|
Name |
Accession |
Description |
Interval |
E-value |
| Fungal_TACC |
pfam12709 |
Fungal Transforming acidic coiled-coil (TACC) proteins; TACC proteins are present in different ... |
742-818 |
5.84e-28 |
|
Fungal Transforming acidic coiled-coil (TACC) proteins; TACC proteins are present in different organizms, ranging from yeasts to mammals. Schizosaccharomyces pombe has one TACC protein, known as Alp7 or Mia1p. Alp7/TACC consists of two domains: the N-terminal half that contains the nuclear localization signal (NLS) and has no homology to the other TACC members, and the C-terminal half, which consists of the conserved coiled-coil TACC domain. Alp7/TACC forms a complex with Alp14/TOG and localizes to microtubules, SPBs and kinetochores. This complex is necessary for mitotic and meiotic spindle assembly and proper chromosome segregation. The homolog from S. cerevisiae, Slk19, also has a role in spindle assembly and stability, and it is required for proper chromosome segregation.
Pssm-ID: 403801 [Multi-domain] Cd Length: 77 Bit Score: 107.37 E-value: 5.84e-28
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 398365697 742 DTNKRLKLLAEDLYIQYSSKHEQKVKLLKKGYENKYQNKFDQLNLENKTLSEEIEQLNKQLSSEREEKQELLKLLEN 818
Cdd:pfam12709 1 ETNKRLQLLAEDLYIQYSSKHEQKVKLLKKGYESKYQKKLDKLSLENKGLRQEIEQLKKQLETERKEKQELLKLLDE 77
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
356-699 |
5.14e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.63 E-value: 5.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 356 NEKLDKLNTERESDIAKVEKFKKRIKELNTEIKVLnsnqkilQEKFDASITEVNHIKGEHENTVNTLQQNEKILNDKNVE 435
Cdd:TIGR02169 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDA-------SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 436 LENMKAELKGNNDKLSEYETTLNDLNSRIVQLNDKIESTDIvlKSKENELDNLKLSLKE----TLSISKDFNDSDLIGQI 511
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI--PEIQAELSKLEEEVSRiearLREIEQKLNRLTLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 512 NEliSTKNNLQQKMDDLNNLNDDNLKVVQD---KLIKNEETLKLKEAEIDSLNSEMDELKKQITSKDDEFKMWQSKYETV 588
Cdd:TIGR02169 831 LE--KEIQELQEQRIDLKEQIKSIEKEIENlngKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 589 EDEAKIRNAEVTELNGDIEDLKESKLHLEETITELENKVhklENECELEKQKFEKTSLELESLQLKNSNIQA-----EHI 663
Cdd:TIGR02169 909 EAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIP---EEELSLEDVQAELQRVEEEIRALEPVNMLAiqeyeEVL 985
|
330 340 350
....*....|....*....|....*....|....*..
gi 398365697 664 KELENLHENLISLQNELKISSDRITTL-TKENEVLME 699
Cdd:TIGR02169 986 KRLDELKEKRAKLEEERKAILERIEEYeKKKREVFME 1022
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
537-821 |
4.37e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 4.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 537 KVVQDKLIKNEETLKLKEAEIDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDEAKIRNAEVTELNGDIEDLKESKLHL 616
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 617 EETITELENKVHKLENECELEKQKFEKTSLELESLQLKNSNIQAEhikeLENLHENLISLQNELKISSDRITTLTKENEV 696
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE----LTLLNEEAANLRERLESLERRIAATERRLED 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 697 LMEQNNNNNNSVTLSNDQKDRDDEKIKSLGKQVQDWKEKYEAKEKDTNKRLKLLAE-------------DLYIQYSSKHE 763
Cdd:TIGR02168 843 LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEElseelreleskrsELRRELEELRE 922
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 764 Q--KVKLLKKGYENKYQNKFDQLNLENKTLSEEIEQLNKQLSSEREEKQELLKLLENEKK 821
Cdd:TIGR02168 923 KlaQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
358-681 |
4.44e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 4.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 358 KLDKLNTERESDIAKVEKFKKRIKELNTEIKVLNSNQKILQEKFDASITEVNHIKGEHENTVNTLQQNEKILNDKNVELE 437
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 438 NMKAELKGNNDKLSEYETTLNDLNSRIVQLNDKIESTDIVLKSKENELDNLKLSLKETlsiskdfndsdligqiNELIST 517
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL----------------NEEAAN 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 518 KNNLQQKMDDLNNLNDDNLKVVQDKLIKNEETLKLKEAEIDSLNSEMDELKKQITSKDDEFKmwqskyetvedeakirna 597
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA------------------ 883
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 598 evtELNGDIEDLKESKLHLEETITELENKVHKLENECELEKQKFEKTSLELESLQLKNSNIQ----------AEHIKELE 667
Cdd:TIGR02168 884 ---SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQerlseeysltLEEAEALE 960
|
330 340
....*....|....*....|..
gi 398365697 668 N--------LHENLISLQNELK 681
Cdd:TIGR02168 961 NkieddeeeARRRLKRLENKIK 982
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
349-686 |
7.19e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 7.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 349 QLLIDLTNEKLDKLNTEREsdiaKVEKFKKRIKEL-NTEIKVLNSNQKILQEKFDASITEVNHIKGEHENTVNTLQQNEK 427
Cdd:TIGR02169 190 DLIIDEKRQQLERLRRERE----KAERYQALLKEKrEYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 428 ILNDKNVELENMKAELKG-NNDKLSEYETTLNDLNSRIVQLNDKIESTDIVLKSKENELDNLKLSLKETLSiskdfNDSD 506
Cdd:TIGR02169 266 RLEEIEQLLEELNKKIKDlGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLA-----EIEE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 507 LIGQINELISTKNNLQQKMDDLNNLNDDNLKVVQDKLIKNEET---LKLKEAEIDSLNSEMDELKKQITSKddefkmwqs 583
Cdd:TIGR02169 341 LEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETrdeLKDYREKLEKLKREINELKRELDRL--------- 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 584 kyetvEDEAKIRNAEVTELNGDIEDLKESKLHLEETITELENKVHKLENECELEKQKFEKTSLELESLQLKNSNIQaehi 663
Cdd:TIGR02169 412 -----QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE---- 482
|
330 340
....*....|....*....|...
gi 398365697 664 KELENLHENLISLQNELKISSDR 686
Cdd:TIGR02169 483 KELSKLQRELAEAEAQARASEER 505
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
225-808 |
9.70e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 62.35 E-value: 9.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 225 KLENDINEKQQE----EDFIKSNSNNVVNIDNAYKEKEDEENDITNSHINRLTPLYETSARESNSNEEGRNDYDDDNQLD 300
Cdd:TIGR04523 44 TIKNELKNKEKElknlDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 301 IRHDNFQIVAKRNEELTD----QIYHLNQMLNSLISKNESLSFQYEKLNKNHQLLIDLTNEKLDKLNTER------ESDI 370
Cdd:TIGR04523 124 VELNKLEKQKKENKKNIDkfltEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKnkllklELLL 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 371 AKVEKFKKRIKELNTEIKVLNSNQKILQEKFDASITEVNHIKGEHENTVNTLQQNEKILNDKNVELENMKAELKGNNDKL 450
Cdd:TIGR04523 204 SNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKI 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 451 SEYETTLNDLNSRIVQLNDKIESTDI-----VLKSKENELDNLKLSLKETLSISKDFNDSdlIGQINELISTKNNLQQKM 525
Cdd:TIGR04523 284 KELEKQLNQLKSEISDLNNQKEQDWNkelksELKNQEKKLEEIQNQISQNNKIISQLNEQ--ISQLKKELTNSESENSEK 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 526 DDLNNLNDDNLKVVQDKLIKNEETLKLKEAEIDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDEAKIRNAEVTELNGD 605
Cdd:TIGR04523 362 QRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSE 441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 606 IEDLkesklhlEETITELENKVHKLENECELEKQKFEKTSLELESLQlknsniqaehikelenlhENLISLQNELKISSD 685
Cdd:TIGR04523 442 IKDL-------TNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIK------------------QNLEQKQKELKSKEK 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 686 RITTLTKENEVLMEQNNNNNNSVTLSNDQKDRDDEKIKSLGKQVQDWKEKYEAKEKDTNKRLKLLAEDLYIQYSSKHEQK 765
Cdd:TIGR04523 497 ELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQT 576
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 398365697 766 VKLLKKGYENKyQNKFDQLNLENKTLSEEIEQLNKQLSSEREE 808
Cdd:TIGR04523 577 QKSLKKKQEEK-QELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
463-730 |
2.03e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 2.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 463 RIVQLNDKIESTDIVLKSKENELDNLKLSLKETLSiskdfndsdligQINELISTKNNLQQKMDDLNNL----NDDNLKV 538
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEE------------KLEELRLEVSELEEEIEELQKElyalANEISRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 539 VQDKLIKNEEtLKLKEAEIDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDEAKIRNAEVTELNGDIEDLKESKLHLEE 618
Cdd:TIGR02168 301 EQQKQILRER-LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 619 TITELENKVHKLENECELEKQKFEKTSLELESLQLKNSNIQAEHIKELENLHEnlislqNELKISSDRITTLTKENEVLM 698
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE------AELKELQAELEELEEELEELQ 453
|
250 260 270
....*....|....*....|....*....|..
gi 398365697 699 EQNNNNNNSVTLSNDQKDRDDEKIKSLGKQVQ 730
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELA 485
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
537-813 |
2.28e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 2.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 537 KVVQDKLIKNEETLKLKEAEIDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDEAKIRNAEVTELNGDIEDLKESKLHL 616
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 617 EETITELENKVHKLENECELEKQKFEKTSLELESLQLKNSNIQAEHIKELENLHENLISLQNELK-ISSDRITTLTKENE 695
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEeLEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 696 VLMEQNNNNNNSVTLSNDQKDRD--DEKIKSLGKQVQDWKEKYEAKEKDTNKRLKLLAEDLyiqysskhEQKVKLLKKGY 773
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLErlEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE--------EEEEALLELLA 466
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 398365697 774 ENKYQNKFDQLNLENKTLSEEIEQLNKQLSSEREEKQELL 813
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
249-623 |
3.18e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 3.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 249 NIDNAYKEKEDEENDITNSHINRLTPLYETSARESNSNEEGRNDYDDDNQLDIRHDNFQIVAKRNEELTDQIYHLNQMLN 328
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 329 SLISKNESLSFQYEKLNKNHQLL---IDLTNEKLDKLNTERESDIAKVEKFKKRIKELNTEIKVLNSNQKILQEKFDASI 405
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAeaeIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 406 TEVNHIKGEHENTVNTLQQNEKILNDKNVELENMKAELKGNNDKLSEYETTLNDLNSRIVQLNDKIESTDIVLKSKENEL 485
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 486 DNLKLSLketlsiskdfndSDLIGQINELISTKNNLQQKMDDLNNLNDDNLKVVQDKLIKNEETLklkEAEIDSLNSEMD 565
Cdd:TIGR02168 918 EELREKL------------AQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA---RRRLKRLENKIK 982
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 398365697 566 ELKKQITSKDDEFKMWQSKYEtvedeakirnaevtELNGDIEDLKESKLHLEETITEL 623
Cdd:TIGR02168 983 ELGPVNLAAIEEYEELKERYD--------------FLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
554-819 |
1.94e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 1.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 554 EAEIDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDEAKIRNAEVTELNGDIEDLKESKLHLEETITELENKVHKLENE 633
Cdd:TIGR02169 701 ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 634 CE-----LEKQKFEKTSLELESLQLKNSNIQAehikELENLHENLISLQNELKISSDRITTLTKENEVLMEQNNNNNNSV 708
Cdd:TIGR02169 781 LNdlearLSHSRIPEIQAELSKLEEEVSRIEA----RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 709 TLSNDQKDRDDEKIkslgkqvqdwkEKYEAKEKDTNKRLKLLAEDLyiqysSKHEQKVKLLKKGYeNKYQNKFDQLNLEN 788
Cdd:TIGR02169 857 ENLNGKKEELEEEL-----------EELEAALRDLESRLGDLKKER-----DELEAQLRELERKI-EELEAQIEKKRKRL 919
|
250 260 270
....*....|....*....|....*....|.
gi 398365697 789 KTLSEEIEQLNKQLSSEREEKQELLKLLENE 819
Cdd:TIGR02169 920 SELKAKLEALEEELSEIEDPKGEDEEIPEEE 950
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
217-818 |
4.51e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 4.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 217 FNINTDTLKLENDINEKQQEEDFIKSNSNNVVNIDNAYKEKEDEENDITNSHINRLTPLYETSARESNSNEEGRNDY--- 293
Cdd:TIGR02168 291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELeel 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 294 -----DDDNQLD-IRHDNFQIVAKRN------EELTDQIYHLNQMLNSLISKNESLSFQYEKLNKN-HQLLIDLTNEKLD 360
Cdd:TIGR02168 371 esrleELEEQLEtLRSKVAQLELQIAslnneiERLEARLERLEDRRERLQQEIEELLKKLEEAELKeLQAELEELEEELE 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 361 KLNTERESDIAKVEKFKKRIKELNTEIKVLNSNQKILQEKFDASITEVNHIKGEHENTVNTLQQNEKILNDKNVELENMK 440
Cdd:TIGR02168 451 ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELIS 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 441 AElkgnndklSEYETTLN-----DLNSRIVQLNDKIESTDIVLKSKEN------ELDNLKLSLKETLSISKDFNDSDLIG 509
Cdd:TIGR02168 531 VD--------EGYEAAIEaalggRLQAVVVENLNAAKKAIAFLKQNELgrvtflPLDSIKGTEIQGNDREILKNIEGFLG 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 510 QINELISTK-----------------NNLQQKMDDLNNLNDDNLKVVQD-KLIKNEETL----KLKEAEIDSLNSEMDEL 567
Cdd:TIGR02168 603 VAKDLVKFDpklrkalsyllggvlvvDDLDNALELAKKLRPGYRIVTLDgDLVRPGGVItggsAKTNSSILERRREIEEL 682
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 568 KKQItskddefKMWQSKYETVEDEAKIRNAEVTELNGDIEDLKESKLHLEETITELENKVHKLENECELEKQKFEKTSLE 647
Cdd:TIGR02168 683 EEKI-------EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 648 LESLQLKNSNIQAEHIKELENLHE------------------------NLISLQNELKISSDRITTLTKENEVLMEQNNN 703
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEaeaeieeleaqieqlkeelkalreALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 704 NNNSVTLSNDQKDRDDEKIKSLGKQVQDWKEKYEAKEKDTNKRLKLLAEdlyiqysskHEQKVKLLKKGYENKyQNKFDQ 783
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS---------LEEALALLRSELEEL-SEELRE 905
|
650 660 670
....*....|....*....|....*....|....*
gi 398365697 784 LNLENKTLSEEIEQLNKQLSSEREEKQELLKLLEN 818
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
544-820 |
5.66e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 5.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 544 IKNEETLKLKEA---EIDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDEAKIRNAEVTELNGDIEDLKESklhleetI 620
Cdd:COG1196 218 LKEELKELEAELlllKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAE-------E 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 621 TELENKVHKLENECELEKQKFEKTSLELESLQLKNSNIQAEHIKELENLHENLISLQNELKISSDRITTLTKENEVLMEQ 700
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 701 NNNNNNSVTLSNDQKDRDDEKIKSLGKQVQDWKEKYEAKEKDTNKRLKLLAEDLYIQYSSKHEQKVKLLKKGYENKYQNK 780
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 398365697 781 FDQLNLENKTLSEEIEQLNKQLSSEREEKQELLKLLENEK 820
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
219-817 |
5.73e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.58 E-value: 5.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 219 INTDTLKLENDINEKQQEEDFIKSNSNNvvNIDNAYKEKEDEENDITNSHINRLTPLYE--TSAR-ESNSNEegrndydd 295
Cdd:pfam15921 229 LDTEISYLKGRIFPVEDQLEALKSESQN--KIELLLQQHQDRIEQLISEHEVEITGLTEkaSSARsQANSIQ-------- 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 296 dNQLDIRHDNFQivaKRNEELTDQIYHLNQMLNSLISKNESLSFQYEKLNKNHQLLIDLTNEKLDKLNTERESDIAK--- 372
Cdd:pfam15921 299 -SQLEIIQEQAR---NQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQEsgn 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 373 --------VEKFKKRIKELNTEIKvlnSNQKILQEKFDASITeVNHIKGEHENTVNTLQQNEKILndknvelENMKAELK 444
Cdd:pfam15921 375 lddqlqklLADLHKREKELSLEKE---QNKRLWDRDTGNSIT-IDHLRRELDDRNMEVQRLEALL-------KAMKSECQ 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 445 GNNDKLSEYETTLNDLNSRIVQLNDKIESTDIVLKSKENELDNLKLSLKetlsiSKDFNDSDLIGQINElistknnlQQK 524
Cdd:pfam15921 444 GQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLE-----SSERTVSDLTASLQE--------KER 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 525 MDDLNNLNDDNLKVVQDKLIKNEETLKLKEAEIDSLNSEMDELKKQITSKDDEFKMWQSKYET----VEDEAKIRNAEVT 600
Cdd:pfam15921 511 AIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENmtqlVGQHGRTAGAMQV 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 601 ELNGDIEDLKESKLHLEETitelenKVHKLENECELEKQKFEKTSLELESLQLKNSNiqAEHIKELENLHENLISLQNEL 680
Cdd:pfam15921 591 EKAQLEKEINDRRLELQEF------KILKDKKDAKIRELEARVSDLELEKVKLVNAG--SERLRAVKDIKQERDQLLNEV 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 681 KISSDRITTLTKENEVLMEQNNNNNNSVTLSNDQKDRddeKIKSLGKQVQDWKEKYEAKEKDTNKRLKlLAEDLYIQYSS 760
Cdd:pfam15921 663 KTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKM---QLKSAQSELEQTRNTLKSMEGSDGHAMK-VAMGMQKQITA 738
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 398365697 761 KHEQ------KVKLLKKGYENKyqnkfdqlNLENKTLSEEIEQLNKQLSSEREEKQELLKLLE 817
Cdd:pfam15921 739 KRGQidalqsKIQFLEEAMTNA--------NKEKHFLKEEKNKLSQELSTVATEKNKMAGELE 793
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
311-821 |
8.08e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 8.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 311 KRNEELTDQIYHLNQMLNSLISKNESLSFQYEKLNKNHQLLIDLtNEKLDKLNTERESDIAKVEKFKKRIKELNTEIKVL 390
Cdd:PRK03918 200 KELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEEL-EKELESLEGSKRKLEEKIRELEERIEELKKEIEEL 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 391 NSNQKILqEKFDASITEVNHIKGEHENTVNTLQQNEKILNDKNVELENMKAELKgnndKLSEYETTLNDLNSRIVQLNDK 470
Cdd:PRK03918 279 EEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK----ELEEKEERLEELKKKLKELEKR 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 471 IEstdiVLKSKENELDNLKLSLKETLSISKDFND---SDLIGQINELISTKNNLQQKMDDLNNLNDDNLKVVQDkLIKNE 547
Cdd:PRK03918 354 LE----ELEERHELYEEAKAKKEELERLKKRLTGltpEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKE-LKKAI 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 548 ETLKLKEAEIDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDEAKIRNAEVTELNGDIEDLKESKL----HLEETITEL 623
Cdd:PRK03918 429 EELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELiklkELAEQLKEL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 624 ENKVHKLE-NECELEKQKFEKTSLELESLQLKNSNIQAEhIKELENLHENLISLQNELKISSDRITTLTKE--------- 693
Cdd:PRK03918 509 EEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKE-LEKLEELKKKLAELEKKLDELEEELAELLKEleelgfesv 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 694 ---NEVLMEQNNNNNNSVTLSNDQKDRDDEKIKSlgKQVQDWKEKYEAKEKDTNKRLKLLAEDLyiqysskHEQKVKLLK 770
Cdd:PRK03918 588 eelEERLKELEPFYNEYLELKDAEKELEREEKEL--KKLEEELDKAFEELAETEKRLEELRKEL-------EELEKKYSE 658
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 398365697 771 KGYENKYqNKFDQLNLENKTLSEEIEQLNKQlsseREEKQELLKLLENEKK 821
Cdd:PRK03918 659 EEYEELR-EEYLELSRELAGLRAELEELEKR----REEIKKTLEKLKEELE 704
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
322-752 |
9.95e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.81 E-value: 9.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 322 HLNQMLNSLISKNESLSFQYEKLNK------NHQLLIDLTNEKLDKLNTEresdiakVEKFKKRIKELNTEIKVLNSNQK 395
Cdd:pfam15921 378 QLQKLLADLHKREKELSLEKEQNKRlwdrdtGNSITIDHLRRELDDRNME-------VQRLEALLKAMKSECQGQMERQM 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 396 ILQEKFDASITEVNHIKGEHENTVNTLQQNEKILNDKNVELENMKAELKGNNDKLSEYETTLNDLNSRIVQLNDKIESTD 475
Cdd:pfam15921 451 AAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKL 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 476 IVLKSKENELDNLKLSLKETLSISKDFNDSDLIGQInelistknnLQQKMDDLNNLNDDNLKVVQDKLIKNEETlklkEA 555
Cdd:pfam15921 531 QELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEI---------LRQQIENMTQLVGQHGRTAGAMQVEKAQL----EK 597
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 556 EIDSLNSEMDELKKQITSKDDEFKMWQSKYETVE-DEAKIRNAEVTELNGdIEDLKESKLHLEETITELENKVHKLENEC 634
Cdd:pfam15921 598 EINDRRLELQEFKILKDKKDAKIRELEARVSDLElEKVKLVNAGSERLRA-VKDIKQERDQLLNEVKTSRNELNSLSEDY 676
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 635 ELEKQKFEKTSLELES------LQLKNSNIQAEHI----------------------KELENLHENLISLQNELKISSDR 686
Cdd:pfam15921 677 EVLKRNFRNKSEEMETttnklkMQLKSAQSELEQTrntlksmegsdghamkvamgmqKQITAKRGQIDALQSKIQFLEEA 756
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 398365697 687 ITTLTKENEVLMEQNNNNNNSVTLSNDQKDRDDEKIKSLGKQVQDWKEKYEAKEKDTNKRLKLLAE 752
Cdd:pfam15921 757 MTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAE 822
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
363-821 |
1.13e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 363 NTERESDIAKVEKFKKRIKELNTEIKVLNSNQKILQEKFDASITEVNHIKGEHENTVNTLQQNEKILNDKNVELENMKAE 442
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 443 LKGNNDKLSEYETTLNDLNSRIVQLNDKIESTDIVLKSKENELDNLKLSLKETLSISKDFNDsdligQINELISTKNNLQ 522
Cdd:TIGR04523 112 IKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELEN-----ELNLLEKEKLNIQ 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 523 QKMDDLNNLNDDNLKVVQDKLIKNEETLKLkEAEIDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDEAKIRNAEVTEL 602
Cdd:TIGR04523 187 KNIDKIKNKLLKLELLLSNLKKKIQKNKSL-ESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 603 NGDIEDLKESKLHLEETITELENKVHKLENECE-LEKQKFEKTSLELESLQLKNSNIQAEHIKELENLHENLISLQNELK 681
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIKELEKQLNQLKSEISdLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQIS 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 682 ISSDRITTLTKENEVLMEQNNNNNNSVTLSNDQKDRDDEKIKSLGKQVQDWKEKYEAKEKDtNKRLKLLAEDLYIQYSSK 761
Cdd:TIGR04523 346 QLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKL-NQQKDEQIKKLQQEKELL 424
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 398365697 762 HEQKVKLLKKGYENKYQ-----NKFDQLNLENKTLSEEIEQLNKQLSSEREEKQELLKLLENEKK 821
Cdd:TIGR04523 425 EKEIERLKETIIKNNSEikdltNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQK 489
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
346-624 |
1.66e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 1.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 346 KNHQLLIDLTNEKLDKLNTERESDIAKVEKFKKRIKELNTEIKVLNSNQKILQEKFDASITEVNHIKGEHENTVNTLQQN 425
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 426 EKILNDKNVELENMKAELKGNNDKLSEYETTLNDLNSRIVQLNDKIESTDIVLKSKENELDNLKLSLKETLSiskdfNDS 505
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE-----ELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 506 DLIGQINELISTKNNLQQKMDDLNNLNDDNLKVVQDKLIKNEETLKLKEAEIDSLNSEMDELKKQITSKDDEfkmwQSKY 585
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL----LELL 465
|
250 260 270
....*....|....*....|....*....|....*....
gi 398365697 586 ETVEDEAKIRNAEVTELNGDIEDLKESKLHLEETITELE 624
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
537-821 |
2.78e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 2.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 537 KVVQDKLIKNEETLKLKEAEIDSLNSEMDELKKQiTSKDDEFKmwqskyetvEDEAKIRNAEVTELNGDIEDLKESKLHL 616
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQ-AEKAERYK---------ELKAELRELELALLVLRLEELREELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 617 EETITELENKVHKLENECELEKQKFEKTSLELESLQLKNSNIQaehiKELENLHENLISLQNELKISSDRITTLTKENEV 696
Cdd:TIGR02168 245 QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ----KELYALANEISRLEQQKQILRERLANLERQLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 697 LMEQNNNNNNSVTLSNDQKDRDDEKIKSLGKQVQDWKEKYEAKEKDTN--KRLKLLAEDLYIQYSSKHEQKvkllkkgye 774
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEelESRLEELEEQLETLRSKVAQL--------- 391
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 398365697 775 nkyQNKFDQLNLENKTLSEEIEQLNKQLSSEREEKQELLKLLENEKK 821
Cdd:TIGR02168 392 ---ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL 435
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
422-612 |
2.88e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 2.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 422 LQQNEKILNDKNVELENMKAELKGNNDKLSEYETTLNDLNSRIVQLNDKIESTDIVLKSKENELDNLKLSLKETLSISkd 501
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAL-- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 502 FNDSDLIGQINELISTKN--------NLQQKMDDLNNLNDDNLKVVQDKLIKNEETLKLKEAEIDSLNSEMDELKKQITS 573
Cdd:COG3883 96 YRSGGSVSYLDVLLGSESfsdfldrlSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA 175
|
170 180 190
....*....|....*....|....*....|....*....
gi 398365697 574 KDDEFkmwQSKYETVEDEAKIRNAEVTELNGDIEDLKES 612
Cdd:COG3883 176 QQAEQ---EALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
310-573 |
7.14e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 7.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 310 AKRNEELTDQIYHLNQMLNSLISKNESLSFQYEKLN---KNHQLLIDLTNEKLDKLNTERESDIAKVEKFKKRIKELNTE 386
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEeelEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 387 IKVLNSNQKILQEKF---DASITEVNHIKGEHENTVNTLQ----QNEKILNDKNVELENMKAELKGNNDKLSEYETTLND 459
Cdd:TIGR02168 297 ISRLEQQKQILRERLanlERQLEELEAQLEELESKLDELAeelaELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 460 ---------------------LNSRIVQLNDKIESTdivlkskENELDNLKLSLKETLSISKDFNDSDLIGQINELISTK 518
Cdd:TIGR02168 377 leeqletlrskvaqlelqiasLNNEIERLEARLERL-------EDRRERLQQEIEELLKKLEEAELKELQAELEELEEEL 449
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 398365697 519 NNLQQKMDDlnnlnddnlkvVQDKLIKNEETLKLKEAEIDSLNSEMDELKKQITS 573
Cdd:TIGR02168 450 EELQEELER-----------LEEALEELREELEEAEQALDAAERELAQLQARLDS 493
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
372-592 |
8.12e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.98 E-value: 8.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 372 KVEKFKKRIKELNTEIKVLNSNQKILQEKFDASITEVNHIKGEHENTVNTLQQNEKILNDKNVELENMKAELK------- 444
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGeraraly 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 445 ---GNNDKLSEY--ETTLNDLNSRIVQLNDKIES-TDIV--LKSKENELDNLKLSLKETLsiskdfndSDLIGQINELIS 516
Cdd:COG3883 97 rsgGSVSYLDVLlgSESFSDFLDRLSALSKIADAdADLLeeLKADKAELEAKKAELEAKL--------AELEALKAELEA 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 398365697 517 TKNNLQQKMDDLnnlnddnlkvvQDKLIKNEETLKLKEAEIDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDEA 592
Cdd:COG3883 169 AKAELEAQQAEQ-----------EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
555-808 |
1.00e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 555 AEIDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDEAKIRNAEVTELNGDIEDLKESKLHLEETITELENKVHKLENEC 634
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 635 ELEKQKFEKTsleLESLQLKNSNIQAEHIKELENLHENLISLQnelkissdRITTLTKENEVLMEQNNNNNNSVTLSNDQ 714
Cdd:COG4942 100 EAQKEELAEL---LRALYRLGRQPPLALLLSPEDFLDAVRRLQ--------YLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 715 KDRDDEKIKSLGKQVQDWKEKYEAKEKDTNKRLKLLAEDlyiqysskheqkvkllkkgyENKYQNKFDQLNLENKTLSEE 794
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKE--------------------LAELAAELAELQQEAEELEAL 228
|
250
....*....|....
gi 398365697 795 IEQLNKQLSSEREE 808
Cdd:COG4942 229 IARLEAEAAAAAER 242
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
545-632 |
1.01e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.00 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 545 KNEETLKLKEAEIDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDEAKI---RNAEVTELNGDIEDLkESKLH-LEETI 620
Cdd:COG2433 410 EEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERReirKDREISRLDREIERL-ERELEeERERI 488
|
90
....*....|..
gi 398365697 621 TELENKVHKLEN 632
Cdd:COG2433 489 EELKRKLERLKE 500
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
397-814 |
1.13e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 397 LQEKFDASITEVNHIKGEHENTVNTLQQNEKILND---KNVELENMKAELKGNNDKLSEYETTLNDLNSRIVQLNDKIES 473
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEheeRREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 474 -----TDIVLKSKENELDNLKLSL-KETLSISKDFNDSDL------IGQINELISTKNNLQQKMDDLNNLNDDNLKVVQD 541
Cdd:PRK02224 291 leeerDDLLAEAGLDDADAEAVEArREELEDRDEELRDRLeecrvaAQAHNEEAESLREDADDLEERAEELREEAAELES 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 542 KLIKNEETLKLKEAEIDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDEAKIRNAEVTELNGDI----EDLKESKLHLE 617
Cdd:PRK02224 371 ELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLrtarERVEEAEALLE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 618 E-----------------TITELENKVHKLENECELEKQKFEKTSLELESL-QLKNSNIQAEHIKELENLHENLISLQNE 679
Cdd:PRK02224 451 AgkcpecgqpvegsphveTIEEDRERVEELEAELEDLEEEVEEVEERLERAeDLVEAEDRIERLEERREDLEELIAERRE 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 680 -LKISSDRITTLTKENEVLMEQNNNNNNSVTLSNDQKDRDDEKIKSLGKQVQDWKEKYEAKEK---------DTNKRLKL 749
Cdd:PRK02224 531 tIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERirtllaaiaDAEDEIER 610
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 398365697 750 LAEDLYiQYSSKHEQKVKLLKKGYENKYQ-------NKFDQLNLENKTLSEEIEQLNKQLSSEREEKQELLK 814
Cdd:PRK02224 611 LREKRE-ALAELNDERRERLAEKRERKREleaefdeARIEEAREDKERAEEYLEQVEEKLDELREERDDLQA 681
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
298-815 |
1.18e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 298 QLDIRHDNFQIVAKRNEELTDQIYHLNQMLNSLISKNESlsfQYEKLNKNHQLLIDLTNEK--------LDKLNTERE-- 367
Cdd:TIGR00618 213 MPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREA---QEEQLKKQQLLKQLRARIEelraqeavLEETQERINra 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 368 -------SDIAKVEKFKKRIKELNTEIKV-LNSNQKILQEKFDASITEVNhiKGEHENTVNTLQQNEKILNDKNVELENM 439
Cdd:TIGR00618 290 rkaaplaAHIKAVTQIEQQAQRIHTELQSkMRSRAKLLMKRAAHVKQQSS--IEEQRRLLQTLHSQEIHIRDAHEVATSI 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 440 KAElkgnndklSEYETTLNDlnsRIVQLNDKIEstdiVLKSKENELDNLKLSLKEtlsiskdfndsdLIGQINELISTKN 519
Cdd:TIGR00618 368 REI--------SCQQHTLTQ---HIHTLQQQKT----TLTQKLQSLCKELDILQR------------EQATIDTRTSAFR 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 520 NLQQKMDDLNNLNDDNLKVVQDKLIKNEETL---KLKEAEIDSLNSEMDELKKQITSKddefkmwQSKYETVEDEAKIRN 596
Cdd:TIGR00618 421 DLQGQLAHAKKQQELQQRYAELCAAAITCTAqceKLEKIHLQESAQSLKEREQQLQTK-------EQIHLQETRKKAVVL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 597 AEVTELNGDIEDLKESKLHLEETITELEN------KVHKLENECELEKQKFEKTSLELESLqLKNSNIQAEHIKELENLH 670
Cdd:TIGR00618 494 ARLLELQEEPCPLCGSCIHPNPARQDIDNpgpltrRMQRGEQTYAQLETSEEDVYHQLTSE-RKQRASLKEQMQEIQQSF 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 671 ENLISLQNELKISSDRITTLTKENEVLMEQNNNNNNSVTLSN-DQKDRDDEKIKSLGK-QVQDWKEKYEAKEKDTnkrLK 748
Cdd:TIGR00618 573 SILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQhALLRKLQPEQDLQDVrLHLQQCSQELALKLTA---LH 649
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 398365697 749 LLAEDLYIQYSSKHEQKVKLLKKGYENKYQNKFDQLNLENKTLSEEIEQLNKQLSSEREEKQELLKL 815
Cdd:TIGR00618 650 ALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEY 716
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
341-819 |
1.23e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 341 YEKLNKNHQLLIDLTNEKLDKLnterESDIAKVEKFKKRIKELNTEIKVLNSNQKILQEKFDASITEVNHIKGEHEntvn 420
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERL----EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK---- 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 421 TLQQNEKILNDKNVELENMKAELKGNNDKLSEYETTLNDLNSRIVQLNDKIESTDiVLKSKENELDNLKLSLKETLSISK 500
Cdd:PRK03918 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELR 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 501 DFND--SDLIGQINELISTKNNLQQKmDDLNNLNDDNLKVVQDKLIKNEETLKLKEaEIDSLNSEMDELKKQITSK---- 574
Cdd:PRK03918 311 EIEKrlSRLEEEINGIEERIKELEEK-EERLEELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTGLtpek 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 575 -DDEFKMWQSKYETVEDEAKIRNAEVTELNGDIEDLKESKLHLEEtiTELENKVHKLENECELEKQKFEKTSLELESLql 653
Cdd:PRK03918 389 lEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK--AKGKCPVCGRELTEEHRKELLEEYTAELKRI-- 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 654 knSNIQAEHIKELENLHENLISLQNELKISSdRITTLTKENEVLMEQNNNNNNSVTLSNDQKDRDDEKIKS----LGKQV 729
Cdd:PRK03918 465 --EKELKEIEEKERKLRKELRELEKVLKKES-ELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEklikLKGEI 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 730 QDWKEKYEaKEKDTNKRLKLLAEDLYIQYSSKHEQKVKLLKKGYENkyqnkFDQLNLENKTLSEEIEQLNKQLSSERE-- 807
Cdd:PRK03918 542 KSLKKELE-KLEELKKKLAELEKKLDELEEELAELLKELEELGFES-----VEELEERLKELEPFYNEYLELKDAEKEle 615
|
490
....*....|..
gi 398365697 808 EKQELLKLLENE 819
Cdd:PRK03918 616 REEKELKKLEEE 627
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
398-647 |
1.78e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 398 QEKFDASITEVNHIKGEHENTVNTLQQNEKILNDKNVELENMKAELKGNNDKLSEYETTLNDLNSRIVQLNDKIESTdiv 477
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL--- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 478 lkskENELDNLKLSLKETLsiskdfNDSDLIGQINEListKNNLQQKMDDLNNLNDDNLKVVQDKLIKNEETLKLKEAEI 557
Cdd:COG4942 96 ----RAELEAQKEELAELL------RALYRLGRQPPL---ALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 558 DSLNSEMDELKKQITSKDDEfkmWQSKYETVEDEAKIRNAEVTELNGDIEDLKESKLHLEETITELENKVHKLENECELE 637
Cdd:COG4942 163 AALRAELEAERAELEALLAE---LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
250
....*....|
gi 398365697 638 KQKFEKTSLE 647
Cdd:COG4942 240 AERTPAAGFA 249
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
547-671 |
2.03e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 2.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 547 EETLKLKEAEIDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDE-AKIRNA-EVTELNGDIEDLKESKLHLEETITELE 624
Cdd:COG1579 37 EDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlGNVRNNkEYEALQKEIESLKRRISDLEDEILELM 116
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 398365697 625 NKVHKLENECELEKQKFEKTSLELESLQLKNSNIQAEHIKELENLHE 671
Cdd:COG1579 117 ERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
356-812 |
2.49e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.63 E-value: 2.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 356 NEKLDKLNTERESDIAKVEKFKKRIKELNTEIKVLNSNQKILQEKFDASITEVNHIKGEhentvntLQQNEKILNDKNVE 435
Cdd:TIGR04523 74 NNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQ-------KKENKKNIDKFLTE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 436 LENMKAELKGNNDKLS-------EYETTLNDLNSRIVQLNDKIESTDIVLKSKENELDNLKLSLKETLSISKDFNDSDLI 508
Cdd:TIGR04523 147 IKKKEKELEKLNNKYNdlkkqkeELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQ 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 509 -GQINELISTKNNLQQKMDDLNNLNDDNLKVVQDKLIKNEETLKLKEAEIDSLNSEMDELKKQITS------------KD 575
Cdd:TIGR04523 227 nNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQlkseisdlnnqkEQ 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 576 DEFKMWQSKYETVEDEAKIRNAEVTELNGDIEDLKESKLHLEETITELENKVHKLENECELEKQKFEKTSLELESLQLKN 655
Cdd:TIGR04523 307 DWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEI 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 656 SNIqaehIKELENLHENLISLQNELKISSDRITTLTKENEVLMEQNNNNNNSVTLSNDQKDRDDEKIKSLGKQVQDWKEK 735
Cdd:TIGR04523 387 KNL----ESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNT 462
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 398365697 736 YEAKEKDTNKrlkllAEDLYIQYSSKHEQKVKLLKKGyenkyQNKFDQLNLENKTLSEEIEQLNKQLSSEREEKQEL 812
Cdd:TIGR04523 463 RESLETQLKV-----LSRSINKIKQNLEQKQKELKSK-----EKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKL 529
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
157-593 |
2.64e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.63 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 157 INKKLKLQLESVPDLKQSSTKDIINDKEEIMSSPMAIDMIETNISPNKFIINDGVERNDSFNINTDTLKLENDINEKQQE 236
Cdd:TIGR04523 226 QNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 237 EDFIKSNSNNVVNIDnayKEKEDEENDITNSHINRLTPLYETSARESNSNEEGRNDYDDDNQLDIRHDNFQIVAKRNEEL 316
Cdd:TIGR04523 306 QDWNKELKSELKNQE---KKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSY 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 317 TDQIYHLNQMLNSLISKNEslsfQYEKLNKNHQLLIDLTNEKLDKLNTERESDIAKVEKFKKRIKELNTEIKVLNSNQKI 396
Cdd:TIGR04523 383 KQEIKNLESQINDLESKIQ----NQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKN 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 397 LQEKFDASITEVNHIKGEHENTVNTLQQNEKILNDKNVELENMKAELKgnndklsEYETTLNDLNSRIVQLNDKIESTDI 476
Cdd:TIGR04523 459 LDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKK-------ELEEKVKDLTKKISSLKEKIEKLES 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 477 VLKSKENELDNLKLSLKETLSISKDFNDSDLIGQINELISTKNNLQQKMDDLNNLNDDNLKVVQDKLIKNEETLKLKEAE 556
Cdd:TIGR04523 532 EKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKK 611
|
410 420 430
....*....|....*....|....*....|....*..
gi 398365697 557 IDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDEAK 593
Cdd:TIGR04523 612 ISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVK 648
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
230-819 |
3.17e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.66 E-value: 3.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 230 INEKQQEEDFIKSNSNNVVNIDNAYKEKEDEENDITNSHINRLtplyetsaresnsneegRNDYDDDnQLDIRHDNFQIV 309
Cdd:TIGR01612 834 INEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNKI-----------------KAEISDD-KLNDYEKKFNDS 895
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 310 AKRNEELTDQIYHLNQMLNSLISKNEslsfqYEKLNKNHQLLIDLTNEKLDKLNteresdiakvEKFKKRIKelntEIKV 389
Cdd:TIGR01612 896 KSLINEINKSIEEEYQNINTLKKVDE-----YIKICENTKESIEKFHNKQNILK----------EILNKNID----TIKE 956
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 390 LNSNQKILQEKFDASITEvNHIKGEHENTVNTLQQNEKILNDKNVELENMKAELKGNND-----KLSEYETTLNDLNSRI 464
Cdd:TIGR01612 957 SNLIEKSYKDKFDNTLID-KINELDKAFKDASLNDYEAKNNELIKYFNDLKANLGKNKEnmlyhQFDEKEKATNDIEQKI 1035
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 465 VQLNDKIESTDIVLKSkenELDNLKLSLKETLSISKDFNDSDLIGQINELISTKNNLQQKMDDLNNLNDDNLKVVQ--DK 542
Cdd:TIGR01612 1036 EDANKNIPNIEIAIHT---SIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNEIKEKLKHYNFDDFGKEENIKyaDE 1112
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 543 LIKNEETLKLKEAEIDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDEAkIRNAEVTELNGDIEDLK---ESKLHLEET 619
Cdd:TIGR01612 1113 INKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKA-ISNDDPEEIEKKIENIVtkiDKKKNIYDE 1191
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 620 ITELENKVHKLE-NECELEKQK-----FEKTSLELESLQLKNSNIQAEH--------IKELENLHENLISLQNELKISSD 685
Cdd:TIGR01612 1192 IKKLLNEIAEIEkDKTSLEEVKginlsYGKNLGKLFLEKIDEEKKKSEHmikameayIEDLDEIKEKSPEIENEMGIEMD 1271
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 686 rittLTKENEVL-MEQNNNNNNSVTLSNDQKDRDDEKIKSLgKQVQDWKEKYEAkeKDTNKRLKllaedLYIQYSSKHEQ 764
Cdd:TIGR01612 1272 ----IKAEMETFnISHDDDKDHHIISKKHDENISDIREKSL-KIIEDFSEESDI--NDIKKELQ-----KNLLDAQKHNS 1339
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 398365697 765 KVKLLKKGYENKYQ----NKFDQLNLENKTLSEEIEQLNKQLSSEREEKQELLKLLENE 819
Cdd:TIGR01612 1340 DINLYLNEIANIYNilklNKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDD 1398
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
314-820 |
3.39e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 3.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 314 EELTDQIYHLNQMLNSLISKNESLSFQYEKLNKNHQLLIDLTNEKLDKLNTERESDIAKVEKFKKRIKELNTEIKVLNSN 393
Cdd:pfam15921 81 EEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCL 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 394 QKILQEKFDASITEVNHIKGEHENTVNTLQ---------QNEKILNDKNVELENMKAELKGNNDKLSEYETTLNDLNSRI 464
Cdd:pfam15921 161 KEDMLEDSNTQIEQLRKMMLSHEGVLQEIRsilvdfeeaSGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRI 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 465 VQLNDKIESTDIVLKSKENELDNLKLSLKETLSISKDFNDSDLIGQINELISTKNNLQQKMDDLNNLNDDNLKVVQDKLI 544
Cdd:pfam15921 241 FPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLS 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 545 KNEETlklkeaeIDSLNSEMDELKKqitskddefkMWQSKYETVEDEAKIRNAEVTELNGDIEDLKESKLHLEETITELE 624
Cdd:pfam15921 321 DLEST-------VSQLRSELREAKR----------MYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 625 NKVHKLENECELEKQKFEK-------TSLELESL--QLKNSNIQAEHIKELENLHENLISLQNELKISS--------DRI 687
Cdd:pfam15921 384 ADLHKREKELSLEKEQNKRlwdrdtgNSITIDHLrrELDDRNMEVQRLEALLKAMKSECQGQMERQMAAiqgkneslEKV 463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 688 TTLTKENEVLMEQNNNNNNSVTLSNDQKDRDDEKIKSLGKQVQDWKEKYEA-----------------------KEKDTN 744
Cdd:pfam15921 464 SSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEAtnaeitklrsrvdlklqelqhlkNEGDHL 543
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 398365697 745 KRLKLLAEDLYIQYSSKhEQKVKLLKKGYENKYQnKFDQLNLENKTLSEEIEQLNKQLSSEREEKQElLKLLENEK 820
Cdd:pfam15921 544 RNVQTECEALKLQMAEK-DKVIEILRQQIENMTQ-LVGQHGRTAGAMQVEKAQLEKEINDRRLELQE-FKILKDKK 616
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
309-654 |
5.11e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 5.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 309 VAKRNEELTDQIYHLNQMLNSLISKNESLSFQYEKLNKNHQLL----IDLTNEKLDKLNTERESDIAKVEKFKKRIKELN 384
Cdd:PRK03918 396 LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgRELTEEHRKELLEEYTAELKRIEKELKEIEEKE 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 385 TEIKVLNSNQKILQEKFDASITEvnhikgehENTVNTLQQNEKILNDKNVElenmkaELKGNNDKLSEYETTLNDLNSRI 464
Cdd:PRK03918 476 RKLRKELRELEKVLKKESELIKL--------KELAEQLKELEEKLKKYNLE------ELEKKAEEYEKLKEKLIKLKGEI 541
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 465 VQLNDKIESTDIVLKSK---ENELDNLKLSLKETLSISKDFNDSDligqINELISTKNNLQQ--KMDDLNNLNDDNLKVV 539
Cdd:PRK03918 542 KSLKKELEKLEELKKKLaelEKKLDELEEELAELLKELEELGFES----VEELEERLKELEPfyNEYLELKDAEKELERE 617
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 540 QDKLIKNEETLKLKEAEIDSLNSEMDELKKQITSKDDEFKmwQSKYETVEDEAKIRNAEVTELNGDIEDLKESKLHLEET 619
Cdd:PRK03918 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKT 695
|
330 340 350
....*....|....*....|....*....|....*
gi 398365697 620 ITELENKVHKLEnECELEKQKFEKTSLELESLQLK 654
Cdd:PRK03918 696 LEKLKEELEERE-KAKKELEKLEKALERVEELREK 729
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
377-613 |
7.31e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.08 E-value: 7.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 377 KKRIKELNTEIKVLNSNQKILQEKFDasiTEVNHIKGEHENTVNTLQQNEKILNDKNVELENMKAELKGNNDKLSE---- 452
Cdd:PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIK---TYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNlvmd 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 453 ---YETTLNDLNSRIVQLNDKIESTDIVLKSKENEldnlklslKETLSISKDFNDSDliGQINELISTKNNLQQKMDDLN 529
Cdd:PHA02562 250 iedPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKG--------GVCPTCTQQISEGP--DRITKIKDKLKELQHSLEKLD 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 530 NLNDDNLKVVQDKlikNEETLKLKEaeidsLNSEMDELKKQITSKDDEFKMWQSKYETVEDEAKIRNAEVTELNGDIEDL 609
Cdd:PHA02562 320 TAIDELEEIMDEF---NEQSKKLLE-----LKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391
|
....
gi 398365697 610 KESK 613
Cdd:PHA02562 392 VKTK 395
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
406-737 |
8.22e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.81 E-value: 8.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 406 TEVNHIKGEHENTVNTLQQNEKILNDKNVELENMKAELKGNNDKLSEyetTLNDLNSRIVQLNDKIESTDivlKSKENEL 485
Cdd:pfam05557 2 AELIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESD---RNQELQKRIRLLEKREAEAE---EALREQA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 486 DNLKLSLKETLSISKDFND-SDLIGQINELISTKNN----LQQKMDDLNNLNDDNLKVVQDKLIKNEEtLKLKEAEIDSL 560
Cdd:pfam05557 76 ELNRLKKKYLEALNKKLNEkESQLADAREVISCLKNelseLRRQIQRAELELQSTNSELEELQERLDL-LKAKASEAEQL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 561 NSEMDELKKQITSKDDEFKMWQSKYETVEDEAKI------RNAEVTELNGDIEDLKESKLHLEETITE---LENKVHKLE 631
Cdd:pfam05557 155 RQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIvknsksELARIPELEKELERLREHNKHLNENIENkllLKEEVEDLK 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 632 NECElekqKFEKTSLELESLQLKNSNIQAEhIKELENLHENLISLQNELKISSDRITTLTKENEVLMEQNNNNNNSVTLS 711
Cdd:pfam05557 235 RKLE----REEKYREEAATLELEKEKLEQE-LQSWVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTSSARQL 309
|
330 340
....*....|....*....|....*.
gi 398365697 712 NDQKDRDDEKIKSLGKQVQDWKEKYE 737
Cdd:pfam05557 310 EKARRELEQELAQYLKKIEDLNKKLK 335
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
306-501 |
8.90e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.99 E-value: 8.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 306 FQIVAKRNEELTDQIYHLNQMLNSLISKNESLSFQYEKLNKNHQLLIDLTNEKLDKLNTERESDIAKVEKF----KKRIK 381
Cdd:PRK05771 31 VHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEikelEEEIS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 382 ELNTEIKVLNSNQKILQ--EKFDA------------------SITEVNHIKGEHENTVNTLQQNEK------ILNDKNVE 435
Cdd:PRK05771 111 ELENEIKELEQEIERLEpwGNFDLdlslllgfkyvsvfvgtvPEDKLEELKLESDVENVEYISTDKgyvyvvVVVLKELS 190
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 398365697 436 lENMKAELKGNNdkLSEYET--------TLNDLNSRIVQLNDKIESTDIVLKSKENELDNLKLSLKETLSISKD 501
Cdd:PRK05771 191 -DEVEEELKKLG--FERLELeeegtpseLIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELE 261
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
372-821 |
9.17e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 9.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 372 KVEKFKKRIKELNTEIKVLNSNQKILQEKFDASITEVNHIKGEHENTVNTLQQNEKILNDKNVELENMKAELKGNNDKLS 451
Cdd:TIGR04523 97 KINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELN 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 452 EYETTLNDLNSRIVQLNDKIES-----TDIVLKSKENELDNLKLSLKETLSISKDFNDSDLIGQINELISTKNNLQQKMD 526
Cdd:TIGR04523 177 LLEKEKLNIQKNIDKIKNKLLKlelllSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLN 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 527 DLNNLNDDNLKVVQDK---LIKNEETLKLKEAEIDSLNSEMDELKKQ-----ITSKDDEFKMWQSKYETVEDEAKIRNAE 598
Cdd:TIGR04523 257 QLKDEQNKIKKQLSEKqkeLEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEIQNQISQNNKI 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 599 VTELNGDIEDLKESKLHLEETITELENKVHKLENECELEKQKFEKTSLELESLQLKNSNIQaehiKELENLHENLISLQN 678
Cdd:TIGR04523 337 ISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLE----SKIQNQEKLNQQKDE 412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 679 ELKISSDRITTLTKENEVLMEQNNNNNNSVTLSNDQKDRDDEKIKSLGKQVQDWKEKYEAKEKDTNKrLKLLAEDLYIQY 758
Cdd:TIGR04523 413 QIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINK-IKQNLEQKQKEL 491
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 398365697 759 SSKHEQKVKLLKKGYENKyqNKFDQLNLENKTLSEEIEQLNkqlsSEREEKQELLKLLENEKK 821
Cdd:TIGR04523 492 KSKEKELKKLNEEKKELE--EKVKDLTKKISSLKEKIEKLE----SEKKEKESKISDLEDELN 548
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
598-821 |
1.37e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.22 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 598 EVTELNGDIEDLKESKLHleETITELENKVHKLENECELEK----QKFEKTSLELESLQLKNSNIQAEHIKELENLHENL 673
Cdd:PRK05771 32 HIEDLKEELSNERLRKLR--SLLTKLSEALDKLRSYLPKLNplreEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEI 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 674 ISLQNELKISSDRITTLTK------ENEVLMEQNNNNNNSVTLSNDQKDrDDEKIKSLGKQVqdwkEKYEAKEKDTnkrl 747
Cdd:PRK05771 110 SELENEIKELEQEIERLEPwgnfdlDLSLLLGFKYVSVFVGTVPEDKLE-ELKLESDVENVE----YISTDKGYVY---- 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 398365697 748 kllaedLYIQYSSKHEQKV-KLLKKgyenkyqNKFDQLNL-ENKTLSEEIEQLNKQLSSEREEKQELLKLLENEKK 821
Cdd:PRK05771 181 ------VVVVVLKELSDEVeEELKK-------LGFERLELeEEGTPSELIREIKEELEEIEKERESLLEELKELAK 243
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
298-817 |
1.48e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.37 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 298 QLDIRHDNFQIVAKRNEELTDQIYHLNQMLNSLISKN----ESLSFQYEKLNKNHQLLIDLTNE-----KLDKLNTErES 368
Cdd:COG5022 886 ELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENlefkTELIARLKKLLNNIDLEEGPSIEyvklpELNKLHEV-ES 964
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 369 DIAK--------VEKFKKRIKELNTEIKVLNSNQKILQEKFDASITEVNHIKG--EHENTVNTLQQNEKILNDKNVELEN 438
Cdd:COG5022 965 KLKEtseeyedlLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQlkELPVEVAELQSASKIISSESTELSI 1044
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 439 MKAELKGNNDKLSEYettlNDLNSRIVQLNDKIESTDIVLKSKENELDNLKLsLKETLSISKDFNDSDLIGQINELI--- 515
Cdd:COG5022 1045 LKPLQKLKGLLLLEN----NQLQARYKALKLRRENSLLDDKQLYQLESTENL-LKTINVKDLEVTNRNLVKPANVLQfiv 1119
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 516 --STKNNLQQKMDDLNNLNDDNLKVVQDKLIKNEETLKL--------KEAEIDSLNSEMDELKKQITSKDDEFKMWQSKY 585
Cdd:COG5022 1120 aqMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGlfweanleALPSPPPFAALSEKRLYQSALYDEKSKLSSSEV 1199
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 586 ETVEDEakIRNAEVTELNGDIEDLKESKLHLEETITELENKVHKLENecELEKQKFEKTSLELESLQLKNSNIQAEHIKE 665
Cdd:COG5022 1200 NDLKNE--LIALFSKIFSGWPRGDKLKKLISEGWVPTEYSTSLKGFN--NLNKKFDTPASMSNEKLLSLLNSIDNLLSSY 1275
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 666 LENLHENLISLQNELKISSDRI--TTLTKENEVLMEQNNNNNNSVTLSNDQK-----DRDDEKIKSLgKQVQDWKEKyea 738
Cdd:COG5022 1276 KLEEEVLPATINSLLQYINVGLfnALRTKASSLRWKSATEVNYNSEELDDWCrefeiSDVDEELEEL-IQAVKVLQL--- 1351
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 739 KEKDTNKrlklLAEDLYIQYSSKHEQKVKLLkkgyeNKYQNKFDQLNLENKTLSEEIEQLNKQ-LSSEREEKQELLKLLE 817
Cdd:COG5022 1352 LKDDLNK----LDELLDACYSLNPAEIQNLK-----SRYDPADKENNLPKEILKKIEALLIKQeLQLSLEGKDETEVHLS 1422
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
541-697 |
1.63e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 541 DKLIKNEETLKLKEAEIDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDEAKIRNAEvTELNGDIEDLKEsklhLEETI 620
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALE-AELAELPERLEE----LEERL 155
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 398365697 621 TELENKVHKLENECELEKQKFEKTSLELESLQLKNSNIQAEHIKELENLHENLISLQNELKISSDRITTLTKENEVL 697
Cdd:COG4717 156 EELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL 232
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
546-816 |
1.80e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 546 NEETLKLKEAEIDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDeakirnaeVTELNGDIEDLKEsklhLEETITELEN 625
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR--------LAEYSWDEIDVAS----AEREIAELEA 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 626 kvhklenecelEKQKFEKTSLELESLQLKNSNIQAEhIKELENLHENLISLQNELKISSDRITTLTKENEVLMEQNNNNN 705
Cdd:COG4913 676 -----------ELERLDASSDDLAALEEQLEELEAE-LEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLA 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 706 NSVTLSNDQKDRDDEKIKSLGKQVQDWkekYEAKEKDTNKRLKLLAEDLY---IQYSSKHEQKVKLLKKGYE--NKYQNK 780
Cdd:COG4913 744 RLELRALLEERFAAALGDAVERELREN---LEERIDALRARLNRAEEELEramRAFNREWPAETADLDADLEslPEYLAL 820
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 398365697 781 FDQL-------------NLENKTLSEEIEQLNKQLSSEREEKQELLKLL 816
Cdd:COG4913 821 LDRLeedglpeyeerfkELLNENSIEFVADLLSKLRRAIREIKERIDPL 869
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
352-494 |
2.27e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 352 IDLTNEKLDKLNTERESDIAKVEKFKKRIKELNTEIKVLNSNQKILQEKFDA----------------------SITE-- 407
Cdd:COG3883 39 LDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraralyrsggsvsyldvllgseSFSDfl 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 408 -----VNHIKGEHENTVNTLQQNEKILNDKNVELENMKAELKgnnDKLSEYETTLNDLNSRIVQLNDKIESTDIVLKSKE 482
Cdd:COG3883 119 drlsaLSKIADADADLLEELKADKAELEAKKAELEAKLAELE---ALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAE 195
|
170
....*....|..
gi 398365697 483 NELDNLKLSLKE 494
Cdd:COG3883 196 AQLAELEAELAA 207
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
540-752 |
3.20e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 540 QDKLIKNEETLKLKEAEIDSLNSEMDELKKQITSKDDEFKMWQSKYETVEDEAKIRNAEVTELNGDIEDLKESKLHLEET 619
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 620 ITELENKV-------HKLENECELE----KQKFEKTSLELESLQLKNSNIQAEhIKELENLHENLISLQNELKISSDRIT 688
Cdd:COG4942 99 LEAQKEELaellralYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQ-AEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 398365697 689 TLTKENEVLMEQnnnnnnsvtLSNDQKDRdDEKIKSLGKQVQDWKEKYEAKEKDTNKRLKLLAE 752
Cdd:COG4942 178 ALLAELEEERAA---------LEALKAER-QKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| PTZ00482 |
PTZ00482 |
membrane-attack complex/perforin (MACPF) Superfamily; Provisional |
25-185 |
3.23e-03 |
|
membrane-attack complex/perforin (MACPF) Superfamily; Provisional
Pssm-ID: 240433 [Multi-domain] Cd Length: 844 Bit Score: 41.00 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 25 NCSQERNPRTFnsepdssfnspGSSQFVIHPHEPLEKEKDEKQDLDRSIDYGR---SSALNNKNNANPLENIDINKMFDD 101
Cdd:PTZ00482 32 NYLQSTVEDIE-----------GPSAVDERTSGVLRDEGKHANILYNSILCNQkkhASFLNQRKSLDDDDDDEFDFLYED 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 102 KKSDSGTNDDKGGASTSDKHVLALNYSPIRVEMNSSEKRSDKNVDVDENDKEGSHINKKLKLQLES-------VPDLKQS 174
Cdd:PTZ00482 101 DEDDAGNATSGESSTDDDSLLELPDRDEDADTQANNDQTNDFDQDDSSNSQTDQGLKQSVNLSSAEklieekkGQTENTF 180
|
170
....*....|.
gi 398365697 175 STKDIINDKEE 185
Cdd:PTZ00482 181 KFYNFGNDGEE 191
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
340-485 |
3.30e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 340 QYEKLNKNHQLLIDLTNEKLDKLNTERESDIAKVEKFKKRIKELNTEIKVLNSNQKILQEKFDASIT--EVNHIKGEHEN 417
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYEALQKEIES 100
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 398365697 418 TVNTLQQNEKILNDKNVELENMKAELKGNNDKLSEYETTLNDLNSRIVQLNDKIESTDIVLKSKENEL 485
Cdd:COG1579 101 LKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
543-669 |
3.35e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 3.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 543 LIKNEETLKLKEAE------IDSLNSEMDELKKQITSKDDEfkMWQSKYETVEDEAKIRNAEVTELngdiedlkESKLHL 616
Cdd:PRK12704 24 VRKKIAEAKIKEAEeeakriLEEAKKEAEAIKKEALLEAKE--EIHKLRNEFEKELRERRNELQKL--------EKRLLQ 93
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 398365697 617 -EETITELENKVHKLENECELEKQKFEKTSLELESLQLKNSNIQAEHIKELENL 669
Cdd:PRK12704 94 kEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
630-821 |
3.92e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 3.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 630 LENECELEKQKFEKTSLELESLQLKNSNIQAEHIKELENLHENLISLQNELKISSDRITTLTKENEVLMEQNNNNNNSVT 709
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 710 LSNDQKDRDD--EKIKSLGKQVQDWKEKYEAKEKDTNKRLKLLAEdlyiqySSKHEQKVKLLKKGYENKYQNKFDQLNLE 787
Cdd:COG4717 127 LLPLYQELEAleAELAELPERLEELEERLEELRELEEELEELEAE------LAELQEELEELLEQLSLATEEELQDLAEE 200
|
170 180 190
....*....|....*....|....*....|....
gi 398365697 788 NKTLSEEIEQLNKQLSSEREEKQELLKLLENEKK 821
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
311-670 |
4.31e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 4.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 311 KRNEELTDQIYHLNQMLNSLISKNESLSFQYEKLNKNHQLLIDLtnEKLDKLNTERESDIAKVEKFKKRIKELN---TEI 387
Cdd:COG4717 88 EEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLY--QELEALEAELAELPERLEELEERLEELReleEEL 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 388 KVLNSNQKILQEKFDA---------------SITEVNHIKGEHENTVNTLQQNEKILNDKNVELENMKAELKGNND--KL 450
Cdd:COG4717 166 EELEAELAELQEELEElleqlslateeelqdLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALeeRL 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 451 SEYETTLNDLNSRIV------------------------------------QLNDKIESTDIVLKSKENELDNL------ 488
Cdd:COG4717 246 KEARLLLLIAAALLAllglggsllsliltiagvlflvlgllallflllareKASLGKEAEELQALPALEELEEEeleell 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 489 -KLSLKETLSISKDFNDSDLIGQINELISTKNNLQQKMDDLNNLNDDNlKVVQDKLIKNEETL--KLKEA-EIDSLNSEM 564
Cdd:COG4717 326 aALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIA-ALLAEAGVEDEEELraALEQAeEYQELKEEL 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 565 DELKKQITSKDDEFKMWQSKYETVEDEAKIRnaevtELNGDIEDLKESKLHLEETITELENKVHKLENECELE--KQKFE 642
Cdd:COG4717 405 EELEEQLEELLGELEELLEALDEEELEEELE-----ELEEELEELEEELEELREELAELEAELEQLEEDGELAelLQELE 479
|
410 420 430
....*....|....*....|....*....|....
gi 398365697 643 KTSLELESLQLKNSNIQA------EHIKELENLH 670
Cdd:COG4717 480 ELKAELRELAEEWAALKLalelleEAREEYREER 513
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
436-661 |
6.15e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.27 E-value: 6.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 436 LENMKAELKGNNDKLSEYETTLNDLNSRIVQLNDKIESTDIVLKSKENELDNLKLSLKETLSISKDFNDSDLigQINELI 515
Cdd:PRK01156 185 IDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYES--EIKTAE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 516 STKNNLQQKMDDLNNLNDDNLKVVQDKLIKNEETLK---LKEAEIDSLNSEMDELKKQITSKDDEFKMwQSKYETVEDEA 592
Cdd:PRK01156 263 SDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINdyfKYKNDIENKKQILSNIDAEINKYHAIIKK-LSVLQKDYNDY 341
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 398365697 593 KIRNAEVTELNGDIEDLKESKLHLEETITELENKVHKLENECELEKQKFEKTSLELESLQLKNSNIQAE 661
Cdd:PRK01156 342 IKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKE 410
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
483-819 |
6.49e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 6.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 483 NELDNLKLSLKETLSISKDFNDsdLIGQINELISTKNNLQQKMDDLNNLNDDNLKVVQdkLIKNEETLKLKEAEIDSLNS 562
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAE--LQEELEELEEELEELEAELEELREELEKLEKLLQ--LLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 563 EMDELKKQItskdDEFKMWQSKYETVEDEAKIRNAEVTELN--------GDIEDLKESKLHLEETITELENKVHKLENEC 634
Cdd:COG4717 147 RLEELEERL----EELRELEEELEELEAELAELQEELEELLeqlslateEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 635 ELEKQKFEKTSLELESLQLKNSNIQAEHIKELENLHENLISLQNELKISSDRITTLTKENE---VLMEQNNNNNNSVTLS 711
Cdd:COG4717 223 EELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLgllALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 712 NDQKDRDDEKIKSL-GKQVQDWKEKYEAKEKDTNKRLKLL---AEDLYIQYSSKHEQKVKLLKKGYENKYQNKFDQLNLE 787
Cdd:COG4717 303 EAEELQALPALEELeEEELEELLAALGLPPDLSPEELLELldrIEELQELLREAEELEEELQLEELEQEIAALLAEAGVE 382
|
330 340 350
....*....|....*....|....*....|..
gi 398365697 788 NKtlsEEIEQLNKQLsSEREEKQELLKLLENE 819
Cdd:COG4717 383 DE---EELRAALEQA-EEYQELKEELEELEEQ 410
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
313-643 |
7.75e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 39.70 E-value: 7.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 313 NEELTDQIYHLNQMLNSLISKNESLSFQYEKLNKNHQLLIDLTNEKldklnTERESDIAKVEKFKKRIK-ELNTEIKVLN 391
Cdd:pfam05483 341 NKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMEL-----QKKSSELEEMTKFKNNKEvELEELKKILA 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 392 SNQKILQEKFDASITeVNHIKGEHENTVNTLQQNEKILNDKNVELENMKAELKGNNDKLSEYETTLNDLNSRIVQLNDKI 471
Cdd:pfam05483 416 EDEKLLDEKKQFEKI-AEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHC 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 472 ESTDIVLKSKENELDNLKLSLKETLS--ISKDFNDSDLIGQINELISTKNNLQQKMDDLNNLNDDNLKVVQDKLIKNEET 549
Cdd:pfam05483 495 DKLLLENKELTQEASDMTLELKKHQEdiINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEEN 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 550 LKLKEAEIdslnsemdelkkqiTSKDDEFKMWQSKYETVEDEAKIRNAEVTELNGDIEDLKESKLHLEETITELENKVHK 629
Cdd:pfam05483 575 ARSIEYEV--------------LKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNK 640
|
330
....*....|....
gi 398365697 630 LENECELEKQKFEK 643
Cdd:pfam05483 641 LELELASAKQKFEE 654
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
659-821 |
7.96e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 7.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 659 QAEHIKELEnlhENLISLQNELKISSDRITTLTKENEVLMEQNNNNNNSVTLSNDQKDRDDEKIKSLGKQVQDWKEKYEA 738
Cdd:COG4942 18 QADAAAEAE---AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 739 KEKDTNKRLKLLAEDLYIQYSSKHEQKVKLLKKGYE----------------------NKYQNKFDQLNLENKTLSEEIE 796
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDfldavrrlqylkylaparreqaEELRADLAELAALRAELEAERA 174
|
170 180 190
....*....|....*....|....*....|....*
gi 398365697 797 QLN----------KQLSSEREEKQELLKLLENEKK 821
Cdd:COG4942 175 ELEallaeleeerAALEALKAERQKLLARLEKELA 209
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
310-525 |
8.53e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 8.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 310 AKRNEELTDQIYHLNQMLNSLISKNESLSFQYEKLNKNhqllIDLTNEKLDKLNTEresdiakvekfkkrIKELNTEIKV 389
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERR----IAALARRIRALEQE--------------LAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 390 LNSNQKILQEKFDAsitevnhIKGEHENTVNTLQQNEK------ILNDKNVE-----LENMKAELKGNNDKLSEYETTLN 458
Cdd:COG4942 88 LEKEIAELRAELEA-------QKEELAELLRALYRLGRqpplalLLSPEDFLdavrrLQYLKYLAPARREQAEELRADLA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 398365697 459 DLNSRIVQLNDKIESTDIVLKSKENELDNLKLSLKETLSISKDFND--SDLIGQINELISTKNNLQQKM 525
Cdd:COG4942 161 ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKelAELAAELAELQQEAEELEALI 229
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
234-623 |
9.40e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 39.50 E-value: 9.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 234 QQEEDFIKSNSNNVVNIDNAYKEKEDEENDITNSHINRLTPLYETSarESNSNEEGRNDYDDDNQLDIRHDNFQIVAKRN 313
Cdd:PLN02939 45 QQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKS--TSSDDDHNRASMQRDEAIAAIDNEQQTNSKDG 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 314 EELTD-QIYHLNQMLNSLiSKNESLsfqyekLNKNHQLLIDltneKLDKLNTERESDIAKVEKFKKRIKELNTEIKVL-- 390
Cdd:PLN02939 123 EQLSDfQLEDLVGMIQNA-EKNILL------LNQARLQALE----DLEKILTEKEALQGKINILEMRLSETDARIKLAaq 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 391 -NSNQKILQEKFDASITEVNHIKGEHENTVNTLQQNEKILNDKNVELENMKAELKgnnDKLSEYETTlndlNSRIVQLND 469
Cdd:PLN02939 192 eKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLK---AELIEVAET----EERVFKLEK 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 470 KIESTDIVLKSKENEL-----DNLKLS-LKETLSISKDFNDSDLIGqineliSTKNNLQQKMDDLNNLNDDNLKVvqDKL 543
Cdd:PLN02939 265 ERSLLDASLRELESKFivaqeDVSKLSpLQYDCWWEKVENLQDLLD------RATNQVEKAALVLDQNQDLRDKV--DKL 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365697 544 iknEETlkLKEAEIDSLNSE-MDELKKQITSKDDEFkmwQSKYETVEDEAKIRNAEVTELNGDIEDLKES--KLHLEETI 620
Cdd:PLN02939 337 ---EAS--LKEANVSKFSSYkVELLQQKLKLLEERL---QASDHEIHSYIQLYQESIKEFQDTLSKLKEEskKRSLEHPA 408
|
...
gi 398365697 621 TEL 623
Cdd:PLN02939 409 DDM 411
|
|
| |
