|
Name |
Accession |
Description |
Interval |
E-value |
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
7-532 |
1.90e-22 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 101.21 E-value: 1.90e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPhNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 87 RFEEA------------------KRTYEEGLKHEANNpQLKEGLQNMEARLAERKFMNpfnmpNLYQKLESDPRTRTLLS 148
Cdd:TIGR00990 209 KYADAlldltasciidgfrneqsAQAVERLLKKFAES-KAKEILETKPENLPSVTFVG-----NYLQSFRPKPRPAGLED 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 149 DptyRELIEQLRNKPSDLGTKLQDPRIMTTLSvllgvdlgsmdeeeeiatpppppppkkeTKPEPMEEDLPENK---KQA 225
Cdd:TIGR00990 283 S---NELDEETGNGQLQLGLKSPESKADESYE----------------------------EAARAFEKALDLGKlgeKEA 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 226 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYItNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYrqiakaYA 304
Cdd:TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPrVTQSYI-KRASMNLELGDPDKAEEDFDKALKLNSEDPDIY------YH 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 305 RiGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYT 384
Cdd:TIGR00990 405 R-AQLHFIKGEFAQAGKDYQKSID--------------------------LDPDFIFSHIQLGVTQYKEGSIASSMATFR 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 385 EAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF------IKGYTRKAAAL-EAMKDYTKAMDVYQKALDL 457
Cdd:TIGR00990 458 RCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETkpmymnVLPLINKALALfQWKQDFIEAENLCEKALII 537
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5803181 458 DSSCKEAADGYQRCMMAQYNRHDSPEDVKRRAmadpEVQQIMSDPAMRLILEQMQKDPQALSEhlKNPVIAQKIQ 532
Cdd:TIGR00990 538 DPECDIAVATMAQLLLQQGDVDEALKLFERAA----ELARTEGELVQAISYAEATRTQIQVQE--DYPVLASKLQ 606
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
253-522 |
4.18e-22 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 95.46 E-value: 4.18e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 253 ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrt 332
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD-------AEALYNLGLAYLRLGRYEEALADYEQALE---- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 333 pdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQL 412
Cdd:COG0457 71 ----------------------LDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 413 ALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSScKEAADGYQRCMMAQYNRHDSPEDVKRRAMAD 492
Cdd:COG0457 129 AIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALA-ALLAAALGEAALALAAAEVLLALLLALEQAL 207
|
250 260 270
....*....|....*....|....*....|
gi 5803181 493 PEVQQIMSDPAMRLILEQMQKDPQALSEHL 522
Cdd:COG0457 208 RKKLAILTLAALAELLLLALALLLALRLAA 237
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
230-514 |
2.36e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 90.94 E-value: 2.36e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 230 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREdyrqiakAYARIGNS 309
Cdd:COG2956 47 ALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE-------ALRLLAEI 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 310 YFKEEKYKDAIhfynkslaehrtpdvlkkcQQAEKILKEQERLAYINPDLALEEknkgnecFQKGDYPQAMKHYTEAIKR 389
Cdd:COG2956 120 YEQEGDWEKAI-------------------EVLERLLKLGPENAHAYCELAELY-------LEQGDYDEAIEALEKALKL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 390 NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDssckeaadgyq 469
Cdd:COG2956 174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD----------- 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 5803181 470 rcmmaqynrhdsPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKD 514
Cdd:COG2956 243 ------------PSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
231-470 |
3.27e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 90.07 E-value: 3.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 231 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSY 310
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-------AEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 311 FKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN 390
Cdd:COG0457 87 QALGRYEEALEDYDKALE--------------------------LDPDDAEALYNLGLALLELGRYDEAIEAYERALELD 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 391 PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 470
Cdd:COG0457 141 PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
289-475 |
2.49e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 91.59 E-value: 2.49e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 289 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGN 368
Cdd:COG3914 41 LGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 369 ECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAM 448
Cdd:COG3914 121 LLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAI 200
|
170 180
....*....|....*....|....*..
gi 5803181 449 DVYQKALDLDSSCKEAADGYQRCMMAQ 475
Cdd:COG3914 201 AAYRRALELDPDNADAHSNLLFALRQA 227
|
|
| STI1 |
pfam17830 |
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ... |
482-536 |
1.12e-17 |
|
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.
Pssm-ID: 436075 Cd Length: 55 Bit Score: 76.83 E-value: 1.12e-17
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 5803181 482 PEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMD 536
Cdd:pfam17830 1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
|
|
| STI1 |
pfam17830 |
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ... |
130-184 |
3.26e-16 |
|
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.
Pssm-ID: 436075 Cd Length: 55 Bit Score: 72.59 E-value: 3.26e-16
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 5803181 130 MPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLG 184
Cdd:pfam17830 1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
295-465 |
4.41e-16 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 77.65 E-value: 4.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 295 DYRQIAKAYARIGNSYFKEEKY-------KDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKG 367
Cdd:COG4785 1 LYALALALLLALALAAAAASKAaillaalLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 368 NECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKA 447
Cdd:COG4785 81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160
|
170
....*....|....*...
gi 5803181 448 MDVYQKALDLDSSCKEAA 465
Cdd:COG4785 161 IADLEKALELDPNDPERA 178
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
265-489 |
5.37e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 74.64 E-value: 5.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 265 QAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaek 344
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDN-------AEALFNLGNLLLALGRLEEALAALRRALA---------------- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 345 ilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE 424
Cdd:COG3914 141 ----------LNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5803181 425 PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAdgyqrCMMAQYNRHDSPEDVKRRA 489
Cdd:COG3914 211 PDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELS-----PFALLYLPDDDPAELLALA 270
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
214-424 |
1.28e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.49 E-value: 1.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 214 MEEDLPENKKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENr 293
Cdd:COG3914 67 AAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDF- 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 294 edyrqiAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQK 373
Cdd:COG3914 146 ------AEAYLNLGEALRRLGRLEEAIAALRRALE--------------------------LDPDNAEALNNLGNALQDL 193
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 5803181 374 GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE 424
Cdd:COG3914 194 GRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALA 244
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1-108 |
4.52e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 71.95 E-value: 4.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 1 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80
Cdd:COG3914 75 LLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGE 154
|
90 100
....*....|....*....|....*...
gi 5803181 81 ALEFLNRFEEAKRTYEEGLKHEANNPQL 108
Cdd:COG3914 155 ALRRLGRLEEAIAALRRALELDPDNAEA 182
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
220-459 |
1.56e-12 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 70.01 E-value: 1.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 220 ENKKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPtNMTYITNQAAVYFEKGDYNKCRELCEKAIEVgrenREDYrqi 299
Cdd:TIGR00990 122 ERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALEL----DPDY--- 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 300 AKAYARIGNSYFKEEKYKDA---------IHFYNKSLAEHRTPDVLKKcqQAEKILKE-----QERLAYIN--------- 356
Cdd:TIGR00990 194 SKALNRRANAYDGLGKYADAlldltasciIDGFRNEQSAQAVERLLKK--FAESKAKEiletkPENLPSVTfvgnylqsf 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 357 ---PDLA-LEEKNKGNECFQKGDYPQAMKH--------YTEAI----------KRNPKDAKLYSNRAACYTKLLEFQLAL 414
Cdd:TIGR00990 272 rpkPRPAgLEDSNELDEETGNGQLQLGLKSpeskadesYEEAArafekaldlgKLGEKEAIALNLRGTFKCLKGKHLEAL 351
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 5803181 415 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 459
Cdd:TIGR00990 352 ADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS 396
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
5-121 |
5.19e-12 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 67.50 E-value: 5.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84
Cdd:PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82
|
90 100 110
....*....|....*....|....*....|....*..
gi 5803181 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAE 121
Cdd:PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
9-336 |
1.94e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 64.75 E-value: 1.94e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 9 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 88
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 89 EEAKRTYEEGLKHEANNPQLKEglqnmeaRLAErkfmnpfnmpnLYQKLESdprtrtllsdptYRELIEQLRnkpsdlgt 168
Cdd:COG2956 93 DRAEELLEKLLELDPDDAEALR-------LLAE-----------IYEQEGD------------WEKAIEVLE-------- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 169 KLqdprimttlsvllgvdlgsmdeeeeiatpppppppkketkpepmeedLPENKKQALKEKELGNDAYKKKDFDTALKHY 248
Cdd:COG2956 135 RL-----------------------------------------------LKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 249 DKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNsyfkeekYKDAIHFYNKSLA 328
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGD-------PEEALELLRKALE 240
|
....*...
gi 5803181 329 EHRTPDVL 336
Cdd:COG2956 241 LDPSDDLL 248
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
10-107 |
2.19e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 64.26 E-value: 2.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 89
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYE 93
|
90
....*....|....*...
gi 5803181 90 EAKRTYEEGLKHEANNPQ 107
Cdd:COG0457 94 EALEDYDKALELDPDDAE 111
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
7-106 |
2.39e-11 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 63.78 E-value: 2.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86
Cdd:COG4785 76 YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLG 155
|
90 100
....*....|....*....|
gi 5803181 87 RFEEAKRTYEEGLKHEANNP 106
Cdd:COG4785 156 RYELAIADLEKALELDPNDP 175
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
360-494 |
6.43e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.21 E-value: 6.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 360 ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 439
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 5803181 440 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHDSPEDVKRRAMADPE 494
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
18-123 |
2.47e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 61.18 E-value: 2.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEE 97
Cdd:COG0457 56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYER 135
|
90 100
....*....|....*....|....*.
gi 5803181 98 GLKHEANNPQLKEGLQNMEARLAERK 123
Cdd:COG0457 136 ALELDPDDADALYNLGIALEKLGRYE 161
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
224-393 |
3.91e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.89 E-value: 3.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 224 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREdyrqiakAY 303
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE-------AR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 304 ARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHY 383
Cdd:COG4783 76 LNLGLALLKAGDYDEALALLEKALK--------------------------LDPEHPEAYLRLARAYRALGRPDEAIAAL 129
|
170
....*....|
gi 5803181 384 TEAIKRNPKD 393
Cdd:COG4783 130 EKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
336-458 |
4.02e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.43 E-value: 4.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 336 LKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 415
Cdd:COG5010 30 ALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKE 109
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 5803181 416 DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 458
Cdd:COG5010 110 YYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
371-458 |
4.21e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 57.71 E-value: 4.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 371 FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV 450
Cdd:COG4235 28 LRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAA 107
|
....*...
gi 5803181 451 YQKALDLD 458
Cdd:COG4235 108 WQKLLALL 115
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
18-123 |
4.51e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.02 E-value: 4.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEE 97
Cdd:COG0457 90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169
|
90 100
....*....|....*....|....*.
gi 5803181 98 GLKHEANNPQLKEGLQNMEARLAERK 123
Cdd:COG0457 170 LEAAALAALLAAALGEAALALAAAEV 195
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
366-460 |
5.25e-10 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 61.34 E-value: 5.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 366 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYT 445
Cdd:PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87
|
90
....*....|....*
gi 5803181 446 KAMDVYQKALDLDSS 460
Cdd:PLN03088 88 TAKAALEKGASLAPG 102
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
371-460 |
6.80e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.95 E-value: 6.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 371 FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKdCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV 450
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81
|
90
....*....|
gi 5803181 451 YQKALDLDSS 460
Cdd:COG3063 82 LERALELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
265-425 |
1.75e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 56.35 E-value: 1.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 265 QAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaek 344
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDN-------PEAFALLGEILLQLGDLDEAIVLLHEALE---------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 345 ilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE 424
Cdd:COG4783 67 ----------LDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
.
gi 5803181 425 P 425
Cdd:COG4783 137 P 137
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
230-328 |
3.60e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.01 E-value: 3.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 230 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNS 309
Cdd:COG4235 22 LLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN-------PEALYLLGLA 94
|
90
....*....|....*....
gi 5803181 310 YFKEEKYKDAIHFYNKSLA 328
Cdd:COG4235 95 AFQQGDYAEAIAAWQKLLA 113
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
231-401 |
3.85e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 57.32 E-value: 3.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 231 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSY 310
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD-------ADALYNLGIAL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 311 FKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN 390
Cdd:COG0457 155 EKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALR 234
|
170
....*....|.
gi 5803181 391 PKDAKLYSNRA 401
Cdd:COG0457 235 LAALALYQYRA 245
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
2-123 |
4.58e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.81 E-value: 4.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 5803181 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAERK 123
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
18-100 |
9.09e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.58 E-value: 9.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEE 97
Cdd:COG5010 68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
...
gi 5803181 98 GLK 100
Cdd:COG5010 148 ALG 150
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
387-464 |
1.08e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 56.17 E-value: 1.08e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 5803181 387 IKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 464
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78
|
|
| STI1 |
smart00727 |
Heat shock chaperonin-binding motif; |
492-531 |
1.90e-08 |
|
Heat shock chaperonin-binding motif;
Pssm-ID: 128966 Cd Length: 41 Bit Score: 50.34 E-value: 1.90e-08
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 5803181 492 DPEVQQIMSDPAMRLILEQMQKDPQALSEHLK-NPVIAQKI 531
Cdd:smart00727 1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQeNPQLLQLI 41
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
18-105 |
2.33e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.89 E-value: 2.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEE 97
Cdd:COG4783 52 GDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131
|
....*...
gi 5803181 98 GLKHEANN 105
Cdd:COG4783 132 ALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
378-464 |
4.75e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.93 E-value: 4.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 378 QAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 457
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
....*..
gi 5803181 458 DSSCKEA 464
Cdd:COG4235 81 DPDNPEA 87
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
14-104 |
2.61e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 48.63 E-value: 2.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 14 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKA--YEdgcKTVDLKPDWGKGYSRKAAALEFLNRFEEA 91
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAiaLE---KALKLDPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|...
gi 5803181 92 KRTYEEGLKHEAN 104
Cdd:COG3063 79 LAYLERALELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
11-121 |
3.58e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.23 E-value: 3.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 90
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90 100 110
....*....|....*....|....*....|.
gi 5803181 91 AKRTYEEGLKHEANNPQLKEglqnMEARLAE 121
Cdd:COG4235 104 AIAAWQKLLALLPADAPARL----LEASIAE 130
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
264-328 |
6.79e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 47.00 E-value: 6.79e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 5803181 264 NQAAVYFEKGDYNKCRELCEKAIEVGRENR-EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 328
Cdd:pfam13424 8 NLAAVLRRLGRYDEALELLEKALEIARRLLgPDHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
215-308 |
7.21e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.19 E-value: 7.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 215 EEDLPENKKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE 294
Cdd:COG5010 44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN 123
|
90
....*....|....
gi 5803181 295 DYRQIAKAYARIGN 308
Cdd:COG5010 124 AYSNLAALLLSLGQ 137
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
235-328 |
8.24e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.09 E-value: 8.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 235 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELcEKAIEVGRENredyrqiAKAYARIGNSYFKEE 314
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNN-------AEALLNLAELLLELG 73
|
90
....*....|....
gi 5803181 315 KYKDAIHFYNKSLA 328
Cdd:COG3063 74 DYDEALAYLERALE 87
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
10-464 |
3.99e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 49.70 E-value: 3.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 89
Cdd:TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 90 EAKRTYEEGLKHEANNPQLKEGLQNMEARLaeRKFMNPFNMPNLYQK-LESDPRTRTLLSdptyrelIEQLRNKPSDlgt 168
Cdd:TIGR02917 279 DARETLQDALKSAPEYLPALLLAGASEYQL--GNLEQAYQYLNQILKyAPNSHQARRLLA-------SIQLRLGRVD--- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 169 klqdpRIMTTLSVLLGVDlgsmdeeeeiatpppppppkketkpepmeedlpENKKQALKEkeLGNDAYKKKDFDTALKHY 248
Cdd:TIGR02917 347 -----EAIATLSPALGLD---------------------------------PDDPAALSL--LGEAYLALGDFEKAAEYL 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 249 DKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG-----NSYFK--EEKYKD--- 318
Cdd:TIGR02917 387 AKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGqfdkaLAAAKklEKKQPDnas 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 319 ------AIHFYNKSLAEHRtpdvlkkcQQAEKILKeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPK 392
Cdd:TIGR02917 467 lhnllgAIYLGKGDLAKAR--------EAFEKALS-------IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK 531
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 5803181 393 DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 464
Cdd:TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEA 603
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
11-112 |
7.21e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 48.84 E-value: 7.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 90
Cdd:COG3914 153 GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEV 232
|
90 100
....*....|....*....|..
gi 5803181 91 AKRtYEEGLKHEANNPQLKEGL 112
Cdd:COG3914 233 YDR-FEELLAALARGPSELSPF 253
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
22-107 |
7.53e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 7.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 22 DALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
....*.
gi 5803181 102 EANNPQ 107
Cdd:COG4235 81 DPDNPE 86
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
231-487 |
9.11e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.54 E-value: 9.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 231 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSy 310
Cdd:TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE- 549
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 311 fkeekyKDAIHFYNKSLAEHRTPdvlkkcqqaekilkeqerlayINPDLALEEKNKGnecfqKGDYPQAMKHYTEAIKRN 390
Cdd:TIGR02917 550 ------EEAVAWLEKAAELNPQE---------------------IEPALALAQYYLG-----KGQLKKALAILNEAADAA 597
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 391 PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAadgyQR 470
Cdd:TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA----QI 673
|
250
....*....|....*..
gi 5803181 471 CMMAQYNRHDSPEDVKR 487
Cdd:TIGR02917 674 GLAQLLLAAKRTESAKK 690
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
366-464 |
9.39e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 47.42 E-value: 9.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 366 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYT 445
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90
....*....|....*....
gi 5803181 446 KAMDVYQKALDLDSSCKEA 464
Cdd:COG2956 94 RAEELLEKLLELDPDDAEA 112
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
367-407 |
2.05e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 41.69 E-value: 2.05e-05
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 5803181 367 GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 407
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
244-402 |
2.71e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.84 E-value: 2.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 244 ALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSyfkeekykdaihfy 323
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDT-------------- 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 5803181 324 nkslaehrtpdvlkkcQQAEKILKEQERLAYINPDLALeekNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAA 402
Cdd:COG4235 68 ----------------EEAEELLERALALDPDNPEALY---LLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
230-358 |
3.87e-05 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 45.93 E-value: 3.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 230 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGrenredyRQIAKAYARIGNS 309
Cdd:PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-------PSLAKAYLRKGTA 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 5803181 310 YFKEEKYKDAIHFYNK--SLA--EHRTPDVLKKCQqaEKILKEQERLAYINPD 358
Cdd:PLN03088 80 CMKLEEYQTAKAALEKgaSLApgDSRFTKLIKECD--EKIAEEEKDLVQPVPS 130
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
230-388 |
3.90e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 44.91 E-value: 3.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 230 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNS 309
Cdd:COG4785 78 ERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY-------AYAYLNRGIA 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 310 YFKEEKYKDAIHFYNKSLAEHRTPDvlkkcqqaEKILKEQERLAYINPDLALEEKNK--GNECFQKGDYPQAMKHYTEAI 387
Cdd:COG4785 151 LYYLGRYELAIADLEKALELDPNDP--------ERALWLYLAERKLDPEKALALLLEdwATAYLLQGDTEEARELFKLAL 222
|
.
gi 5803181 388 K 388
Cdd:COG4785 223 A 223
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
300-425 |
4.06e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.46 E-value: 4.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 300 AKAYARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQA 379
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALR--------------------------LDPDNADALLDLAEALLAAGDTEEA 70
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 5803181 380 MKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 425
Cdd:COG4235 71 EELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
265-425 |
6.66e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.41 E-value: 6.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 265 QAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaek 344
Cdd:COG5010 19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ---------------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 345 ilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE 424
Cdd:COG5010 83 ----------LDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
.
gi 5803181 425 P 425
Cdd:COG5010 153 P 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
230-460 |
1.53e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 44.69 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 230 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 309
Cdd:TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 310 yfkeekyKDAIHFYNKSLAEHRTP----DVLKKCQQA----EKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMK 381
Cdd:TIGR02917 584 -------KKALAILNEAADAAPDSpeawLMLGRAQLAagdlNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT 656
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 382 HYTEAIKRNPKDAKLysnraacytKLLEFQLAL--KDCEECIQLEPTFIKGYTRKAAALE-------AMKDYTKAMDVYQ 452
Cdd:TIGR02917 657 SLKRALELKPDNTEA---------QIGLAQLLLaaKRTESAKKIAKSLQKQHPKAALGFElegdlylRQKDYPAAIQAYR 727
|
....*...
gi 5803181 453 KALDLDSS 460
Cdd:TIGR02917 728 KALKRAPS 735
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
394-427 |
2.29e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.56 E-value: 2.29e-04
10 20 30
....*....|....*....|....*....|....
gi 5803181 394 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 427
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
11-52 |
3.83e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.22 E-value: 3.83e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 5803181 11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG 52
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| lysogeny_AimR |
NF038310 |
AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR ... |
265-390 |
3.98e-04 |
|
AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR (arbitrium receptor), is a DNA-binding phage regulatory protein that acts as a receptor for a 6-amino acid signaling peptide cleaved from the C-terminus of AimP. AimR controls expression of AimX, the third member of the quorum sensing-like arbitrium system and an inhibitor of phage lysogeny.
Pssm-ID: 468467 Cd Length: 363 Bit Score: 42.90 E-value: 3.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 265 QAAVYFEKGDYNKCRELCEKAIEvgrENREDYRQIAKAYARIGNSYFKEEkYKDAIHFYNKSLaehrtpDVLKKCQQAEK 344
Cdd:NF038310 193 LAYAYLRRNELEEAREYCNEIIN---SANNFPLLKATAYYCLGESYIFED-YEKALKYLEKSL------ELLKKIKNKKI 262
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 5803181 345 ILKEQE---RLAYI----NPDLALEEKNKGNE----CFQKGDYPQAMKHYTEAIKRN 390
Cdd:NF038310 263 ERKYKAflnTLAFLkiywNKDLDKIDILDPAEkaflEIKKGNKEKAIKILEELEKEN 319
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
365-425 |
4.23e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 42.62 E-value: 4.23e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 5803181 365 NKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 425
Cdd:cd24142 5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP 65
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
5-70 |
4.71e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 42.23 E-value: 4.71e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 5803181 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
234-407 |
4.79e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.82 E-value: 4.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 234 DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKE 313
Cdd:COG4785 48 LAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL-------AEAYNNRGLAYLLL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 314 EKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD 393
Cdd:COG4785 121 GDYDAALEDFDRALE--------------------------LDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPND 174
|
170
....*....|....
gi 5803181 394 AKLYSNRAACYTKL 407
Cdd:COG4785 175 PERALWLYLAERKL 188
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
230-302 |
5.88e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.99 E-value: 5.88e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 5803181 230 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY---RQIAKA 302
Cdd:COG4235 56 DLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARlleASIAEA 131
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
364-393 |
6.24e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.40 E-value: 6.24e-04
10 20 30
....*....|....*....|....*....|
gi 5803181 364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKD 393
Cdd:pfam00515 5 YNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
18-122 |
8.17e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 41.15 E-value: 8.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEE 97
Cdd:COG0457 124 GRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
|
90 100
....*....|....*....|....*
gi 5803181 98 GLKHEANNPQLKEGLQNMEARLAER 122
Cdd:COG0457 204 EQALRKKLAILTLAALAELLLLALA 228
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
300-328 |
8.64e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.04 E-value: 8.64e-04
10 20
....*....|....*....|....*....
gi 5803181 300 AKAYARIGNSYFKEEKYKDAIHFYNKSLA 328
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALE 29
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
364-393 |
9.63e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.66 E-value: 9.63e-04
10 20 30
....*....|....*....|....*....|
gi 5803181 364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKD 393
Cdd:smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
240-460 |
1.13e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.99 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 240 DFDTALKHYDKAKELDptnmtYITNQAAVYFEK-----GDYNKCRELCEKAIEVGRENRedyrqiAKAYARIGNSYFKEE 314
Cdd:TIGR02917 71 DYAAAEKELRKALSLG-----YPKNQVLPLLARayllqGKFQQVLDELPGKTLLDDEGA------AELLALRGLAYLGLG 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 315 KYKDAIHFYNKSLA--EHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKN------KGNECFQKGDYPQAMKHYTEA 386
Cdd:TIGR02917 140 QLELAQKSYEQALAidPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNvdalllKGDLLLSLGNIELALAAYRKA 219
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 5803181 387 IKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 460
Cdd:TIGR02917 220 IALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE 293
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
300-327 |
1.38e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.24 E-value: 1.38e-03
10 20
....*....|....*....|....*...
gi 5803181 300 AKAYARIGNSYFKEEKYKDAIHFYNKSL 327
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
238-460 |
1.57e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.22 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 238 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYnkcrelcEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 317
Cdd:TIGR02917 648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT-------ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYP 720
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 318 DAIHFYNKSLAEHRTPD-------VLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN 390
Cdd:TIGR02917 721 AAIQAYRKALKRAPSSQnaiklhrALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKA 800
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 391 PKDAKLYSNRAACYTKLLEFQlALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 460
Cdd:TIGR02917 801 PDNAVVLNNLAWLYLELKDPR-ALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
371-456 |
1.90e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.05 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 371 FQKGDYPQAMKHYTEAIKRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK---GYTRKAAALEAMKDY 444
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDY 83
|
90
....*....|..
gi 5803181 445 TKAMDVYQKALD 456
Cdd:COG1729 84 DKARATLEELIK 95
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
268-392 |
2.01e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 268 VYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKEEKYKDAIHFynkslaehrtpdvlkkcqqaekilk 347
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDN-------ADALNNLGLLLLEQGRYDEAIAL------------------------- 48
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 5803181 348 eqERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPK 392
Cdd:COG3063 49 --EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
393-523 |
2.60e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 38.25 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 393 DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 472
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 5803181 473 MAQyNRHDSPEDVKRRAMA----DPEVQQIMSDpamrlILEQMQKDPQALSEHLK 523
Cdd:COG4783 83 LKA-GDYDEALALLEKALKldpeHPEAYLRLAR-----AYRALGRPDEAIAALEK 131
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
15-309 |
2.98e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 40.45 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 15 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRT 94
Cdd:TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 95 YEEglkHEANNPQLKEGlQNMEARLAERKFMNPFNMPNLYQKLESDPRTRTLLSDPTYrelieQLRNKPSDLGTKL---- 170
Cdd:TIGR02917 692 AKS---LQKQHPKAALG-FELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRA-----LLASGNTAEAVKTleaw 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 171 --QDPRIMTTLSVLLGVDLGSMDeeeeiatpppppppkketkpepmeEDLPENKKQALKEKE------LGNDA--YKKKD 240
Cdd:TIGR02917 763 lkTHPNDAVLRTALAELYLAQKD------------------------YDKAIKHYQTVVKKApdnavvLNNLAwlYLELK 818
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 5803181 241 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 309
Cdd:TIGR02917 819 DPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRK 887
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
367-454 |
3.09e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 39.48 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 367 GNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG-----YTRkaaALEA 440
Cdd:COG4700 96 ADALLELGRYDEAIELYEEALTGIfADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKSSdahllYAR---ALEA 172
|
90
....*....|....
gi 5803181 441 MKDYTKAMDVYQKA 454
Cdd:COG4700 173 LGDLEAAEAELEAL 186
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
394-427 |
3.39e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 3.39e-03
10 20 30
....*....|....*....|....*....|....
gi 5803181 394 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 427
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
231-258 |
3.70e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.09 E-value: 3.70e-03
10 20
....*....|....*....|....*...
gi 5803181 231 LGNDAYKKKDFDTALKHYDKAKELDPTN 258
Cdd:pfam00515 7 LGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
230-288 |
4.04e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 39.53 E-value: 4.04e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 5803181 230 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 288
Cdd:cd24142 5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIEL 63
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
385-493 |
5.28e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.02 E-value: 5.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 385 EAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 464
Cdd:COG5010 45 AGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA 124
|
90 100
....*....|....*....|....*....
gi 5803181 465 ADGYQRCMMAQYNRHDSPEDVKRRAMADP 493
Cdd:COG5010 125 YSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
7-37 |
5.83e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.73 E-value: 5.83e-03
10 20 30
....*....|....*....|....*....|.
gi 5803181 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN 37
Cdd:smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
7-37 |
6.95e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 34.32 E-value: 6.95e-03
10 20 30
....*....|....*....|....*....|.
gi 5803181 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN 37
Cdd:pfam00515 4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
18-69 |
8.70e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 37.25 E-value: 8.70e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 5803181 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 69
Cdd:COG5010 102 GDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
235-459 |
9.15e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 38.35 E-value: 9.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 235 AYKKKDFDTALKHYDKAKELDPTN--MTYITnQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN---- 308
Cdd:COG3071 60 AQALGDYERRDEYLAQALELAPEAelAVLLT-RAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDweel 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 309 ----------SYFKEEKYK------------------DAIHFYNKSL--AEHRTPDV----------LKKCQQAEKILKE 348
Cdd:COG3071 139 lellpalrkhKALSAEEAQalerraylgllrqaardaEALKALWKALprAERRDPELaaayaraliaLGDHDEAERLLRE 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 349 ------QERLAYINPDLALeeknkgnecfqkGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 422
Cdd:COG3071 219 alkrqwDPRLVRLYGRLQG------------GDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALA 286
|
250 260 270
....*....|....*....|....*....|....*..
gi 5803181 423 LEPTfIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 459
Cdd:COG3071 287 LRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
234-330 |
9.72e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.12 E-value: 9.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5803181 234 DAYKKKDFDTALKHYDKAKELDPTNmTYITN----QAAVYFEKGDYNKCRELCEKAIevgrENREDYRQIAKAYARIGNS 309
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNS-PLAPDalywLGEAYYALGDYDEAAEAFEKLL----KRYPDSPKAPDALLKLGLS 76
|
90 100
....*....|....*....|.
gi 5803181 310 YFKEEKYKDAIHFYNKSLAEH 330
Cdd:COG1729 77 YLELGDYDKARATLEELIKKY 97
|
|
| |
