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Conserved domains on  [gi|2172664202|ref|NP_001386121|]
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transmembrane protein 234 precursor [Rattus norvegicus]

Protein Classification

TMEM234 domain-containing protein( domain architecture ID 10566314)

TMEM234 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TMEM234 pfam10639
Putative transmembrane family 234; TMEM234 is a family of putative inner membrane proteins. ...
 18-126 2.99e-41

Putative transmembrane family 234; TMEM234 is a family of putative inner membrane proteins. Many bacterial members are annotated as putative L-Ara4N-phosphoundecaprenol flippase subunit ArnE, and as inner membrane proteins. They may be transporters of the multi-drug-resistant superfamily.


:

Pssm-ID: 371174  Cd Length: 113  Bit Score: 132.79  E-value: 2.99e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172664202  18 WGGTQPLLKRASSGLQQVHERTwarQLVGEMKALFLNTEYLMPFLLNQSGSLLYYLTLASTDLTLAVPICNSLAIVFTLI 97
Cdd:pfam10639   8 WGITNPLLKRGSKGLENVKSPL---QFLLEFKFLFLRWKYLIPFLLNQSGSVVFFYTLGSTDLSLAVPIANSLSFVFTVL 84

                          90       100
                  ....*....|....*....|....*....
gi 2172664202  98 VGKVLGEDVGGKGAAAGMVLAIAGVTLCV 126
Cdd:pfam10639  85 TGWLLGEKVLGKKTYLGMGLVVAGTALCV 113
 
Name Accession Description Interval E-value
TMEM234 pfam10639
Putative transmembrane family 234; TMEM234 is a family of putative inner membrane proteins. ...
 18-126 2.99e-41

Putative transmembrane family 234; TMEM234 is a family of putative inner membrane proteins. Many bacterial members are annotated as putative L-Ara4N-phosphoundecaprenol flippase subunit ArnE, and as inner membrane proteins. They may be transporters of the multi-drug-resistant superfamily.


Pssm-ID: 371174  Cd Length: 113  Bit Score: 132.79  E-value: 2.99e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172664202  18 WGGTQPLLKRASSGLQQVHERTwarQLVGEMKALFLNTEYLMPFLLNQSGSLLYYLTLASTDLTLAVPICNSLAIVFTLI 97
Cdd:pfam10639   8 WGITNPLLKRGSKGLENVKSPL---QFLLEFKFLFLRWKYLIPFLLNQSGSVVFFYTLGSTDLSLAVPIANSLSFVFTVL 84

                          90       100
                  ....*....|....*....|....*....
gi 2172664202  98 VGKVLGEDVGGKGAAAGMVLAIAGVTLCV 126
Cdd:pfam10639  85 TGWLLGEKVLGKKTYLGMGLVVAGTALCV 113
 
Name Accession Description Interval E-value
TMEM234 pfam10639
Putative transmembrane family 234; TMEM234 is a family of putative inner membrane proteins. ...
 18-126 2.99e-41

Putative transmembrane family 234; TMEM234 is a family of putative inner membrane proteins. Many bacterial members are annotated as putative L-Ara4N-phosphoundecaprenol flippase subunit ArnE, and as inner membrane proteins. They may be transporters of the multi-drug-resistant superfamily.


Pssm-ID: 371174  Cd Length: 113  Bit Score: 132.79  E-value: 2.99e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2172664202  18 WGGTQPLLKRASSGLQQVHERTwarQLVGEMKALFLNTEYLMPFLLNQSGSLLYYLTLASTDLTLAVPICNSLAIVFTLI 97
Cdd:pfam10639   8 WGITNPLLKRGSKGLENVKSPL---QFLLEFKFLFLRWKYLIPFLLNQSGSVVFFYTLGSTDLSLAVPIANSLSFVFTVL 84

                          90       100
                  ....*....|....*....|....*....
gi 2172664202  98 VGKVLGEDVGGKGAAAGMVLAIAGVTLCV 126
Cdd:pfam10639  85 TGWLLGEKVLGKKTYLGMGLVVAGTALCV 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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