NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|6324581|ref|NP_014650|]
View 

Slg1p [Saccharomyces cerevisiae S288C]

Protein Classification

WSC domain-containing protein( domain architecture ID 10646084)

WSC (cell wall integrity and stress response component) domain-containing protein may bind carbohydrates; the domain contains up to eight conserved cysteine residues that may be involved in disulfide bridges

Gene Ontology:  GO:0005975|GO:0030246
PubMed:  30885320

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
WSC smart00321
present in yeast cell wall integrity and stress response component proteins; Domain present in ...
 22-110 3.24e-23

present in yeast cell wall integrity and stress response component proteins; Domain present in WSC proteins, polycystin and fungal exoglucanase


:

Pssm-ID: 214616 [Multi-domain]  Cd Length: 95  Bit Score: 92.53  E-value: 3.24e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324581      22 YEYVNCFS-SLPSDFSKADSYNW--QSSSHCNSECSAKGASYFALYNHSECYCGDTNP--SGSESTSSSCNTYCFGYSSE 96
Cdd:smart00321   2 ATYVGCYSdNSSRTLAAVSSYAYhnMSVEACSNFCFSAGYALAALENGNECYCGDSLPstSVSASDSSQCSTTCSGYPAE 81

                           90
                   ....*....|....
gi 6324581      97 MCGGEDAYSVYQLD 110
Cdd:smart00321  82 VCGGPNRLSVYVLA 95
 
Name Accession Description Interval E-value
WSC smart00321
present in yeast cell wall integrity and stress response component proteins; Domain present in ...
 22-110 3.24e-23

present in yeast cell wall integrity and stress response component proteins; Domain present in WSC proteins, polycystin and fungal exoglucanase


Pssm-ID: 214616 [Multi-domain]  Cd Length: 95  Bit Score: 92.53  E-value: 3.24e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324581      22 YEYVNCFS-SLPSDFSKADSYNW--QSSSHCNSECSAKGASYFALYNHSECYCGDTNP--SGSESTSSSCNTYCFGYSSE 96
Cdd:smart00321   2 ATYVGCYSdNSSRTLAAVSSYAYhnMSVEACSNFCFSAGYALAALENGNECYCGDSLPstSVSASDSSQCSTTCSGYPAE 81

                           90
                   ....*....|....
gi 6324581      97 MCGGEDAYSVYQLD 110
Cdd:smart00321  82 VCGGPNRLSVYVLA 95
WSC pfam01822
WSC domain; This domain is involved in carbohydrate binding.
 24-100 3.58e-15

WSC domain; This domain is involved in carbohydrate binding.


Pssm-ID: 460348  Cd Length: 82  Bit Score: 70.18  E-value: 3.58e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324581     24 YVNCFSSLPSD----FSKADSYNWQSSSHCNSECSAKGASYFALYNHSECYCGDT-NPSGSESTSSSCNTYCFGYSSEMC 98
Cdd:pfam01822   1 YLGCYSDGTGGrrllLGSSGDYDDMTPEKCIAFCSAAGYTYAGLEYGGECYCGNSlPSGSALADSSDCNTPCPGDSSQTC 80


                  ..
gi 6324581     99 GG 100
Cdd:pfam01822  81 GG 82
 
Name Accession Description Interval E-value
WSC smart00321
present in yeast cell wall integrity and stress response component proteins; Domain present in ...
 22-110 3.24e-23

present in yeast cell wall integrity and stress response component proteins; Domain present in WSC proteins, polycystin and fungal exoglucanase


Pssm-ID: 214616 [Multi-domain]  Cd Length: 95  Bit Score: 92.53  E-value: 3.24e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324581      22 YEYVNCFS-SLPSDFSKADSYNW--QSSSHCNSECSAKGASYFALYNHSECYCGDTNP--SGSESTSSSCNTYCFGYSSE 96
Cdd:smart00321   2 ATYVGCYSdNSSRTLAAVSSYAYhnMSVEACSNFCFSAGYALAALENGNECYCGDSLPstSVSASDSSQCSTTCSGYPAE 81

                           90
                   ....*....|....
gi 6324581      97 MCGGEDAYSVYQLD 110
Cdd:smart00321  82 VCGGPNRLSVYVLA 95
WSC pfam01822
WSC domain; This domain is involved in carbohydrate binding.
 24-100 3.58e-15

WSC domain; This domain is involved in carbohydrate binding.


Pssm-ID: 460348  Cd Length: 82  Bit Score: 70.18  E-value: 3.58e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324581     24 YVNCFSSLPSD----FSKADSYNWQSSSHCNSECSAKGASYFALYNHSECYCGDT-NPSGSESTSSSCNTYCFGYSSEMC 98
Cdd:pfam01822   1 YLGCYSDGTGGrrllLGSSGDYDDMTPEKCIAFCSAAGYTYAGLEYGGECYCGNSlPSGSALADSSDCNTPCPGDSSQTC 80


                  ..
gi 6324581     99 GG 100
Cdd:pfam01822  81 GG 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH