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Conserved domains on  [gi|6323754|ref|NP_013825|]
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Spg4p [Saccharomyces cerevisiae S288C]

Protein Classification

SPG4 domain-containing protein( domain architecture ID 13879691)

SPG4 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SPG4 pfam17325
Stationary phase protein 4; Saccharomyces cerevisiae respond and cope to starvation by ceasing ...
 3-114 7.30e-53

Stationary phase protein 4; Saccharomyces cerevisiae respond and cope to starvation by ceasing growth and entering a non-proliferating state referred to as stationary phase. Expression of SPG4 has been shown to be higher in stressed cells, and stationary phase cells compared to active cells. It is not required for growth on non-fermentable carbon sources.


:

Pssm-ID: 407431  Cd Length: 109  Bit Score: 161.44  E-value: 7.30e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323754      3 SFWDAFAVYDKKKHA-DPSVYGGNHNNTGDSKTQVMFSKEYRQPRTHQQENLQSMRRSSIGSQDSSDVEDVKEGRLPAev 81
Cdd:pfam17325   1 SIWDAFQVYNRKKHSsNPGMYGGNHSNTGDSKTQYLYSKEYREPKKKKKLDGAVMQAASTMSESSSDSLNVEEGQAPT-- 78

                          90       100       110
                  ....*....|....*....|....*....|...
gi 6323754     82 eiPKNVDISNMSQGEFLRLYESLRRGEPDNKVN 114
Cdd:pfam17325  79 --PNMVDISKLSQNEFKRLYESLRKGEPNNRVN 109
 
Name Accession Description Interval E-value
SPG4 pfam17325
Stationary phase protein 4; Saccharomyces cerevisiae respond and cope to starvation by ceasing ...
 3-114 7.30e-53

Stationary phase protein 4; Saccharomyces cerevisiae respond and cope to starvation by ceasing growth and entering a non-proliferating state referred to as stationary phase. Expression of SPG4 has been shown to be higher in stressed cells, and stationary phase cells compared to active cells. It is not required for growth on non-fermentable carbon sources.


Pssm-ID: 407431  Cd Length: 109  Bit Score: 161.44  E-value: 7.30e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323754      3 SFWDAFAVYDKKKHA-DPSVYGGNHNNTGDSKTQVMFSKEYRQPRTHQQENLQSMRRSSIGSQDSSDVEDVKEGRLPAev 81
Cdd:pfam17325   1 SIWDAFQVYNRKKHSsNPGMYGGNHSNTGDSKTQYLYSKEYREPKKKKKLDGAVMQAASTMSESSSDSLNVEEGQAPT-- 78

                          90       100       110
                  ....*....|....*....|....*....|...
gi 6323754     82 eiPKNVDISNMSQGEFLRLYESLRRGEPDNKVN 114
Cdd:pfam17325  79 --PNMVDISKLSQNEFKRLYESLRKGEPNNRVN 109
 
Name Accession Description Interval E-value
SPG4 pfam17325
Stationary phase protein 4; Saccharomyces cerevisiae respond and cope to starvation by ceasing ...
 3-114 7.30e-53

Stationary phase protein 4; Saccharomyces cerevisiae respond and cope to starvation by ceasing growth and entering a non-proliferating state referred to as stationary phase. Expression of SPG4 has been shown to be higher in stressed cells, and stationary phase cells compared to active cells. It is not required for growth on non-fermentable carbon sources.


Pssm-ID: 407431  Cd Length: 109  Bit Score: 161.44  E-value: 7.30e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323754      3 SFWDAFAVYDKKKHA-DPSVYGGNHNNTGDSKTQVMFSKEYRQPRTHQQENLQSMRRSSIGSQDSSDVEDVKEGRLPAev 81
Cdd:pfam17325   1 SIWDAFQVYNRKKHSsNPGMYGGNHSNTGDSKTQYLYSKEYREPKKKKKLDGAVMQAASTMSESSSDSLNVEEGQAPT-- 78

                          90       100       110
                  ....*....|....*....|....*....|...
gi 6323754     82 eiPKNVDISNMSQGEFLRLYESLRRGEPDNKVN 114
Cdd:pfam17325  79 --PNMVDISKLSQNEFKRLYESLRKGEPNNRVN 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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