NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2171360876|ref|NP_001385917|]
View 

zinc finger SWIM domain-containing protein 1 [Rattus norvegicus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF5909 super family cl44720
Domain of unknown function (DUF5909); This is the C-terminal region of the Zinc finger SWIM ...
 381-455 8.28e-34

Domain of unknown function (DUF5909); This is the C-terminal region of the Zinc finger SWIM domain-containing protein 1, whose function is currently unknown.


The actual alignment was detected with superfamily member pfam19286:

Pssm-ID: 466028  Cd Length: 84  Bit Score: 121.86  E-value: 8.28e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2171360876 381 DMLQTQWTSGC---------ATSLDSILGSKWSASLDKHLAVTLLTEEVGRLLEHCSKEEFERRYSTLRELADSWIGPYE 451
Cdd:pfam19286   1 EMLPRQWQKGSdhlqpgenvADDLLEILKSDWDESLDKHLAVSDLTAEISRLLTQCSGEEFERRYSTLRELADSWIGPYE 80


                  ....
gi 2171360876 452 QVQL 455
Cdd:pfam19286  81 QVKL 84
SWIM pfam04434
SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is ...
 349-375 1.54e-05

SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.


:

Pssm-ID: 309540  Cd Length: 38  Bit Score: 41.63  E-value: 1.54e-05
                          10        20
                  ....*....|....*....|....*..
gi 2171360876 349 PASCSCYFNQAFHLPCRHILAMLSARQ 375
Cdd:pfam04434  12 KASCSCPDFQLNGIPCKHALAVLLALG 38
 
Name Accession Description Interval E-value
DUF5909 pfam19286
Domain of unknown function (DUF5909); This is the C-terminal region of the Zinc finger SWIM ...
 381-455 8.28e-34

Domain of unknown function (DUF5909); This is the C-terminal region of the Zinc finger SWIM domain-containing protein 1, whose function is currently unknown.


Pssm-ID: 466028  Cd Length: 84  Bit Score: 121.86  E-value: 8.28e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2171360876 381 DMLQTQWTSGC---------ATSLDSILGSKWSASLDKHLAVTLLTEEVGRLLEHCSKEEFERRYSTLRELADSWIGPYE 451
Cdd:pfam19286   1 EMLPRQWQKGSdhlqpgenvADDLLEILKSDWDESLDKHLAVSDLTAEISRLLTQCSGEEFERRYSTLRELADSWIGPYE 80


                  ....
gi 2171360876 452 QVQL 455
Cdd:pfam19286  81 QVKL 84
SWIM pfam04434
SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is ...
 349-375 1.54e-05

SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.


Pssm-ID: 309540  Cd Length: 38  Bit Score: 41.63  E-value: 1.54e-05
                          10        20
                  ....*....|....*....|....*..
gi 2171360876 349 PASCSCYFNQAFHLPCRHILAMLSARQ 375
Cdd:pfam04434  12 KASCSCPDFQLNGIPCKHALAVLLALG 38
 
Name Accession Description Interval E-value
DUF5909 pfam19286
Domain of unknown function (DUF5909); This is the C-terminal region of the Zinc finger SWIM ...
 381-455 8.28e-34

Domain of unknown function (DUF5909); This is the C-terminal region of the Zinc finger SWIM domain-containing protein 1, whose function is currently unknown.


Pssm-ID: 466028  Cd Length: 84  Bit Score: 121.86  E-value: 8.28e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2171360876 381 DMLQTQWTSGC---------ATSLDSILGSKWSASLDKHLAVTLLTEEVGRLLEHCSKEEFERRYSTLRELADSWIGPYE 451
Cdd:pfam19286   1 EMLPRQWQKGSdhlqpgenvADDLLEILKSDWDESLDKHLAVSDLTAEISRLLTQCSGEEFERRYSTLRELADSWIGPYE 80


                  ....
gi 2171360876 452 QVQL 455
Cdd:pfam19286  81 QVKL 84
SWIM pfam04434
SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is ...
 349-375 1.54e-05

SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.


Pssm-ID: 309540  Cd Length: 38  Bit Score: 41.63  E-value: 1.54e-05
                          10        20
                  ....*....|....*....|....*..
gi 2171360876 349 PASCSCYFNQAFHLPCRHILAMLSARQ 375
Cdd:pfam04434  12 KASCSCPDFQLNGIPCKHALAVLLALG 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH