVKRADHLEELLEQHK 1052
Cdd:PRK02224 648 IEEAREDKE-RAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERRE 701
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
703-1017 |
3.82e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 3.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 703 RRLRGLHEAELQQREEqaaqrhLRQAEELRQHLDREREVLgQQERERAQQRFEQhLEQEQRALEQQRRRLYNEVaeekER 782
Cdd:TIGR02169 660 RAPRGGILFSRSEPAE------LQRLRERLEGLKRELSSL-QSELRRIENRLDE-LSQELSDASRKIGEIEKEI----EQ 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 783 LGQQAARQRAELEELRQQLEESSAALTralraefersreeQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRER 862
Cdd:TIGR02169 728 LEQEEEKLKERLEELEEDLSSLEQEIE-------------NVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP 794
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 863 ELKEEIRKGRDQ--EIELVIHRLEADMTLAKEESERAAESRVKRVRdkyetELSELEQSERKLQERCSELKGRLGEAEGE 940
Cdd:TIGR02169 795 EIQAELSKLEEEvsRIEARLREIEQKLNRLTLEKEYLEKEIQELQE-----QRIDLKEQIKSIEKEIENLNGKKEELEEE 869
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 294345409 941 KERLQSLVRQKEKELEDLRAVNTQMCSEraslAQVVRQEFAEQLAASQEETQRVKVELAELQARQQvELDEVHRRVK 1017
Cdd:TIGR02169 870 LEELEAALRDLESRLGDLKKERDELEAQ----LRELERKIEELEAQIEKKRKRLSELKAKLEALEE-ELSEIEDPKG 941
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
551-961 |
4.58e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 4.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 551 RLKLELEEKKQAMALLQRALAQQRDLtvRRVKETEKELTRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKcEAVVAE 630
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQL--EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA-AEEEAE 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 631 LKHGDQRCRERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKK--------IKEITVRGLEPEIQKLIAKHKQEV 702
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAdyegflegVKAALLLAGLRGLAGAVAVLIGVE 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 703 RRLRGLHEAELQQREEQAAQRHLRQAEELRQHLDRERE--------------VLGQQERERAQQRFEQHLEQEQRALEQQ 768
Cdd:COG1196 534 AAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratflpldkirarAALAAALARGAIGAAVDLVASDLREADA 613
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 769 RRRLYNEVAEEKERLGQQAARQRAELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVAS 848
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 849 CAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAEsrvkrvrdkYETELSELEQSERKLQERcS 928
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEE---------EELLEEEALEELPEPPDL-E 763
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 294345409 929 ELKGRLGEAEGE------------------KERLQSLVRQK---EKELEDLRAV 961
Cdd:COG1196 764 ELERELERLEREiealgpvnllaieeyeelEERYDFLSEQRedlEEARETLEEA 817
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
580-878 |
4.82e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 4.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 580 RVKETEKELTRQLRQQKEQYEATIQ--------RHLSfIDQLIEDKKVLSEKCEAVVAELKHGDQRCRERVAQMQEQHEl 651
Cdd:TIGR02168 190 RLEDILNELERQLKSLERQAEKAERykelkaelRELE-LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEE- 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 652 eikKLKELMSatEKIRREKWINEKTKKIKEIT--VRGLEPEIQKLIAKHKQEVRRLrglheAELQQREEQAAQRHLRQAE 729
Cdd:TIGR02168 268 ---KLEELRL--EVSELEEEIEELQKELYALAneISRLEQQKQILRERLANLERQL-----EELEAQLEELESKLDELAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 730 ELRQHLDREREVLGQQERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERLGQQAARQRAELEELRQQLEESSAALT 809
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 294345409 810 RA---LRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEawLLTRERELKEEIRKGRDQEIEL 878
Cdd:TIGR02168 418 RLqqeIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE--LREELEEAEQALDAAERELAQL 487
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
642-844 |
4.91e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.23 E-value: 4.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 642 VAQMQEQHELEikklKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQA- 720
Cdd:COG4913 231 VEHFDDLERAH----EALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELAr 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 721 AQRHLRQAEELRQHLDREREVLGQQERERAQQRFEQhLEQEQRALEQ---QRRRLYNEVAEEKERLGQQAARQRAELEEL 797
Cdd:COG4913 307 LEAELERLEARLDALREELDELEAQIRGNGGDRLEQ-LEREIERLEReleERERRRARLEALLAALGLPLPASAEEFAAL 385
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 294345409 798 RQQLEESSAALTRALRAEFERSREEQERRHQmeLKALKDQLEAERQA 844
Cdd:COG4913 386 RAEAAALLEALEEELEALEEALAEAEAALRD--LRRELRELEAEIAS 430
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
586-982 |
6.11e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 6.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 586 KELTRQLRQQKEQYE------ATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKHGDQRCRERVAQMQEQHELEIKKLKEL 659
Cdd:TIGR02168 680 EELEEKIEELEEKIAelekalAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 660 MSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLhEAELQQREEQAAQRHLRQAEELRQHLDRER 739
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDEL-RAELTLLNEEAANLRERLESLERRIAATER 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 740 EVlgqqerERAQQRFEQHLEQEQRAleqqrrrlynevAEEKERLGQQAARQRAELEELRQQLEESSAALTRALRAEFERS 819
Cdd:TIGR02168 839 RL------EDLEEQIEELSEDIESL------------AAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 820 REEQERRHqmELKALKDQLEAERQAWVASCAKKEEawLLTRERELKEEIRkgrdqeielVIHRLEADMTLAKEEseraae 899
Cdd:TIGR02168 901 EELRELES--KRSELRRELEELREKLAQLELRLEG--LEVRIDNLQERLS---------EEYSLTLEEAEALEN------ 961
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 900 srvkrvrdKYETELSELEQSERKLQERCSELkGR-----LGEAEGEKERLQSLVRQKE---KELEDLRAVNTQM---CSE 968
Cdd:TIGR02168 962 --------KIEDDEEEARRRLKRLENKIKEL-GPvnlaaIEEYEELKERYDFLTAQKEdltEAKETLEEAIEEIdreARE 1032
|
410
....*....|....*
gi 294345409 969 RASLA-QVVRQEFAE 982
Cdd:TIGR02168 1033 RFKDTfDQVNENFQR 1047
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
556-973 |
9.42e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.31 E-value: 9.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 556 LEEKKQAMALLQRALAQQRDLTVRRVKETEKELtRQLRQQKEQYEatiqrhlsfidQLIEDKKVLSEKCEAVVAELKHGD 635
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEEL-KEAEEKEEEYA-----------ELQEELEELEEELEELEAELEELR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 636 QRcRERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEI--TVRGLEPEIQKLIAKHKQEVRRLRGLHEAEL 713
Cdd:COG4717 116 EE-LEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELeeELEELEAELAELQEELEELLEQLSLATEEEL 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 714 QQREEQAaQRHLRQAEELRQHLDREREVLGQQERERAQQRFEQHLEQEQRALEQQR------------------------ 769
Cdd:COG4717 195 QDLAEEL-EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARlllliaaallallglggsllslil 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 770 --------------------RRLYNEVAEEKERLGQQAARQRAELEELRQQL------EESSAALTRALRAEFERSREEQ 823
Cdd:COG4717 274 tiagvlflvlgllallflllAREKASLGKEAEELQALPALEELEEEELEELLaalglpPDLSPEELLELLDRIEELQELL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 824 ERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKgrDQEIELVIHRLEADMTLAKEESERAAESRVK 903
Cdd:COG4717 354 REAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQEL--KEELEELEEQLEELLGELEELLEALDEEELE 431
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 904 RVRDKYETELSELEQSERKLQERCSELKGRLGEAEGEKErlqslVRQKEKELEDLRAVNTQMCSERASLA 973
Cdd:COG4717 432 EELEELEEELEELEEELEELREELAELEAELEQLEEDGE-----LAELLQELEELKAELRELAEEWAALK 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
551-842 |
1.12e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 551 RLKLELEEKKQAMALLQ----RALAQQRDLTVRRVKETEKELTRQLRQQKEQYEATIQRHLSF---IDQLIEDKKVLSEK 623
Cdd:TIGR02168 217 ELKAELRELELALLVLRleelREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELeeeIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 624 CEAVVAELKHGDQRcRERVAQMQEQHELEIKKLKElmsatEKIRREKWINEKTKKIKEITVR--GLEPEIQKLIAKHKQE 701
Cdd:TIGR02168 297 ISRLEQQKQILRER-LANLERQLEELEAQLEELES-----KLDELAEELAELEEKLEELKEEleSLEAELEELEAELEEL 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 702 VRRLRGLHEAELQQREEQAAqrHLRQAEELRQHLDREREVLGQQE--RERAQQRFEQHLEQEQRALEQQRRRLYNEVAEE 779
Cdd:TIGR02168 371 ESRLEELEEQLETLRSKVAQ--LELQIASLNNEIERLEARLERLEdrRERLQQEIEELLKKLEEAELKELQAELEELEEE 448
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 294345409 780 KERLGQQAARQRAELEELRQQLEESSAALTRALRaefersreeQERRHQMELKALKDQLEAER 842
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAER---------ELAQLQARLDSLERLQENLE 502
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
767-1050 |
2.66e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 2.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 767 QQRRRLYNEVA-------------EEKERLGQQAARQRAELEELRQQLEESSAALTRALRAEFERSREEQERrhQMELKA 833
Cdd:TIGR02169 153 VERRKIIDEIAgvaefdrkkekalEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYE--GYELLK 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 834 LKDQLEAERQAWVASCAKKEEawlltRERELKEEIrkgrdQEIELVIHRLEADMTLAKEESERAAESRVKRVRDKYETEL 913
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEE-----ELEKLTEEI-----SELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 914 SELEQSERKLQERCSELK---GRLGEAEGEKERLQSLVRQKEKELEDLRAVNTQMCSERASLAQVVR------QEFAEQL 984
Cdd:TIGR02169 301 AEIASLERSIAEKERELEdaeERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEdlraelEEVDKEF 380
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 294345409 985 AASQEETQRVKVELAELQAR-------------QQVELDEVHRRVKTALARKEAAVNSLRKQHEAAVKRADHLEELLEQ 1050
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKREinelkreldrlqeELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ 459
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
710-1058 |
4.96e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.21 E-value: 4.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 710 EAELQQREEQAAQRHLRQAEELRQHLDREREVLGQQEREraqqrfeqhLEQEQRALEQQRRRLYNEVAEEKERLGQQAAR 789
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKL---------KEQAKKALEYYQLKEKLELEEEYLLYLDYLKL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 790 QRAELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIR 869
Cdd:pfam02463 235 NEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 870 KGRDQEIELVIHRLEADMTLAKEESERAAESRVKRVRDKYETELSELEQSERKLQERCSEL-KGRLGEAEGEKERLQSLV 948
Cdd:pfam02463 315 KLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELlAKKKLESERLSSAAKLKE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 949 RQKEKELEDLRAVNTQMcsERASLAQVVRQEFAEQLAASQEETQRVKvELAELQARQQVELDEVHRRVKTALARKEAAVN 1028
Cdd:pfam02463 395 EELELKSEEEKEAQLLL--ELARQLEDLLKEEKKEELEILEEEEESI-ELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
330 340 350
....*....|....*....|....*....|
gi 294345409 1029 SLRKQHEAAVKRADHLEELLEQHKGSSLSS 1058
Cdd:pfam02463 472 DLLKETQLVKLQEQLELLLSRQKLEERSQK 501
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
550-1034 |
6.58e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 6.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 550 MRLKLELEEKKQAMALLQRALAQQRDlTVRRVKETEKELTRQLRQQKEQYEATIQRHLSF----IDQLIEDKKVLSEKCE 625
Cdd:COG4913 277 LRAALRLWFAQRRLELLEAELEELRA-ELARLEAELERLEARLDALREELDELEAQIRGNggdrLEQLEREIERLERELE 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 626 AVVAELKHGDQRCR----------ERVAQMQEQHELEIKKLKELMSATEKIRREkWINEKTKKIKEItvRGLEPEIQKLI 695
Cdd:COG4913 356 ERERRRARLEALLAalglplpasaEEFAALRAEAAALLEALEEELEALEEALAE-AEAALRDLRREL--RELEAEIASLE 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 696 AKHK---QEVRRLR-------GLHEAEL-------QQREEQAA-------------------QRHLRQAEE------LRQ 733
Cdd:COG4913 433 RRKSnipARLLALRdalaealGLDEAELpfvgeliEVRPEEERwrgaiervlggfaltllvpPEHYAAALRwvnrlhLRG 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 734 HLD--REREVLGQQERERA------------------------QQRF-------EQHLEQEQRALEQQRRRLYNEVAEEK 780
Cdd:COG4913 513 RLVyeRVRTGLPDPERPRLdpdslagkldfkphpfrawleaelGRRFdyvcvdsPEELRRHPRAITRAGQVKGNGTRHEK 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 781 ER---------LGQQAARQRAELEELRQQLEESSAALTRALRaefersreeqerrhqmELKALKDQLEAERQAWVAScak 851
Cdd:COG4913 593 DDrrrirsryvLGFDNRAKLAALEAELAELEEELAEAEERLE----------------ALEAELDALQERREALQRL--- 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 852 KEEAWLLTRERELKEEIRKGRDQeielvIHRLEADMtlakeeseraaesrvkrvrdkyeTELSELEQSERKLQERCSELK 931
Cdd:COG4913 654 AEYSWDEIDVASAEREIAELEAE-----LERLDASS-----------------------DDLAALEEQLEELEAELEELE 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 932 GRLGEAEGEKERLQSLVRQKEKELEDLRAVNTQMCSERaslAQVVRQEFAEQLAASQEEtqrvkvelaELQARQQVELDE 1011
Cdd:COG4913 706 EELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLA---RLELRALLEERFAAALGD---------AVERELRENLEE 773
|
570 580
....*....|....*....|...
gi 294345409 1012 VHRRVKTALARKEAAVNSLRKQH 1034
Cdd:COG4913 774 RIDALRARLNRAEEELERAMRAF 796
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
552-995 |
7.78e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.43 E-value: 7.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 552 LKLELEEKKQAMALLQRALAQQRDLTVRRVKETEKELTRQLRQQK---EQYEATIQRHLSFIDQLIEDKKVLSEKC---- 624
Cdd:TIGR00618 435 LQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEqihLQETRKKAVVLARLLELQEEPCPLCGSCihpn 514
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 625 -EAVVAELKHGDQRCRERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVR 703
Cdd:TIGR00618 515 pARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITV 594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 704 RLRGLHEAELQQREeqaaqrhlRQAEELRQHLDREREVLGQQERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERL 783
Cdd:TIGR00618 595 RLQDLTEKLSEAED--------MLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALS 666
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 784 GQQaarQRAELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEeawLLTRERE 863
Cdd:TIGR00618 667 IRV---LPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSD---LAAREDA 740
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 864 LKEEIRKGRDQEIELVIHRLEADMTlaKEESERAAESRVkrvrDKYETELSELEQSERKLQERCSELKGRLGEAEGE-KE 942
Cdd:TIGR00618 741 LNQSLKELMHQARTVLKARTEAHFN--NNEEVTAALQTG----AELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEiPS 814
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 294345409 943 RLQSLVRQKEKELEDLRAVNTQMCSERASLAQVVRQ--EFAEQLAASQEETQRVK 995
Cdd:TIGR00618 815 DEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQllKYEECSKQLAQLTQEQA 869
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
716-1051 |
8.55e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 53.42 E-value: 8.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 716 REEQAAQRHLRQAEELRQHL-DREREVLGQQERERAQQRFEQHLEQEQRALEQQ----RRRLynEVAEEKERLGQQAARQ 790
Cdd:PRK04863 276 RHANERRVHLEEALELRRELyTSRRQLAAEQYRLVEMARELAELNEAESDLEQDyqaaSDHL--NLVQTALRQQEKIERY 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 791 RAELEELRQQLEESSAAltRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVA------------SCAKKEEAWL- 857
Cdd:PRK04863 354 QADLEELEERLEEQNEV--VEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVqqtraiqyqqavQALERAKQLCg 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 858 ---LTRErELKEEIRKGRDQEIELVIHRLEADMTL-----AKEESERAAESrVKRVRDKYE--------TELSELEQSER 921
Cdd:PRK04863 432 lpdLTAD-NAEDWLEEFQAKEQEATEELLSLEQKLsvaqaAHSQFEQAYQL-VRKIAGEVSrseawdvaRELLRRLREQR 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 922 KLQERCSELKGRLGEAEGEKERLQSLVRQkekeLEDLRAVNTQMCSERASLaqvvrQEFAEQLAASQEETQRVKVELAEL 1001
Cdd:PRK04863 510 HLAEQLQQLRMRLSELEQRLRQQQRAERL----LAEFCKRLGKNLDDEDEL-----EQLQEELEARLESLSESVSEARER 580
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 294345409 1002 QARQQVELDEVHRRVKTALARK------EAAVNSLRKQHEAAVKRADHLEELLEQH 1051
Cdd:PRK04863 581 RMALRQQLEQLQARIQRLAARApawlaaQDALARLREQSGEEFEDSQDVTEYMQQL 636
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
534-926 |
8.82e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.44 E-value: 8.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 534 SLVLEAGSGSEGSTSVMRLKLELEEKKQAMALLQRALAQQRDLTVRRVKETEKELTRQLRQQKEQYEATIQRHLSFIDQL 613
Cdd:pfam02463 637 LKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLK 716
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 614 IEDKKVLsekceavvaelkhgDQRCRERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQK 693
Cdd:pfam02463 717 LEAEELL--------------ADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREK 782
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 694 LIAKHKQEvrrlrGLHEAELQQREEQAAQRHLRQAEELRQHLDREREVLGQQEREraqqrfEQHLEQEQRALEQQRRRLY 773
Cdd:pfam02463 783 TEKLKVEE-----EKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKE------EELEELALELKEEQKLEKL 851
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 774 NEVAEEKERLGQQAARQRAELEELRQQLEESsaaltRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKE 853
Cdd:pfam02463 852 AEEELERLEEEITKEELLQELLLKEEELEEQ-----KLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEE 926
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 294345409 854 EAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAESRVK-----RVRDKYETELSELEQSERKLQER 926
Cdd:pfam02463 927 AEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNlmaieEFEEKEERYNKDELEKERLEEEK 1004
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
687-1039 |
1.11e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.05 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 687 LEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELRQHLDREREVLGQQERERAQQRFEQHLEQEQRALE 766
Cdd:pfam02463 175 LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 767 QQRRRLYNEVAEEKERLGQQ--AARQRAELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQA 844
Cdd:pfam02463 255 SSKQEIEKEEEKLAQVLKENkeEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEK 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 845 WVASCAKKEEAWLLTRERELKEEIRKGRDQEiELVIHRLEADMTLAKEESERaaESRVKRVRDKYETELSELEQSERKLQ 924
Cdd:pfam02463 335 EEIEELEKELKELEIKREAEEEEEEELEKLQ-EKLEQLEEELLAKKKLESER--LSSAAKLKEEELELKSEEEKEAQLLL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 925 ERCSELKGRLgEAEGEKERLQSLVRQKEKELEDLRAVNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKVELAELQAR 1004
Cdd:pfam02463 412 ELARQLEDLL-KEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
330 340 350
....*....|....*....|....*....|....*
gi 294345409 1005 QqvELDEVHRRVKTALARKEAAVNSLRKQHEAAVK 1039
Cdd:pfam02463 491 S--RQKLEERSQKESKARSGLKVLLALIKDGVGGR 523
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
636-1054 |
1.30e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.81 E-value: 1.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 636 QRCRERVAQMQEQHELEIKKLKELMS-----ATEKIRREKWINEKTKKIKEITVRGLEpEIQKLIAKHKQEVRRLRGLHE 710
Cdd:pfam15921 263 QQHQDRIEQLISEHEVEITGLTEKASsarsqANSIQSQLEIIQEQARNQNSMYMRQLS-DLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 711 AELQQREEQ--AAQRHLRQAEELRQHLDREREVLGQQereraQQRFEQHLEQEQRALEQQRrrlynevaEEKERLGQQAA 788
Cdd:pfam15921 342 DKIEELEKQlvLANSELTEARTERDQFSQESGNLDDQ-----LQKLLADLHKREKELSLEK--------EQNKRLWDRDT 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 789 RQRAELEELRQQLEESSAALTRAlraefersreeqerrhQMELKALKDQLEAERQAWVASCAKKEEAW----LLTREREL 864
Cdd:pfam15921 409 GNSITIDHLRRELDDRNMEVQRL----------------EALLKAMKSECQGQMERQMAAIQGKNESLekvsSLTAQLES 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 865 KEEIRKGRDQEIELVIHRLE------ADMTLAKEESERAAE---SRVKRVRDKYETELSELEQSE------RKLQERCSE 929
Cdd:pfam15921 473 TKEMLRKVVEELTAKKMTLEssertvSDLTASLQEKERAIEatnAEITKLRSRVDLKLQELQHLKnegdhlRNVQTECEA 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 930 LKGRLgeaeGEKERLQSLVRQKEKELEDLRAVNTQMcserASLAQVVRQEFAEQLAASQEETQRVKVelaeLQARQQVEL 1009
Cdd:pfam15921 553 LKLQM----AEKDKVIEILRQQIENMTQLVGQHGRT----AGAMQVEKAQLEKEINDRRLELQEFKI----LKDKKDAKI 620
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 294345409 1010 DEVHRRVKTALARKEAAVNSLRKQHEAAVKRADHLEELLEQHKGS 1054
Cdd:pfam15921 621 RELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTS 665
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
504-803 |
1.97e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 1.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 504 LLSEAKLQSIMTFLDEMEKSGQERPAPWRESLVLEAGSGSEGSTSVMRLKLELEEkkqamALLQRALAQQRDLTVRRVKE 583
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE-----AALEAALAAALQNIVVEDDE 557
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 584 TEKELTRQLRQQKEQyEATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKHGDQRCRERVAQMQEQHELEIKKLKELMSAT 663
Cdd:COG1196 558 VAAAAIEYLKAAKAG-RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAAL 636
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 664 EKIRREKW-INEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELRQHLDRERE-V 741
Cdd:COG1196 637 RRAVTLAGrLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEeR 716
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 294345409 742 LGQQERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERLGQQAARQRAELEELRQQLEE 803
Cdd:COG1196 717 LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
716-1054 |
2.21e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.88 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 716 REEQAAQRHLRQAEELRQHLDREREVlgqQERERAQQRFEQ----HL--------EQEQRALEQQRRRLYNEVAeekerl 783
Cdd:PRK04863 784 REKRIEQLRAEREELAERYATLSFDV---QKLQRLHQAFSRfigsHLavafeadpEAELRQLNRRRVELERALA------ 854
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 784 gqqaaRQRAELEELRQQLEESSAALTrALRAEFERSREEQERRHQMELKALKDQLEAERQAwvASCAKKEEAWLltreRE 863
Cdd:PRK04863 855 -----DHESQEQQQRSQLEQAKEGLS-ALNRLLPRLNLLADETLADRVEEIREQLDEAEEA--KRFVQQHGNAL----AQ 922
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 864 LKEEIRKGRDQEIElvIHRLEADMTLAKEESERA-------AESRVKRVRDKYETELSELEQsERKLQERcseLKGRLGE 936
Cdd:PRK04863 923 LEPIVSVLQSDPEQ--FEQLKQDYQQAQQTQRDAkqqafalTEVVQRRAHFSYEDAAEMLAK-NSDLNEK---LRQRLEQ 996
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 937 AEGEKERLQSLVRQKEKELEDLRAVNTQMCSERASLAQVVrQEFAEQLaasQEETQRVKVELAELQARQQVELDEVHRR- 1015
Cdd:PRK04863 997 AEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQML-QELKQEL---QDLGVPADSGAEERARARRDELHARLSAn 1072
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 294345409 1016 ------VKTALARKEAAVNSLRKQHEAAVKRADHLEELLEQHKGS 1054
Cdd:PRK04863 1073 rsrrnqLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAG 1117
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
558-1057 |
2.80e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.51 E-value: 2.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 558 EKKQAMALLQRALAQQRDLTVRRVKETEKELTRQLRQQKEQYEATiQRHLSFIDQLIEDKKVLSEKCEAVVAELKHGdQR 637
Cdd:TIGR00618 197 ELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQS-HAYLTQKREAQEEQLKKQQLLKQLRARIEEL-RA 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 638 CRERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEiTVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQRE 717
Cdd:TIGR00618 275 QEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQS-KMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQ 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 718 EQAAQRHLRQAEELRQHLDREREVLgqqERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERLGQQAARQ----RAE 793
Cdd:TIGR00618 354 EIHIRDAHEVATSIREISCQQHTLT---QHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQgqlaHAK 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 794 LEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAwlLTRERELKEEIRKGRD 873
Cdd:TIGR00618 431 KQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVV--LARLLELQEEPCPLCG 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 874 QEIELVIHRLEADMTLAKEESERAAESRVKrvrdKYETELSELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKEK 953
Cdd:TIGR00618 509 SCIHPNPARQDIDNPGPLTRRMQRGEQTYA----QLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKE 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 954 ELEDLRAVNTQMCSERASLAQVVRQ---EFAEQLAASQEET--QRVKVELAELQARQQVELDEVHRRVKTALARKEAAVN 1028
Cdd:TIGR00618 585 DIPNLQNITVRLQDLTEKLSEAEDMlacEQHALLRKLQPEQdlQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHA 664
|
490 500
....*....|....*....|....*....
gi 294345409 1029 SLRKQHEAAVKRADHLEELLEQHKGSSLS 1057
Cdd:TIGR00618 665 LSIRVLPKELLASRQLALQKMQSEKEQLT 693
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
559-1035 |
3.04e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 3.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 559 KKQAMALLQRALAQQRDLTvRRVKETEKELTRQ---LRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAELK--- 632
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQ-RRLNESNELHEKQkfyLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQntv 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 633 HGDQRCRERVAQMQEQHELEIKKLKELMSATEKIRREKWI------NEKTKKIKE------ITVRGLEPEIQKLIAKHKQ 700
Cdd:pfam15921 152 HELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSilvdfeEASGKKIYEhdsmstMHFRSLGSAISKILRELDT 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 701 EVRRLRGlheaELQQREEQAaqrhlrqaEELRQHLDREREVLGQQERERAQQRFEQHlEQEQRALEQQ---RRRLYNEVA 777
Cdd:pfam15921 232 EISYLKG----RIFPVEDQL--------EALKSESQNKIELLLQQHQDRIEQLISEH-EVEITGLTEKassARSQANSIQ 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 778 EEKERLGQQAARQRAELEELRQQLEESSAALTRALRAEFersreeqerrhqmelKALKDQLEAERQAWVASCAKKEEAwl 857
Cdd:pfam15921 299 SQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAK---------------RMYEDKIEELEKQLVLANSELTEA-- 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 858 LTRERELKEEIRKGRDQEIELV--IHRLEADMTLAKEESERAAE---------SRVKRVRDKYETELSELEQSERKLQER 926
Cdd:pfam15921 362 RTERDQFSQESGNLDDQLQKLLadLHKREKELSLEKEQNKRLWDrdtgnsitiDHLRRELDDRNMEVQRLEALLKAMKSE 441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 927 CS-ELKGRLGEAEGEKERLQ---SLVRQKEKELEDLRAVNTQMCSERASLAQVVRQefAEQLAASQEETQR----VKVEL 998
Cdd:pfam15921 442 CQgQMERQMAAIQGKNESLEkvsSLTAQLESTKEMLRKVVEELTAKKMTLESSERT--VSDLTASLQEKERaieaTNAEI 519
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 294345409 999 AELQARQQVELDEV--------HRR--------VKTALARKEAAVNSLRKQHE 1035
Cdd:pfam15921 520 TKLRSRVDLKLQELqhlknegdHLRnvqteceaLKLQMAEKDKVIEILRQQIE 572
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
573-953 |
3.23e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 3.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 573 QRDLTVRRVKETEKELTRQLRQQKEQYEAT-IQRHLSFIDQLIEDKKVLSEKCEAVVAELKHGDQRCRERVAQMQEQHEL 651
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLkEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 652 EIKKLKELMSATEKIRREKWINEKTKKIKEITvrglepeiqkliakhkqevrrlrglHEAELQQREEQAAQRHLRQAEEL 731
Cdd:pfam02463 253 IESSKQEIEKEEEKLAQVLKENKEEEKEKKLQ-------------------------EEELKLLAKEEEELKSELLKLER 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 732 RQHLDREREVLGQQERERAQQrfEQHLEQEQRALEQQrrrLYNEVAEEKERLGQQAARQRAELEELRQQLEESSAALTRA 811
Cdd:pfam02463 308 RKVDDEEKLKESEKEKKKAEK--ELKKEKEEIEELEK---ELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 812 LRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKgrdQEIELVIHRLEADMTLAK 891
Cdd:pfam02463 383 SERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIEL---KQGKLTEEKEELEKQELK 459
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 294345409 892 EESERAAESRVKRVRDKYETELSELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKEK 953
Cdd:pfam02463 460 LLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVG 521
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
760-1006 |
3.28e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 3.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 760 QEQRALEQQRRRLYNEVAEEKERLgQQAARQRAELEELRQQLEESSAALTRALRAEFERSREEqerrhQMELKALKDQLE 839
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKEL-AALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-----EAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 840 AERQAwvascakkeeawLLTRERELKEEIRK----GRDQEIELVIHRLEADMTLAKEESERAAESRVKRVRDKYETELSE 915
Cdd:COG4942 94 ELRAE------------LEAQKEELAELLRAlyrlGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 916 LEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKEKELEDLRAvntqmcseraslaqvVRQEFAEQLAASQEETQRVK 995
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEK---------------ELAELAAELAELQQEAEELE 226
|
250
....*....|.
gi 294345409 996 VELAELQARQQ 1006
Cdd:COG4942 227 ALIARLEAEAA 237
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
690-885 |
3.29e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 3.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 690 EIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELRQHLDREREV-LGQQERERAQQRFEQhLEQEQRALEQQ 768
Cdd:COG4913 239 RAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLeLLEAELEELRAELAR-LEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 769 RRRLYNEVAEEKERLGQQAARQRAELEELRQQLEESSAALTRALR--AEFERSREEQERRHQMELKALKDQLEAERQAWV 846
Cdd:COG4913 318 LDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRArlEALLAALGLPLPASAEEFAALRAEAAALLEALE 397
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 294345409 847 AscakkEEAWLLTRERELKEEIRKGRDQ--EIELVIHRLEA 885
Cdd:COG4913 398 E-----ELEALEEALAEAEAALRDLRRElrELEAEIASLER 433
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
725-1057 |
3.61e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.49 E-value: 3.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 725 LRQAEELRQHLDR----EREVLGQQERERAQQRFEQHLEQEQRALEQQRRRLYNEV--AEEKERLGQQAARQ-------R 791
Cdd:COG3096 274 MRHANERRELSERalelRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYqaASDHLNLVQTALRQqekieryQ 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 792 AELEELRQQLEESSAAltRALRAEFERSREEQERRHQMELKALKDQLE--------------AERQAWVAscakKEEAWL 857
Cdd:COG3096 354 EDLEELTERLEEQEEV--VEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyqqaldvqqtraiQYQQAVQA----LEKARA 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 858 LTREREL-----KEEIRKGRDQEIELVIHRLEADMTL-----AKEESERAAESrVKRVRDkyETELSELEQSERKLQERC 927
Cdd:COG3096 428 LCGLPDLtpenaEDYLAAFRAKEQQATEEVLELEQKLsvadaARRQFEKAYEL-VCKIAG--EVERSQAWQTARELLRRY 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 928 SELKGRLGEAEGEKERLQSLvRQKEKELEDLRAVNTQMCsERASLAQVVRQEFAEQLAASQEETQRVKVELAELQARQ-- 1005
Cdd:COG3096 505 RSQQALAQRLQQLRAQLAEL-EQRLRQQQNAERLLEEFC-QRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRse 582
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 294345409 1006 -QVELDEVHRRVKtALARKE-------AAVNSLRKQHEAAVKRA----DHLEELLEQHKGSSLS 1057
Cdd:COG3096 583 lRQQLEQLRARIK-ELAARApawlaaqDALERLREQSGEALADSqevtAAMQQLLEREREATVE 645
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
764-1059 |
4.59e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.99 E-value: 4.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 764 ALEQQRRRLYNEVAEEKERLGQQAARQRAELEELRQQLEESSAALTRALRAEFERSREEQERRHQMElkALKDQLE---A 840
Cdd:pfam12128 597 ASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQ--SEKDKKNkalA 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 841 ERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEA---------------DMTLAKEESERAAEsrVKRV 905
Cdd:pfam12128 675 ERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYwqvvegaldaqlallKAAIAARRSGAKAE--LKAL 752
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 906 RDKYETELSEL---EQSERKLQERCSELKGRLGEAEG-EKERLQSLVRQKEKELEDLRAVNTQmCSERASLAQVVRQEFA 981
Cdd:pfam12128 753 ETWYKRDLASLgvdPDVIAKLKREIRTLERKIERIAVrRQEVLRYFDWYQETWLQRRPRLATQ-LSNIERAISELQQQLA 831
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 982 EQLAASQEETQRVKVELAELQArQQVELDEVHRRVK---TALARKEAAVNSLRKQHEAAvKRADHLEELLEQHKGSSLSS 1058
Cdd:pfam12128 832 RLIADTKLRRAKLEMERKASEK-QQVRLSENLRGLRcemSKLATLKEDANSEQAQGSIG-ERLAQLEDLKLKRDYLSESV 909
|
.
gi 294345409 1059 K 1059
Cdd:pfam12128 910 K 910
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
552-912 |
5.65e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 5.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 552 LKLELEEKKQAMALLQRALAQQRDLTvRRVKETEKELTRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAEL 631
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEELE-AELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 632 KHGDQRCRERVAQMQEQHELE-IKKLKEL-----------MSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHK 699
Cdd:COG4717 223 EELEEELEQLENELEAAALEErLKEARLLlliaaallallGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 700 Q--EVRRLRGLHEAELQQREEQAAQRHLRQAEELRQHLDREREVLGQQERERAQQRFEQHLEQEQraLEQQRRRLYNEVA 777
Cdd:COG4717 303 EaeELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEE--LEQEIAALLAEAG 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 778 EEKERLGQQAARQRAELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAerqawvascAKKEEAWL 857
Cdd:COG4717 381 VEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEE---------LEEELEEL 451
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 294345409 858 LTRERELKEEIRK----GRDQEIELVIHRLEADMTLAKEE--SERAAESRVKRVRDKYETE 912
Cdd:COG4717 452 REELAELEAELEQleedGELAELLQELEELKAELRELAEEwaALKLALELLEEAREEYREE 512
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
830-1045 |
6.38e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 6.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 830 ELKALKDQLEAERQAwVASCAKKEEAWllTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAaesrvkrvrdky 909
Cdd:COG4913 243 ALEDAREQIELLEPI-RELAERYAAAR--ERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARL------------ 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 910 ETELSELEQSERKLQERCSELKGRLGEAEGE-KERLQSLVRQKEKELEDLRAvntqmcsERASLaqvvrQEFAEQLAASQ 988
Cdd:COG4913 308 EAELERLEARLDALREELDELEAQIRGNGGDrLEQLEREIERLERELEERER-------RRARL-----EALLAALGLPL 375
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 294345409 989 EETQRVKVELAELQARQQVELDEVHRRVKTALARKEAAVNSLRKQHEAAVKRADHLE 1045
Cdd:COG4913 376 PASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
567-870 |
6.51e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 50.34 E-value: 6.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 567 QRALAQQRDLTVRRVKETEKELTRQLRQQKEQYEATIQ------RHLSFIDQLIEDKKVLSEKCEA---VVAELKHGDQR 637
Cdd:PRK04863 301 QLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNlvqtalRQQEKIERYQADLEELEERLEEqneVVEEADEQQEE 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 638 CRERVaqmqEQHELEIKKLKELMS---------------------ATEKIRR------------EKWINEKTKKIKEITV 684
Cdd:PRK04863 381 NEARA----EAAEEEVDELKSQLAdyqqaldvqqtraiqyqqavqALERAKQlcglpdltadnaEDWLEEFQAKEQEATE 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 685 RGLEPEiQKL---------IAKHKQEVRRLRGLHEAELQQREEQAAQRHLR-------QAEELRQHL-DREREVLGQQER 747
Cdd:PRK04863 457 ELLSLE-QKLsvaqaahsqFEQAYQLVRKIAGEVSRSEAWDVARELLRRLReqrhlaeQLQQLRMRLsELEQRLRQQQRA 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 748 ERAQQRFEQH----------LEQEQRALEQQRRRLynevAEEKERLGQQAARQRAELEELRQQLEE----------SSAA 807
Cdd:PRK04863 536 ERLLAEFCKRlgknlddedeLEQLQEELEARLESL----SESVSEARERRMALRQQLEQLQARIQRlaarapawlaAQDA 611
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 294345409 808 LTRaLRAEFERSREEQerrhQMELKALKDQLEAERQAWVascakkEEAWLLTRERELKEEIRK 870
Cdd:PRK04863 612 LAR-LREQSGEEFEDS----QDVTEYMQQLLERERELTV------ERDELAARKQALDEEIER 663
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
757-1047 |
1.01e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.74 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 757 HLEQEQRALEQQRRRLYNEVAEEkERLGQQAARQRAELEElRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKD 836
Cdd:pfam17380 276 HIVQHQKAVSERQQQEKFEKMEQ-ERLRQEKEEKAREVER-RRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERI 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 837 QLEaERQAWVASCAKKEEAWLLTRERELkEEIRKGRDQEIELVIHRLEADMTLAKEESER---AAESRVKRVRDKYETEL 913
Cdd:pfam17380 354 RQE-ERKRELERIRQEEIAMEISRMREL-ERLQMERQQKNERVRQELEAARKVKILEEERqrkIQQQKVEMEQIRAEQEE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 914 SELEQSERKLQERCSELKgRLGEAEGEKERLQSLVRQKEKELEDLRAVNTQMCSERASLAQ----VVRQEFAEQLAASQE 989
Cdd:pfam17380 432 ARQREVRRLEEERAREME-RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEqrrkILEKELEERKQAMIE 510
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 294345409 990 ETQRVKVELAELQARQQVELDEVHRRVKTALARKEAAVNSLRKQHEAAVKRADHLEEL 1047
Cdd:pfam17380 511 EERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL 568
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
615-945 |
1.01e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.51 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 615 EDKKVLSEKCEAVVAELKHGDQRCRERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKL 694
Cdd:pfam07888 62 ERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 695 IAKHKQEvrrlrglhEAELQQREEQAAQRHLRQAEELRQHLDREREVLGQQERERAQQRFEQHLEQEQRALEQQRRRLYN 774
Cdd:pfam07888 142 TQRVLER--------ETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQD 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 775 EVAEEKERLGqQAARQRAELEELRQQL----------EESSAALTRALRAEFERSREEQERRHQMELKAlkdqLEAERQA 844
Cdd:pfam07888 214 TITTLTQKLT-TAHRKEAENEALLEELrslqerlnasERKVEGLGEELSSMAAQRDRTQAELHQARLQA----AQLTLQL 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 845 WVASCAKKEEAWLLTRERE-LKEEIRKGRDQEIELVIHRLEADMTLAKEESER-AAESRVKRVRDKYETELSEleqSERK 922
Cdd:pfam07888 289 ADASLALREGRARWAQEREtLQQSAEADKDRIEKLSAELQRLEERLQEERMEReKLEVELGREKDCNRVQLSE---SRRE 365
|
330 340
....*....|....*....|...
gi 294345409 923 LQercsELKGRLGEAEGEKERLQ 945
Cdd:pfam07888 366 LQ----ELKASLRVAQKEKEQLQ 384
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
731-955 |
1.08e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 731 LRQHLDREREVLG---QQERERAQQRFEQhLEQEQRALEQQRRRlYNEVAEEKERLGQQAARQRAELEELRQQLEEssaa 807
Cdd:COG4717 47 LLERLEKEADELFkpqGRKPELNLKELKE-LEEELKEAEEKEEE-YAELQEELEELEEELEELEAELEELREELEK---- 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 808 LTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWvascakkeeawlltreRELKEEIRKGRDQeielvIHRLEADM 887
Cdd:COG4717 121 LEKLLQLLPLYQELEALEAELAELPERLEELEERLEEL----------------RELEEELEELEAE-----LAELQEEL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 294345409 888 TLAKEESERAAESRVKRVRDKYE---TELSELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKEKEL 955
Cdd:COG4717 180 EELLEQLSLATEEELQDLAEELEelqQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARL 250
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
552-1011 |
1.40e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.20 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 552 LKLELEEKKQAMALLQRAlaQQRDLTVRRVKETEKELTRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLsekcEAVVAEL 631
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPL--DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVL----EKELKHL 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 632 KHGDQRCRERVAQMQEQHEleikklkelmSATEKIRREKWINEKTKKIKEITvrglepeiqkliakhkQEVRRLRGLHEA 711
Cdd:TIGR00618 232 REALQQTQQSHAYLTQKRE----------AQEEQLKKQQLLKQLRARIEELR----------------AQEAVLEETQER 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 712 ELQQREEQAAQRHLRQAEELRQHLDREREVLGQQERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERLGQQAARQR 791
Cdd:TIGR00618 286 INRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVAT 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 792 AELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVA-----SCAKKEEAWLLTRERELKE 866
Cdd:TIGR00618 366 SIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDlqgqlAHAKKQQELQQRYAELCAA 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 867 EIRKGRDQEIELVIHRLEADMTLAKEESERAAES----RVKRVRDKYETELSELEQSERKLQERCSELKGRL---GEAEG 939
Cdd:TIGR00618 446 AITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEqihlQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARqdiDNPGP 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 940 EKERLQSL---VRQKEKELEDLRAVNTQMCSERASL---AQVVRQEF---AEQLAASQEETQRVKVELAELQARQQVELD 1010
Cdd:TIGR00618 526 LTRRMQRGeqtYAQLETSEEDVYHQLTSERKQRASLkeqMQEIQQSFsilTQCDNRSKEDIPNLQNITVRLQDLTEKLSE 605
|
.
gi 294345409 1011 E 1011
Cdd:TIGR00618 606 A 606
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
653-1011 |
1.83e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.92 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 653 IKKLKELMSATEK----IRREKWINEKTKKIKeitvrglepeiQKLIAKHKQEVRRLrgLHEAELQQREEQAAQRHLRQA 728
Cdd:COG5022 796 FIKLQPLLSLLGSrkeyRSYLACIIKLQKTIK-----------REKKLRETEEVEFS--LKAEVLIQKFGRSLKAKKRFS 862
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 729 EELRQHLdrerevlgqqeRERAQQRFEQhLEQEQRALEQQRRRLyNEVAEEKERLGQqaarqraELEELRQQLEESsaal 808
Cdd:COG5022 863 LLKKETI-----------YLQSAQRVEL-AERQLQELKIDVKSI-SSLKLVNLELES-------EIIELKKSLSSD---- 918
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 809 tralraefersreeqerrhqmELKALKDQLEaerqawvascakkeeawLLTRERELKEEIRKGRDQEIELVihrleadmT 888
Cdd:COG5022 919 ---------------------LIENLEFKTE-----------------LIARLKKLLNNIDLEEGPSIEYV--------K 952
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 889 LAKEESERAAESRVKRVRDKYETELSELEQSERKLQERCSELKG---RLGEAEGEKERLQ---SLVRQKEKELEDLRAVN 962
Cdd:COG5022 953 LPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNfkkELAELSKQYGALQestKQLKELPVEVAELQSAS 1032
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 294345409 963 TQMCSERASLAQvvRQEFAEQLAASQEETQRVKVELAELQARQQVELDE 1011
Cdd:COG5022 1033 KIISSESTELSI--LKPLQKLKGLLLLENNQLQARYKALKLRRENSLLD 1079
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
642-903 |
2.10e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 642 VAQMQEQHELEikklKELMSATEKIRREKWINEKTKKIKEITVRGLEpEIQKLIAKHKQEVRRLrglhEAELQQREEQAA 721
Cdd:COG4942 16 AAQADAAAEAE----AELEQLQQEIAELEKELAALKKEEKALLKQLA-ALERRIAALARRIRAL----EQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 722 qRHLRQAEELRQHLDREREVLGqqERERAQQRFEQH------LEQEQRALEQQRRRLYNEVAEEKERLGQQAARQRAELE 795
Cdd:COG4942 87 -ELEKEIAELRAELEAQKEELA--ELLRALYRLGRQpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 796 ELRQQLEESSAALTRALRaefersreeqerrhqmELKALKDQLEAERQAwvascAKKEEAWLLTRERELKEEIRKGRDQE 875
Cdd:COG4942 164 ALRAELEAERAELEALLA----------------ELEEERAALEALKAE-----RQKLLARLEKELAELAAELAELQQEA 222
|
250 260 270
....*....|....*....|....*....|
gi 294345409 876 IEL--VIHRLEADMTLAKEESERAAESRVK 903
Cdd:COG4942 223 EELeaLIARLEAEAAAAAERTPAAGFAALK 252
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
639-956 |
2.26e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 639 RERVAQMQEQHELEIKKLKELMSATE----KIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQ 714
Cdd:pfam17380 298 QERLRQEKEEKAREVERRRKLEEAEKarqaEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 715 QREEQAAQRHLRQAEELRQHLDREREV-LGQQERERAQQRFEQHLE----QEQRALEQQRRRLYNEVAEEKERLGQQAAR 789
Cdd:pfam17380 378 RELERLQMERQQKNERVRQELEAARKVkILEEERQRKIQQQKVEMEqiraEQEEARQREVRRLEEERAREMERVRLEEQE 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 790 QRAELEELRQQLEESsaaltRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVAscakkeeawlltrerelKEEIR 869
Cdd:pfam17380 458 RQQQVERLRQQEEER-----KRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIE-----------------EERKR 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 870 KGRDQEIElvihrlEADMTLAKEESERAAESRVKRvrdkyETELSELEQSERKLQeRCSELKGRLGEAEGEKERLQSLVR 949
Cdd:pfam17380 516 KLLEKEME------ERQKAIYEEERRREAEEERRK-----QQEMEERRRIQEQMR-KATEERSRLEAMEREREMMRQIVE 583
|
....*..
gi 294345409 950 QKEKELE 956
Cdd:pfam17380 584 SEKARAE 590
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
555-959 |
2.27e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 555 ELEEKKQAMALLQRALAQQRDLTVRRVKETEKELTRQLRQQKEQYEaTIQRHLSFIDQLIEDKKVLSEKCEAVVAELKHG 634
Cdd:PRK03918 356 ELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKE-EIEEEISKITARIGELKKEIKELKKAIEELKKA 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 635 DQRCRERVAQMQEQHELEIkkLKELMSATEKIRRE-KWINEKTKKIKEITVrglepEIQKLIAKHKqEVRRLRGLHEaEL 713
Cdd:PRK03918 435 KGKCPVCGRELTEEHRKEL--LEEYTAELKRIEKElKEIEEKERKLRKELR-----ELEKVLKKES-ELIKLKELAE-QL 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 714 QQREEQAAQRHL----RQAEELRQHLDREREVLGQQERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERLGQQAAR 789
Cdd:PRK03918 506 KELEEKLKKYNLeeleKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFE 585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 790 QRAELEELRQQLEEssaaltralraefersreeqERRHQMELKALKDQLEAErqawvascakKEEAWLLTRERELKEEIR 869
Cdd:PRK03918 586 SVEELEERLKELEP--------------------FYNEYLELKDAEKELERE----------EKELKKLEEELDKAFEEL 635
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 870 KGRDQEIELVIHRLEADMTLAKEESERAAESRVKRVRDKYETELSELEQSERKLQERCS---ELKGRLGEAEGEKERLQS 946
Cdd:PRK03918 636 AETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKtleKLKEELEEREKAKKELEK 715
|
410
....*....|...
gi 294345409 947 LVRQKEKeLEDLR 959
Cdd:PRK03918 716 LEKALER-VEELR 727
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
585-963 |
2.47e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 2.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 585 EKELTRQLRQQKEQYEATIQRHLSfIDQL---IEDKKVLSEKCEAVVAELKHGDQRCRER------------------VA 643
Cdd:pfam15921 390 EKELSLEKEQNKRLWDRDTGNSIT-IDHLrreLDDRNMEVQRLEALLKAMKSECQGQMERqmaaiqgkneslekvsslTA 468
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 644 QMQEQHELEIKKLKELMSATEKIRR-EKWINEKTKKI--KEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQA 720
Cdd:pfam15921 469 QLESTKEMLRKVVEELTAKKMTLESsERTVSDLTASLqeKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQT 548
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 721 AQRHLRQA--------EELRQHLDREREVLGQQER-------ERAQ-------QRFE---------------QHLEQEQR 763
Cdd:pfam15921 549 ECEALKLQmaekdkviEILRQQIENMTQLVGQHGRtagamqvEKAQlekeindRRLElqefkilkdkkdakiRELEARVS 628
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 764 ALEQQRRRLYN----------EVAEEKERLGQQAARQRAELEELRQQLEessaALTRALRAEFERSREEQERRhQMELKA 833
Cdd:pfam15921 629 DLELEKVKLVNagserlravkDIKQERDQLLNEVKTSRNELNSLSEDYE----VLKRNFRNKSEEMETTTNKL-KMQLKS 703
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 834 LKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLA-------KEESERAAE--SRVKR 904
Cdd:pfam15921 704 AQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNAnkekhflKEEKNKLSQelSTVAT 783
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 294345409 905 VRDKYETELSELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKEKELEDLRAVNT 963
Cdd:pfam15921 784 EKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHT 842
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
554-844 |
3.04e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 3.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 554 LELEEKKQAMALLQRALAQQRDLTVRRVKETEKEL------TRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAV 627
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELsdasrkIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 628 VAELKHGDQRCRERVAQM-QEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIA---------K 697
Cdd:TIGR02169 757 KSELKELEARIEELEEDLhKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLekeylekeiQ 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 698 HKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELRQHLDREREVLGQQERERAQQRfeqHLEQEQRALEQQRRRLYNEVA 777
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERD---ELEAQLRELERKIEELEAQIE 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 778 EEKERLGQQAAR------QRAELEELRQQLEESSA-------------ALTRALRA-----EFERSREEQERRHQMELKA 833
Cdd:TIGR02169 914 KKRKRLSELKAKlealeeELSEIEDPKGEDEEIPEeelsledvqaelqRVEEEIRAlepvnMLAIQEYEEVLKRLDELKE 993
|
330
....*....|.
gi 294345409 834 LKDQLEAERQA 844
Cdd:TIGR02169 994 KRAKLEEERKA 1004
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
551-812 |
4.03e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 4.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 551 RLKLELEEKKQAMALLQRALAQQRDLTVRRVKET----------EKELTRQ---------LRQQKEQYEATIQRHLSFID 611
Cdd:COG3206 102 KLNLDEDPLGEEASREAAIERLRKNLTVEPVKGSnvieisytspDPELAAAvanalaeayLEQNLELRREEARKALEFLE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 612 QLIEDKKVLSEKCEAVVAELKHgdqrcRERVAQMQEQHELEIKKLKELMSATEKIRREkwINEKTKKIKEITVRGLEPEI 691
Cdd:COG3206 182 EQLPELRKELEEAEAALEEFRQ-----KNGLVDLSEEAKLLLQQLSELESQLAEARAE--LAEAEARLAALRAQLGSGPD 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 692 QKLIAKHKQEVRRLRGlHEAELQQREEQAAQRHLRQAEELRQhLDREREVLGQQERERAQQRFEQhLEQEQRALEQQRRR 771
Cdd:COG3206 255 ALPELLQSPVIQQLRA-QLAELEAELAELSARYTPNHPDVIA-LRAQIAALRAQLQQEAQRILAS-LEAELEALQAREAS 331
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 294345409 772 LYNEVAEEKERLgQQAARQRAELEELRQQLEESSAALTRAL 812
Cdd:COG3206 332 LQAQLAQLEARL-AELPELEAELRRLEREVEVARELYESLL 371
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
587-814 |
4.04e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 4.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 587 ELTRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKHGDQRCRERVAQMQEQhELEIKKLKELMSATEKi 666
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-EAELAELEKEIAELRA- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 667 RREKWINEKTKKIKEITVRGLEPEIQKLIAKH--KQEVRRLRGLHE-AELQQREEQAAQRHLRQAEELRQHLDREREVLG 743
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEdfLDAVRRLQYLKYlAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 294345409 744 QQERERAQQRfeqhleQEQRALEQQRRRLYNEVAEEKERLGQQAARQRAELEELRQQLEESSAALTRALRA 814
Cdd:COG4942 178 ALLAELEEER------AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
739-1032 |
4.30e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 4.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 739 REVLGQQERERAQ---QRFEQHLEQEQRALE------QQRRRLYNEVAEEKERLGQQAARQRAELEELRQQLEESSAALT 809
Cdd:PRK03918 152 RQILGLDDYENAYknlGEVIKEIKRRIERLEkfikrtENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 810 ralraefersreeqerrhqmELKALKDQLEAerqawvascAKKEEAWLLTRERELKEEIRKGRDQ--EIELVIHRLEADM 887
Cdd:PRK03918 232 --------------------ELEELKEEIEE---------LEKELESLEGSKRKLEEKIRELEERieELKKEIEELEEKV 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 888 TLAKEESERAAE-SRVKRVRDKYETELSELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKE-------------K 953
Cdd:PRK03918 283 KELKELKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKelekrleeleerhE 362
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 294345409 954 ELEDLRAVNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKVELAELQARQqveldevhRRVKTALARKEAAVNSLRK 1032
Cdd:PRK03918 363 LYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARI--------GELKKEIKELKKAIEELKK 433
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
719-954 |
4.52e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 4.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 719 QAAQRHLRQAEELRQHLDREREVLGQQERERAQQRFE-QHLEQEQRALEQQRRRLYNEVAEEKERLgqqaARQRAELEEL 797
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQlAALERRIAALARRIRALEQELAALEAEL----AELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 798 RQQLEESSAALTRALRAEFERSReeqerrhQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIE 877
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGR-------QPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 294345409 878 LVIHRLEADMTLAKEESERAaesRVKRVRDKYETELSELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKEKE 954
Cdd:COG4942 169 LEAERAELEALLAELEEERA---ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
714-855 |
5.17e-05 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 46.72 E-value: 5.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 714 QQREEQAAQrhlrQAEELRQHLDREREVLGQQERER--AQQRFEQHLEQEQRALEQQRRrlynevAEEKERLGQQAARQR 791
Cdd:PRK09510 79 EQRKKKEQQ----QAEELQQKQAAEQERLKQLEKERlaAQEQKKQAEEAAKQAALKQKQ------AEEAAAKAAAAAKAK 148
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 294345409 792 AELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEA 855
Cdd:PRK09510 149 AEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAA 212
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
565-814 |
1.06e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 46.10 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 565 LLQRALAQQRDLtVRRVKETEKELTRQLRQQKEQYEATIQRhlSFIDQLIEDKK------VLSEKCEAVVAELKHGDQRC 638
Cdd:COG5185 265 LRLEKLGENAES-SKRLNENANNLIKQFENTKEKIAEYTKS--IDIKKATESLEeqlaaaEAEQELEESKRETETGIQNL 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 639 RERVAQMQEQHELEIKKLKELMSATEKIRR-----------EKWINEKTKKIKEI--TVRGLEPEIQKLIAKHKQEVRRL 705
Cdd:COG5185 342 TAEIEQGQESLTENLEAIKEEIENIVGEVElsksseeldsfKDTIESTKESLDEIpqNQRGYAQEILATLEDTLKAADRQ 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 706 RGLHEAELQQ--REEQAAQRHLRQAEELRQHLDREREVLGQQERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERL 783
Cdd:COG5185 422 IEELQRQIEQatSSNEEVSKLLNELISELNKVMREADEESQSRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATL 501
|
250 260 270
....*....|....*....|....*....|.
gi 294345409 784 GQQAARQRAELEELRQQLEESSAALTRALRA 814
Cdd:COG5185 502 EKLRAKLERQLEGVRSKLDQVAESLKDFMRA 532
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
700-1031 |
1.06e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.48 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 700 QEVRRLRG----LHEAELQQREEqAAQRHLRQAEELRQHLDREREVLGQQER------------ERAQQRFEQhLEQEQR 763
Cdd:COG3096 874 QLLNKLLPqanlLADETLADRLE-ELREELDAAQEAQAFIQQHGKALAQLEPlvavlqsdpeqfEQLQADYLQ-AKEQQR 951
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 764 ALEQQRRRLyNEVAEEKERLGQQAARQR----AEL-EELRQQLEESSAALTRALRAefersreeqerrhqmeLKALKDQL 838
Cdd:COG3096 952 RLKQQIFAL-SEVVQRRPHFSYEDAVGLlgenSDLnEKLRARLEQAEEARREAREQ----------------LRQAQAQY 1014
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 839 EAERQAWVAscakkeeawlLTRERELKEEIRKGRDQEIELVIHRLEADMtlakeeSERAAESRvkrvrdkyetelSELEQ 918
Cdd:COG3096 1015 SQYNQVLAS----------LKSSRDAKQQTLQELEQELEELGVQADAEA------EERARIRR------------DELHE 1066
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 919 SERKLQERCSELKGRLGEAEGEKERLQSLVRQKEKELEDLRavnTQMCSERASLAQVVRqefaeqLAA-SQEETQRVKVE 997
Cdd:COG3096 1067 ELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQER---EQVVQAKAGWCAVLR------LARdNDVERRLHRRE 1137
|
330 340 350
....*....|....*....|....*....|....*
gi 294345409 998 LAELQARQQVE-LDEVHRRVKTALARKEAAVNSLR 1031
Cdd:COG3096 1138 LAYLSADELRSmSDKALGALRLAVADNEHLRDALR 1172
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
708-1007 |
1.62e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 708 LHEAELQQREEQAAQRHLRQAEELRQHLDREREV----LGQQERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERL 783
Cdd:pfam12128 227 IRDIQAIAGIMKIRPEFTKLQQEFNTLESAELRLshlhFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDEL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 784 GQQAARQRAELEELRQQLEESSAALTRALRAefersREEQERRHQMELKALKDQLEAErqawvascaKKEEAWLLTRERE 863
Cdd:pfam12128 307 NGELSAADAAVAKDRSELEALEDQHGAFLDA-----DIETAAADQEQLPSWQSELENL---------EERLKALTGKHQD 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 864 LKEE---IRKGRDQEIELVIHRLEADMTLAKEESER--AAESRV-----KRVRDKYETELSELEQSERKLQERCSELKGR 933
Cdd:pfam12128 373 VTAKynrRRSKIKEQNNRDIAGIKDKLAKIREARDRqlAVAEDDlqaleSELREQLEAGKLEFNEEEYRLKSRLGELKLR 452
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 294345409 934 LGEAEGEKERLQSLvRQKEKELEDLRAVNTQMCSERASLAQ---VVRQEFAEQLAASQEETQRVKVELAELQARQQV 1007
Cdd:pfam12128 453 LNQATATPELLLQL-ENFDERIERAREEQEAANAEVERLQSelrQARKRRDQASEALRQASRRLEERQSALDELELQ 528
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
681-805 |
2.28e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 45.20 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 681 EITVR-GLEPEI----QKLIAKHKQEVRRL-RGLHEAELQQREEqaaqrhLRQAEELRQHLDREREVLgQQERERAQQRF 754
Cdd:PRK00409 492 EIAKRlGLPENIieeaKKLIGEDKEKLNELiASLEELERELEQK------AEEAEALLKEAEKLKEEL-EEKKEKLQEEE 564
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 294345409 755 EQHLEQEQRALEQQRRRLYNEVAEEKERL-----GQQAARQRAELEELRQQLEESS 805
Cdd:PRK00409 565 DKLLEEAEKEAQQAIKEAKKEADEIIKELrqlqkGGYASVKAHELIEARKRLNKAN 620
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
744-952 |
2.67e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 744 QQERERAQQRFEQHLEQEQRALEQQRRRLYN--------EVAEEKERLGQQAARQRAELEELRQQLEESSAALTRALRAE 815
Cdd:COG3206 170 REEARKALEFLEEQLPELRKELEEAEAALEEfrqknglvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 816 FERSREEQERRHQMELKALKDQLeaerqawvascakkeeawlLTRERELKEEIRKGRDQEIELVihRLEADMtlakEESE 895
Cdd:COG3206 250 GSGPDALPELLQSPVIQQLRAQL-------------------AELEAELAELSARYTPNHPDVI--ALRAQI----AALR 304
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 294345409 896 RAAESRVKRVRDKYETELSELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKE 952
Cdd:COG3206 305 AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVE 361
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
326-409 |
3.52e-04 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 44.68 E-value: 3.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 326 ARQARQAAIQEQQKRAQKASEAEHrrPKDRPETRAPEQPRPMQEPGCVTHPK-------ANNAGASIYPTGPADPCPPAS 398
Cdd:PTZ00449 564 AKEHKPSKIPTLSKKPEFPKDPKH--PKDPEEPKKPKRPRSAQRPTRPKSPKlpelldiPKSPKRPESPKSPKRPPPPQR 641
|
90
....*....|.
gi 294345409 399 ESSPEQWQSPE 409
Cdd:PTZ00449 642 PSSPERPEGPK 652
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
862-1052 |
4.57e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 4.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 862 RELKEEIRKGRDQeielvIHRLEAdmtlAKEESERAAESRVKRVRDKYETELSELEQSERK---LQERCSELKGRLGEAE 938
Cdd:COG4913 238 ERAHEALEDAREQ-----IELLEP----IRELAERYAAARERLAELEYLRAALRLWFAQRRlelLEAELEELRAELARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 939 GEKERLQSLVRQKEKELEDLRAvntqmcsERASLAQVVRQEFAEQLAASQEETQRVKVELAELQARQQV-------ELDE 1011
Cdd:COG4913 309 AELERLEARLDALREELDELEA-------QIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAAlglplpaSAEE 381
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 294345409 1012 VHRRVKTALARKEAAVNSLRKQHEAAVKRADHLEELLEQHK 1052
Cdd:COG4913 382 FAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELR 422
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
721-1050 |
4.75e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 4.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 721 AQRHLRQAEELRQHLDREREVLG-QQERERAQQRFEQHLEQEQRALEQQRrrlynEVAEEKERLGQQAARQ-------RA 792
Cdd:COG3096 280 RRELSERALELRRELFGARRQLAeEQYRLVEMARELEELSARESDLEQDY-----QAASDHLNLVQTALRQqekieryQE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 793 ELEELRQQLEESSAAltRALRAEFERSREEQERRHQMELKALKDQLE--------------AERQAWVAscakKEEAWLL 858
Cdd:COG3096 355 DLEELTERLEEQEEV--VEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyqqaldvqqtraiQYQQAVQA----LEKARAL 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 859 TREREL-----KEEIRKGRDQEIELVIHRLEADMTL-----AKEESERAAESrVKRVRDkyETELSELEQSERKLQERCS 928
Cdd:COG3096 429 CGLPDLtpenaEDYLAAFRAKEQQATEEVLELEQKLsvadaARRQFEKAYEL-VCKIAG--EVERSQAWQTARELLRRYR 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 929 ELKGRLGeaegekeRLQSLvRQKEKELEDLRAvntqmcseraslaqvvRQEFAEQLAASQEETQRVKV----ELAELQAR 1004
Cdd:COG3096 506 SQQALAQ-------RLQQL-RAQLAELEQRLR----------------QQQNAERLLEEFCQRIGQQLdaaeELEELLAE 561
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 294345409 1005 QQVELDEVHRRVKTALARK----------EAAVNSLRKQHEAAVKRADHLEELLEQ 1050
Cdd:COG3096 562 LEAQLEELEEQAAEAVEQRselrqqleqlRARIKELAARAPAWLAAQDALERLREQ 617
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
575-958 |
4.81e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 4.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 575 DLTVRRVKETEKELTRQLRQQKEQYEaTIQRHLSFIDQLIEDkkvLSEKCEAVVAELKHGDQRCRERVAQMQEQHElEIK 654
Cdd:TIGR04523 299 DLNNQKEQDWNKELKSELKNQEKKLE-EIQNQISQNNKIISQ---LNEQISQLKKELTNSESENSEKQRELEEKQN-EIE 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 655 KLKE-----------LMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLiAKHKQEVRRLRGLHEAELQQREEQAAQR 723
Cdd:TIGR04523 374 KLKKenqsykqeiknLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELL-EKEIERLKETIIKNNSEIKDLTNQDSVK 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 724 hlrqaEELRQHLDREREVLGQQ--ERERAQQRFEQHLEQEQRALEQQRRRLyNEVAEEKERLGQQAARQRAELEELRQQL 801
Cdd:TIGR04523 453 -----ELIIKNLDNTRESLETQlkVLSRSINKIKQNLEQKQKELKSKEKEL-KKLNEEKKELEEKVKDLTKKISSLKEKI 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 802 EESSAALTRAlraefersreeqerrhQMELKALKDQLEAerqawvascaKKEEawlLTRErELKEEIRkGRDQEIElvih 881
Cdd:TIGR04523 527 EKLESEKKEK----------------ESKISDLEDELNK----------DDFE---LKKE-NLEKEID-EKNKEIE---- 571
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 294345409 882 rleaDMTLAKEESERAAESRVKRVrDKYETELSELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKEKELEDL 958
Cdd:TIGR04523 572 ----ELKQTQKSLKKKQEEKQELI-DQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKL 643
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
705-899 |
5.10e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 5.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 705 LRGLHEAELQQREEQAAQRhLRQAEELRQHLDREREVLGQQERERAQQRFEQHLEQEQRALEQQRRRLynevaEEKErlg 784
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKRI-LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRL-----LQKE--- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 785 QQAARQRAELEELRQQLEESSAALTRALRAEFERsreeqerrhQMELKALKDQLEAERQawVASCAKKEEAwlltRER-- 862
Cdd:PRK12704 96 ENLDRKLELLEKREEELEKKEKELEQKQQELEKK---------EEELEELIEEQLQELE--RISGLTAEEA----KEIll 160
|
170 180 190
....*....|....*....|....*....|....*...
gi 294345409 863 -ELKEEIRkgrdQEIELVIHRLEADmtlAKEESERAAE 899
Cdd:PRK12704 161 eKVEEEAR----HEAAVLIKEIEEE---AKEEADKKAK 191
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
610-1052 |
5.37e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 5.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 610 IDQLIEDKKVLSEKCEAVVAElkhgdQRCRERVAQMQEQHElEIKKLKELMSATEKIRR--EKWINEKTKKIKEITVRGL 687
Cdd:COG4913 227 ADALVEHFDDLERAHEALEDA-----REQIELLEPIRELAE-RYAAARERLAELEYLRAalRLWFAQRRLELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 688 EPEIQKLIAKhKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELRQHLDREREVLGQQERERAQ-----QRFEQHLEQEQ 762
Cdd:COG4913 301 RAELARLEAE-LERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARleallAALGLPLPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 763 RALEQQRRRLY---NEVAEEKERLGQQAARQRAELEELRQQLEEssaaLTRALRAEFERSREEQERRHQMeLKALKDQL- 838
Cdd:COG4913 380 EEFAALRAEAAallEALEEELEALEEALAEAEAALRDLRRELRE----LEAEIASLERRKSNIPARLLAL-RDALAEALg 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 839 EAERQAWVAsC-----AKKEEAW--------------LLTRERELKEEIRK--GRDQEIELVIHRLEADMTLAKEES--- 894
Cdd:COG4913 455 LDEAELPFV-GelievRPEEERWrgaiervlggfaltLLVPPEHYAAALRWvnRLHLRGRLVYERVRTGLPDPERPRldp 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 895 --------------ERAAESRVKRVRD--KYETElSELEQSERKL-------------------------------QERC 927
Cdd:COG4913 534 dslagkldfkphpfRAWLEAELGRRFDyvCVDSP-EELRRHPRAItragqvkgngtrhekddrrrirsryvlgfdnRAKL 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 928 SELKGRLGEAEGEKERLQSLVRQKEKELEDLRAvntqmcsERASLAQVVRQEFAEQ-LAASQEETQRVKVELAELQARQQ 1006
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQE-------RREALQRLAEYSWDEIdVASAEREIAELEAELERLDASSD 685
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 294345409 1007 vELDEVHRRVKTAlarkEAAVNSLRKQHEAAVKRADHLEELLEQHK 1052
Cdd:COG4913 686 -DLAALEEQLEEL----EAELEELEEELDELKGEIGRLEKELEQAE 726
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
890-1046 |
5.77e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 5.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 890 AKEESERAAESRVKRVRDKYETELSELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKEKELEDlRAVNTQMCSER 969
Cdd:COG4942 41 KELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE-LLRALYRLGRQ 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 970 ASLAQVV---------------------RQEFAEQLAASQEETQRVKVELAELQARQQVELDEV---HRRVKTALARKEA 1025
Cdd:COG4942 120 PPLALLLspedfldavrrlqylkylapaRREQAEELRADLAELAALRAELEAERAELEALLAELeeeRAALEALKAERQK 199
|
170 180
....*....|....*....|.
gi 294345409 1026 AVNSLRKQHEAAVKRADHLEE 1046
Cdd:COG4942 200 LLARLEKELAELAAELAELQQ 220
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
717-1009 |
5.97e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 5.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 717 EEQAAQRHLRQAEEL-RQHLDREREVLGQQER-ERAQQRFEqhlEQEQRALEQQRRRLynEVAEEKERLGQQAARQRAEL 794
Cdd:COG3096 317 ELSARESDLEQDYQAaSDHLNLVQTALRQQEKiERYQEDLE---ELTERLEEQEEVVE--EAAEQLAEAEARLEAAEEEV 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 795 EELRQQLEESSAAL----TRAL----------RAEFERSR----EEQERRHQMELKALKDQ-----LEAERQAWVASCAK 851
Cdd:COG3096 392 DSLKSQLADYQQALdvqqTRAIqyqqavqaleKARALCGLpdltPENAEDYLAAFRAKEQQateevLELEQKLSVADAAR 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 852 K--EEAWLLTR------ERE-----LKEEIRKGRDQ---------------EIELVIHRLEADMTLAKEESERAAESRvk 903
Cdd:COG3096 472 RqfEKAYELVCkiagevERSqawqtARELLRRYRSQqalaqrlqqlraqlaELEQRLRQQQNAERLLEEFCQRIGQQL-- 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 904 RVRDKYETELSELEQserkLQERCSELKGRLGEAEGEKERLQSLVRQKEKELED-----------LRAVNTQMCSERASL 972
Cdd:COG3096 550 DAAEELEELLAELEA----QLEELEEQAAEAVEQRSELRQQLEQLRARIKELAArapawlaaqdaLERLREQSGEALADS 625
|
330 340 350
....*....|....*....|....*....|....*..
gi 294345409 973 AQVvrQEFAEQLAASQEETQRVKVELAelQARQQVEL 1009
Cdd:COG3096 626 QEV--TAAMQQLLEREREATVERDELA--ARKQALES 658
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
911-1023 |
6.43e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.03 E-value: 6.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 911 TELSELEQSERK-LQERCSELKGRLGEAEGEKERLQSLVRQKEKELEDLRAVNTQMCSERASLAQVVRQEFA------EQ 983
Cdd:PRK09039 66 ADLLSLERQGNQdLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAqvellnQQ 145
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 294345409 984 LAASQEETQRVKVELAELQAR---QQVELDEVHRRVKTALARK 1023
Cdd:PRK09039 146 IAALRRQLAALEAALDASEKRdreSQAKIADLGRRLNVALAQR 188
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
701-856 |
7.69e-04 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 43.32 E-value: 7.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 701 EVRRLRGLHEAELQQREEQAAQRHLRQAEELRQHLDREREVLGQQERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEK 780
Cdd:COG2268 196 EIIRDARIAEAEAERETEIAIAQANREAEEAELEQEREIETARIAEAEAELAKKKAEERREAETARAEAEAAYEIAEANA 275
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 294345409 781 ERLGQQA---ARQRAELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWvascAKKEEAW 856
Cdd:COG2268 276 EREVQRQleiAEREREIELQEKEAEREEAELEADVRKPAEAEKQAAEAEAEAEAEAIRAKGLAEAEGK----RALAEAW 350
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
744-974 |
9.31e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 9.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 744 QQERERAQQRFEQHLEQEQRALEQQRRRLyNEVAEEKERLGQQAARQRAELEELRQQLEESSAALTRALRAEFERSREEQ 823
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEE-KALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 824 ERRHQMElKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEAdmtLAKEESERAAEsrvk 903
Cdd:COG4942 101 AQKEELA-ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE---LAALRAELEAE---- 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 294345409 904 rvRDKYETELSELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKEKELEDLRAVNTQMCSERASLAQ 974
Cdd:COG4942 173 --RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
709-869 |
1.06e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 709 HEAELQQREEQAAQRHL-RQAEELRQHL-DREREVLGQQERERAQQRFEQH----------LEQEQRALEQQRRRLYNEV 776
Cdd:COG3096 494 WQTARELLRRYRSQQALaQRLQQLRAQLaELEQRLRQQQNAERLLEEFCQRigqqldaaeeLEELLAELEAQLEELEEQA 573
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 777 AEEkerlGQQAARQRAELEELRQQLEESSA------ALTRALRAEFERSREEQERRHQMeLKALKDQLEAERQawvascA 850
Cdd:COG3096 574 AEA----VEQRSELRQQLEQLRARIKELAArapawlAAQDALERLREQSGEALADSQEV-TAAMQQLLERERE------A 642
|
170
....*....|....*....
gi 294345409 851 KKEEAWLLTRERELKEEIR 869
Cdd:COG3096 643 TVERDELAARKQALESQIE 661
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
699-812 |
1.70e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 42.63 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 699 KQEVRRLRglHEAELQQREEQAAQRHLRQAEELRQHLDRErevlgQQERERAQQRFEQHLEQEQRALEQQRRrlynEVAE 778
Cdd:PRK11448 148 QQEVLTLK--QQLELQAREKAQSQALAEAQQQELVALEGL-----AAELEEKQQELEAQLEQLQEKAAETSQ----ERKQ 216
|
90 100 110
....*....|....*....|....*....|....
gi 294345409 779 EKERLGQQAArQRAELEElrqqleessaALTRAL 812
Cdd:PRK11448 217 KRKEITDQAA-KRLELSE----------EETRIL 239
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
569-991 |
1.73e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 569 ALAQQRDLTVRRVKETEKELtRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAELkhgdQRCRERVAQMQEQ 648
Cdd:PRK02224 311 AVEARREELEDRDEELRDRL-EECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESEL----EEAREAVEDRREE 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 649 HELEIKKLKELMSATEKI---------RREKWINEKTKkikeitVRGLEPEIQKLIAKHKQEVRRLRGLHEAEL-----Q 714
Cdd:PRK02224 386 IEELEEEIEELRERFGDApvdlgnaedFLEELREERDE------LREREAELEATLRTARERVEEAEALLEAGKcpecgQ 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 715 QREEQAAQRHLRQAEELRQHLDREREVLGQQ--ERERAQQRFEQHLEQEQRA--LEQQRRRLYNEVAEEKERLGQ---QA 787
Cdd:PRK02224 460 PVEGSPHVETIEEDRERVEELEAELEDLEEEveEVEERLERAEDLVEAEDRIerLEERREDLEELIAERRETIEEkreRA 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 788 ARQRAELEELRQQLEESSAALTRA-LRAEFERSREEQERRHQMELKALKDQLE--AERQAWVASCAKKEE------AWLL 858
Cdd:PRK02224 540 EELRERAAELEAEAEEKREAAAEAeEEAEEAREEVAELNSKLAELKERIESLEriRTLLAAIADAEDEIErlrekrEALA 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 859 TRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAEsrvkrVRDKYETELSELEQSERKLQERCSELKGRLGEAE 938
Cdd:PRK02224 620 ELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEE-----YLEQVEEKLDELREERDDLQAEIGAVENELEELE 694
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 294345409 939 GEKERLQSLVRQKEKeLEDLRAVNTQMCSERASLAQVVRQEFAEQLAASQEET 991
Cdd:PRK02224 695 ELRERREALENRVEA-LEALYDEAEELESMYGDLRAELRQRNVETLERMLNET 746
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
916-1036 |
2.03e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 916 LEQSERKLQERCSELKGRLGEAEGEKERLQslvrQKEKELEDlravntqmcsERASLAQVVRQEFAEQLAASQEETQRVK 995
Cdd:PRK00409 525 LEELERELEQKAEEAEALLKEAEKLKEELE----EKKEKLQE----------EEDKLLEEAEKEAQQAIKEAKKEADEII 590
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 294345409 996 VELAELQARQQV-----ELDEVHRRVKTALARKEAAVNSLRKQHEA 1036
Cdd:PRK00409 591 KELRQLQKGGYAsvkahELIEARKRLNKANEKKEKKKKKQKEKQEE 636
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
669-1006 |
2.03e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 669 EKWINEKTKKIKEITVrgLEPEIQKLIAK--HKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELRQHLDREREVLgQQE 746
Cdd:TIGR00606 690 EAELQEFISDLQSKLR--LAPDKLKSTESelKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRL-KND 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 747 RERAQQRFEQHLEQEQRALEQQR-----RRLYNEVAEEKERLGQQAARQRA-----ELEELRQQLEESSAALTRALRAEF 816
Cdd:TIGR00606 767 IEEQETLLGTIMPEEESAKVCLTdvtimERFQMELKDVERKIAQQAAKLQGsdldrTVQQVNQEKQEKQHELDTVVSKIE 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 817 ERSREEQERRHQME-LKALKDQLEAERQAWVASCAKKEE-----AWLLTRERELKEEIRKGRDQEIELV-----IHRLEA 885
Cdd:TIGR00606 847 LNRKLIQDQQEQIQhLKSKTNELKSEKLQIGTNLQRRQQfeeqlVELSTEVQSLIREIKDAKEQDSPLEtflekDQQEKE 926
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 886 DMTLAKEESERAAESRVKRVRDKYETELSELEQSERKLQERCSE-LKGRLGEAEGEKERLQSLVRQKEKELEDLR----A 960
Cdd:TIGR00606 927 ELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDyLKQKETELNTVNAQLEECEKHQEKINEDMRlmrqD 1006
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 294345409 961 VNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKVELAELQARQQ 1006
Cdd:TIGR00606 1007 IDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQM 1052
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
518-848 |
2.12e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 518 DEMEKSGQERPAPWRESLVLEAGSGSEGSTSVMRLKLELEEKKQAMALLQR-ALAQQRDLTVRRVKETEKELTRqLRQQK 596
Cdd:pfam17380 291 EKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERmAMERERELERIRQEERKRELER-IRQEE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 597 EQYEATIQRHLsfidqliedkkvlsekcEAVVAELKHGDQRCRERVAQMQEQHELE---IKKLKELMSATEKIRREKwin 673
Cdd:pfam17380 370 IAMEISRMREL-----------------ERLQMERQQKNERVRQELEAARKVKILEeerQRKIQQQKVEMEQIRAEQ--- 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 674 ektKKIKEITVRGLEPEiqkliakHKQEVRRLRglheAELQQREEQAAQRHLRQAEELRQHLDREREVLGQQERERAQQR 753
Cdd:pfam17380 430 ---EEARQREVRRLEEE-------RAREMERVR----LEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRK 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 754 -FEQHLEQEQRAL---EQQRRRLYNEVAEEKERLGQQAARQRAELEELRQQ-LEESSAALTRALRAEFERSREEQERRHQ 828
Cdd:pfam17380 496 iLEKELEERKQAMieeERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQeMEERRRIQEQMRKATEERSRLEAMERER 575
|
330 340
....*....|....*....|
gi 294345409 829 MELKALKDQLEAERQAWVAS 848
Cdd:pfam17380 576 EMMRQIVESEKARAEYEATT 595
|
|
| Troponin |
pfam00992 |
Troponin; Troponin (Tn) contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and ... |
887-958 |
2.21e-03 |
|
Troponin; Troponin (Tn) contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). this Pfam contains members of the TnT subunit. Troponin is a complex of three proteins, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). The troponin complex regulates Ca++ induced muscle contraction. This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin.
Pssm-ID: 460018 [Multi-domain] Cd Length: 132 Bit Score: 39.47 E-value: 2.21e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 294345409 887 MTLAKEESERAAESRVKRVRDKYETeLSELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKEKELEDL 958
Cdd:pfam00992 13 AEELEFEQEKKEEEKLRYLAERIPP-LRLRGLSAEQLQELCEELHERIDKLEEERYDIEEKVAKKDKEINDL 83
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
690-843 |
2.29e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.96 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 690 EIQKLIAKHKQEVRRLR-GLHEAELQQREEQAAQRHLRQAEELRQHLDREREV---LGQqereraqqrFEQHLEQEQRAL 765
Cdd:PRK10929 83 ELRQQLNNERDEPRSVPpNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREIsdsLSQ---------LPQQQTEARRQL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 766 EQQRRRLY-----NEVAEEKERLGQQA--ARQRAELEELrqQLEESSA----ALTRaLRAEFERSREEQErrhQMELKAL 834
Cdd:PRK10929 154 NEIERRLQtlgtpNTPLAQAQLTALQAesAALKALVDEL--ELAQLSAnnrqELAR-LRSELAKKRSQQL---DAYLQAL 227
|
....*....
gi 294345409 835 KDQLEAERQ 843
Cdd:PRK10929 228 RNQLNSQRQ 236
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
839-986 |
2.47e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 839 EAERQAWvascAKKEEAwlltrERELKEEIRKGRDQ-EIELVIHRLEadmtLAKEEseraaesrvKRVRDKYET---ELS 914
Cdd:PRK12704 46 EAKKEAE----AIKKEA-----LLEAKEEIHKLRNEfEKELRERRNE----LQKLE---------KRLLQKEENldrKLE 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 294345409 915 ELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKEKELEDLravnTQMCSE--RASLAQVVRQEFAEQLAA 986
Cdd:PRK12704 104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI----SGLTAEeaKEILLEKVEEEARHEAAV 173
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
578-807 |
3.14e-03 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 41.39 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 578 VRRVKETEKEltrqlrQQKEQYEATIQRHLSFIDQLIEDKKVLSEKceAVVAELKHGDQRCRERVAQMQEQHELEIKKLK 657
Cdd:pfam02029 149 VRQAEEEGEE------EEDKSEEAEEVPTENFAKEEVKDEKIKKEK--KVKYESKVFLDQKRGHPEVKSQNGEEEVTKLK 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 658 ELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRglheaelqQREEQAAQrhlrQAEELRQHLDR 737
Cdd:pfam02029 221 VTTKRRQGGLSQSQEREEEAEVFLEAEQKLEELRRRRQEKESEEFEKLR--------QKQQEAEL----ELEELKKKREE 288
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 738 EREVLGQQERERAQQRFEQHLEQEqraleqqrrrlynevaEEKERLGQQAARQRAELEELRQQLEESSAA 807
Cdd:pfam02029 289 RRKLLEEEEQRRKQEEAERKLREE----------------EEKRRMKEEIERRRAEAAEKRQKLPEDSSS 342
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
866-1005 |
3.30e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 866 EEIRKG--RDQEIELVIHRLEADMTLAKEESERAAESRVKRVRDKYETELSELEQSERKLQERCSELKGRLGEAEGEKER 943
Cdd:COG2433 366 DEVKARviRGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIER 445
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 294345409 944 LQ---SLVRQKEKELEDLRAVNTQMCSERASLAQVVRQEfAEQLAASQEETQRVKvELAELQARQ 1005
Cdd:COG2433 446 LErelSEARSEERREIRKDREISRLDREIERLERELEEE-RERIEELKRKLERLK-ELWKLEHSG 508
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
896-1050 |
3.36e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 3.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 896 RAAESRVKRVRDKYEteLSELEQSERKLQERCSELKGRLGEAEGEKERLQSLVRQKEKELEDLRAV------NTQMCSER 969
Cdd:COG3206 192 EEAEAALEEFRQKNG--LVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDAlpellqSPVIQQLR 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 970 ASLAQVVRQ--EFAEQLAASQEETQRVKVELAELQARQQVELDEVHRRVKTALARKEAAVNSLRKQHEAAVKRADHLEEL 1047
Cdd:COG3206 270 AQLAELEAElaELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPEL 349
|
...
gi 294345409 1048 LEQ 1050
Cdd:COG3206 350 EAE 352
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
629-808 |
4.75e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 4.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 629 AELKHGDQRCRERVAQMQEQHELEIKKLKELMSATEKIRREkwINEKTKKIKEItvrglepeiQKLIAKHKQEVRRLRGL 708
Cdd:COG1579 20 DRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKE--IKRLELEIEEV---------EARIKKYEEQLGNVRNN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 709 HEAELQQREEQAAQRHLRQAEelrqhlDREREVLGQQEreraqqrfeqHLEQEQRALEQQRRRLYNEVAEEKERLGQQAA 788
Cdd:COG1579 89 KEYEALQKEIESLKRRISDLE------DEILELMERIE----------ELEEELAELEAELAELEAELEEKKAELDEELA 152
|
170 180
....*....|....*....|
gi 294345409 789 RQRAELEELRQQLEESSAAL 808
Cdd:COG1579 153 ELEAELEELEAEREELAAKI 172
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
889-1033 |
4.85e-03 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 40.80 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 889 LAKEESERaaesRVKRVRDKYE---TELSELEQSERKLQERCSELKGRLGEAEGEKE---------------RLQSLVRQ 950
Cdd:pfam10168 554 LAREEIQK----RVKLLKLQKEqqlQELQSLEEERKSLSERAEKLAEKYEEIKDKQEklmrrckkvlqrlnsQLPVLSDA 629
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 951 KEKELEDLRAVNTQMCSERASLAQV-VRQEFAE-QLAASQEETQRVKVELAELQARQQVEL-----DEVHRRVKTalark 1023
Cdd:pfam10168 630 EREMKKELETINEQLKHLANAIKQAkKKMNYQRyQIAKSQSIRKKSSLSLSEKQRKTIKEIlkqlgSEIDELIKQ----- 704
|
170
....*....|
gi 294345409 1024 eaaVNSLRKQ 1033
Cdd:pfam10168 705 ---VKDINKH 711
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
552-1049 |
6.12e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 6.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 552 LKLELEEKKQAMALL--QRALAQQRDLTVRRVKETEKELTRQLRQQKEQYeatiqrhlsfiDQLIEDKKVLSEKCEAVVA 629
Cdd:TIGR04523 178 LEKEKLNIQKNIDKIknKLLKLELLLSNLKKKIQKNKSLESQISELKKQN-----------NQLKDNIEKKQQEINEKTT 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 630 ELkhgdQRCRERVAQMQEQHELEIKKLKELMSATEKIrrEKWINEKTKKIKEItvrglEPEIQKLIAKHKQEVrrLRGLH 709
Cdd:TIGR04523 247 EI----SNTQTQLNQLKDEQNKIKKQLSEKQKELEQN--NKKIKELEKQLNQL-----KSEISDLNNQKEQDW--NKELK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 710 EaELQQREEQAaqrhlrqaEELRQHLDREREVLGQQERERAQqrfeqhLEQEQRALEQQRRRLYNEVaEEKERLGQQAAR 789
Cdd:TIGR04523 314 S-ELKNQEKKL--------EEIQNQISQNNKIISQLNEQISQ------LKKELTNSESENSEKQREL-EEKQNEIEKLKK 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 790 QRAELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKalKDQLEAERQAWVASCAK-KEEAWLLTRERELKEEI 868
Cdd:TIGR04523 378 ENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQE--KELLEKEIERLKETIIKnNSEIKDLTNQDSVKELI 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 869 RKGRDQEIELVIHRLEAdMTLAKEESERAAESRVKRVRDKyETELSELEQSERKLQERCSELKGRLGEAEGEKERLQSLV 948
Cdd:TIGR04523 456 IKNLDNTRESLETQLKV-LSRSINKIKQNLEQKQKELKSK-EKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEK 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 949 RQKEKELEDLRavntqmcSERASLAQVV-RQEFAEQLAASQEETQRVKVELAELQARQQvELDEVhrrvktaLARKEAAV 1027
Cdd:TIGR04523 534 KEKESKISDLE-------DELNKDDFELkKENLEKEIDEKNKEIEELKQTQKSLKKKQE-EKQEL-------IDQKEKEK 598
|
490 500
....*....|....*....|..
gi 294345409 1028 NSLRKQHEAAVKRADHLEELLE 1049
Cdd:TIGR04523 599 KDLIKEIEEKEKKISSLEKELE 620
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
561-789 |
7.09e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 7.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 561 QAMALLQRALAqqrDLTVRRVKETEKELTRQLRQQKEQYEAT--IQRHLSFIDQLIED----KKVLSEKCEAVVAELKHG 634
Cdd:PRK04863 477 QAYQLVRKIAG---EVSRSEAWDVARELLRRLREQRHLAEQLqqLRMRLSELEQRLRQqqraERLLAEFCKRLGKNLDDE 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 635 DQrcrerVAQMQEQHELEIKKLKELMSATEKIRrekwinektkkikeITVRGLEPEIQKLIAKHKQEVRRLRGLHEAeLQ 714
Cdd:PRK04863 554 DE-----LEQLQEELEARLESLSESVSEARERR--------------MALRQQLEQLQARIQRLAARAPAWLAAQDA-LA 613
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 294345409 715 QREEQ--AAQRHLRQAEELRQHLdrerevlgqQERERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERLGQQAAR 789
Cdd:PRK04863 614 RLREQsgEEFEDSQDVTEYMQQL---------LERERELTVERDELAARKQALDEEIERLSQPGGSEDPRLNALAER 681
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
587-1030 |
7.11e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.42 E-value: 7.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 587 ELTRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKHGDQRCRERVAQMQEQHElEIKKLKELMSATEKI 666
Cdd:TIGR00606 189 ETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKN-RLKEIEHNLSKIMKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 667 RREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHlrqaeelrqhldREREVLGQQE 746
Cdd:TIGR00606 268 DNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQ------------RELEKLNKER 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 747 RERAQQRFEQHLEQEQRALeqqrrrlynevaeEKERLGQQAARQRAELEELRQQLE----ESSAALTRALRAEFERSREE 822
Cdd:TIGR00606 336 RLLNQEKTELLVEQGRLQL-------------QADRHQEHIRARDSLIQSLATRLEldgfERGPFSERQIKNFHTLVIER 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 823 QERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLE-----ADMTLAKEESERA 897
Cdd:TIGR00606 403 QEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQqlegsSDRILELDQELRK 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 898 AESRV-----------KRVRDKY-ETELSELEQSERKLQERCSELKgrlgEAEGEKERLQSLVRQKEKELEDLRAVNTQM 965
Cdd:TIGR00606 483 AERELskaeknsltetLKKEVKSlQNEKADLDRKLRKLDQEMEQLN----HHTTTRTQMEMLTKDKMDKDEQIRKIKSRH 558
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 294345409 966 CSERASLAQVV--RQEFAEQLAASQEETQRVKVELAELQARQQvELDEVHRRVKTALARKEAAVNSL 1030
Cdd:TIGR00606 559 SDELTSLLGYFpnKKQLEDWLHSKSKEINQTRDRLAKLNKELA-SLEQNKNHINNELESKEEQLSSY 624
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
555-803 |
7.98e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 7.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 555 ELEEKKQAMALLQRALAQQRdltvrrvkETEKELTRQLRQQKEQYEAtIQRHLSFIDQLIEDkkVLSEKCEAVVAELK-- 632
Cdd:PRK04863 838 ELRQLNRRRVELERALADHE--------SQEQQQRSQLEQAKEGLSA-LNRLLPRLNLLADE--TLADRVEEIREQLDea 906
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 633 HGDQRCRERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIA-KHKQEVRRLRGLHEA 711
Cdd:PRK04863 907 EEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHfSYEDAAEMLAKNSDL 986
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 712 --ELQQREEQAAQRHLRQAEELRQHLDRERE---VLG---------QQERERAQQRFE----QHLEQEQRALEQQRRRLY 773
Cdd:PRK04863 987 neKLRQRLEQAEQERTRAREQLRQAQAQLAQynqVLAslkssydakRQMLQELKQELQdlgvPADSGAEERARARRDELH 1066
|
250 260 270
....*....|....*....|....*....|...
gi 294345409 774 NEVAEEKER---LGQQAARQRAELEELRQQLEE 803
Cdd:PRK04863 1067 ARLSANRSRrnqLEKQLTFCEAEMDNLTKKLRK 1099
|
|
| PHA03252 |
PHA03252 |
DNA packaging tegument protein UL25; Provisional |
877-938 |
8.42e-03 |
|
DNA packaging tegument protein UL25; Provisional
Pssm-ID: 223024 Cd Length: 589 Bit Score: 40.08 E-value: 8.42e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 294345409 877 ELVIHRLEADMTLA-KEESERAAESRVKRVRDKyeTELSELEqseRKLQERCSELKGRLGEAE 938
Cdd:PHA03252 28 EEDLRRLRDDSALRlRRYREDLLRDRLLRRRLG--EELDDLQ---KRLQTECEDLRSRVSEAE 85
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
719-898 |
9.50e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 39.69 E-value: 9.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 719 QAAQRHLRQAEELRQHLDREREVLgqqeRERAQQRFEQHLEQEQRALEQQRRRLYNEVAEEKERLGQQAARQRAELEELr 798
Cdd:PRK12705 26 KKRQRLAKEAERILQEAQKEAEEK----LEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKL- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294345409 799 QQLEESSAALTRALRAEFErsreeqerrhqmELKALKDQLEAERqawvascakkEEAWLLTRErELKEEIRKGRDQEIEL 878
Cdd:PRK12705 101 DNLENQLEEREKALSAREL------------ELEELEKQLDNEL----------YRVAGLTPE-QARKLLLKLLDAELEE 157
|
170 180
....*....|....*....|.
gi 294345409 879 -VIHRLEADMTLAKEESERAA 898
Cdd:PRK12705 158 eKAQRVKKIEEEADLEAERKA 178
|
|
| |
