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neuroblast differentiation-associated protein AHNAK isoform 1 [Rattus norvegicus]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
TamB super family
cl34519 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
4888-5418
2.82e-09
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
COG2911 :Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 63.91
E-value: 2.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4888 DVDISSP GV NV EA PDIHVKA pkfkvpgve AAGPKIE G N L KGPKVQANLDTPDINIQGPEAKIKT P SFSV S A p QVSIPDVN 4967
Cdd:COG2911 6 GLTLRDD GV DL EA DRLRLDW --------- SPLALLR G R L CIDELALSASLDGDRLRLDNLDLDA P EGAL S G - LLDLVQAT 75
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4968 VKLK G PNIKGD - VPSVG L EGPDVD L QG p E G KIKFPKFSL pkisapgvkmgggst EIHAQM P S L e A G L STSDIKFE G pgv S 5046
Cdd:COG2911 76 LDAE G LDLASS a LDDLD L RSGGNR L TL - S G NLSAASLDG --------------- DLDLDA P D L - A D L AALLPGLA G --- S 135
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5047 L K G P G V D LP S V D LSL p KVSGPD LDL NL KG PSLKGDV A A S ------------------ SPSMK L H AP G - L DMKG ------- 5100
Cdd:COG2911 136 L S G D G L D SL S L D ADG - TLAQHR LDL DA KG EPASLSL A L S ggldrddggtlsrldfln TGRWG L A AP A t L SYDD grvtlgp 214
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5101 -- V AG KVQIGAD G VKVSGT D ATAA L S --------- VGAP D VT L K G S s L Q GD LAV SG DIKC P KVSV --- GTPEVSVEALE G 5166
Cdd:COG2911 215 lc L AG GGSLCLS G TLGGTL D LQLR L K nlplallnp FLPD D LG L S G T - L N GD ADL SG GLAN P QGDA sls LSGDLTLNDGL G 293
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5167 G VK L P -- QMK L p QFGISTPGSD LD INIK G PQV c G E L QG SG T --------------- DVN L KGPQISA ----- PG MDFN L E 5224
Cdd:COG2911 294 G LP L G lg DLT L - NARLANGRLT LD LTLD G GGL - G T L SL SG S vpladglppsapldg NLR L DNLDLAL lnpll PG VLER L S 371
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5225 G p KVR G S L GAT G E L KG P SIG G glpgi SIQGPE G N L QM P G ----------- IKAS G CDVKVSSGQISGP ei K G D L KG SG - I 5292
Cdd:COG2911 372 G - QLN G D L RLS G T L AA P QLN G ----- QLTLDD G R L KL P A lgvrltdinlr LRFD G DRLTLDGLTADSG -- G G T L TL SG t V 443
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5293 G L H G AVP -- DL SV KG PSFN --------- MA S PESDFGVSLK GP KVK G G V D V SGG - VSV P DINLGEGHMN ---- V KGFGG E 5356
Cdd:COG2911 444 D L D G LSW pa DL TL KG DNLR vlnppdyta TV S GDLTLTGTPD GP TLS G N V T V PRA r ITL P ELPPSAVSLS ddvv V VNRPP E 523
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2168985312 5357 WKGPQVSSS -- VN LD TTKLV G N - LHFS G PKIEGDV k GG QIG L Q G PGLSVSGPQ G HLESGS G KVTF 5418
Cdd:COG2911 524 PVPEEEAAG lp LD LD LNVNL G D d VRVR G FGLDARL - GG DLR L T G TPGGAPRLT G EINLVR G RYNA 587
TamB super family
cl34519 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
2612-2940
1.47e-07
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
COG2911 :Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 58.13
E-value: 1.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2612 M N IKTPKISMPDLN L N L KGPNVK G DV dvsip NVEGD L Q G PS L DIK S pk L DVNA P DI D IHG P EGK L K G pklkmp DMHVNMP 2691
Cdd:COG2911 288 L N DGLGGLPLGLGD L T L NARLAN G RL ----- TLDLT L D G GG L GTL S -- L SGSV P LA D GLP P SAP L D G ------ NLRLDNL 354
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2692 KISM ----- P DIDLN L K G s KVK GD VDI SG ---- P K L E G DIKTPKVDV K G P E L DISASKV N IDAKGKKS R FK L PKFNFSGS 2762
Cdd:COG2911 355 DLAL lnpll P GVLER L S G - QLN GD LRL SG tlaa P Q L N G QLTLDDGRL K L P A L GVRLTDI N LRLRFDGD R LT L DGLTADSG 433
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2763 KVQ ------------ TPEV D VK LK -------- K PD VDV T A - PKVDINAP -- EVEVQ G K V KG P K -- FKM P F L SI S SPKV S M 2817
Cdd:COG2911 434 GGT ltlsgtvdldgl SWPA D LT LK gdnlrvln P PD YTA T V s GDLTLTGT pd GPTLS G N V TV P R ar ITL P E L PP S AVSL S D 513
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2818 PD V EL N LKGPK V KG E LD A TV P n L EG D fkspk VDIKAP - DV QLNAPDV D V hgq EWNLKMH kmkmpkfs VS G VKAEG P dvav 2896
Cdd:COG2911 514 DV V VV N RPPEP V PE E EA A GL P - L DL D ----- LNVNLG d DV RVRGFGL D A --- RLGGDLR -------- LT G TPGGA P ---- 572
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 2168985312 2897 d LPK G D IN IEGPSM N IE G PE L NV E cp E GS LK -- GP KF k M P EMN I K A 2940
Cdd:COG2911 573 - RLT G E IN LVRGRY N AY G QR L TI E -- R GS IT fn GP PL - D P YLD I E A 614
AsmA super family
cl34531 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
3922-4342
1.14e-04
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
COG2982 :Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 48.50
E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 3922 DL DV S - G P KVDIDVP DV NIEG PD AKLKG P KFKMPEM nikapkismpdlhlkgpkikg DV D VS L PKV - E GE IK V P E VDIK G 3999
Cdd:COG2982 55 DL SL S l F P WPGVTLG DV TLSN PD GFGGP P LASAERL --------------------- EL D LA L LPL l S GE LE V D E ITLD G 113
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4000 P K vdi DVPDV D VQ G - PD W HLKMPKMKMP -------- KFSMPGFKAEGPEVDVSLPKADL D V T GPKVDIDVPDVNVG GP - D 4069
Cdd:COG2982 114 P V --- INLER D AD G r AN W DFLLAAAAAA adaeasaw SLDIGRLEITDGRLVYDDAASGA D L T LDDLNLTLSGPSLD GP f R 190
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4070 VKVK G p KFKMPEMNIKA p KI SMP ------ DFD L H L KGPKVKGDV D ASLPKMEGP G - VDIDS P D ------- VNIEG PE G -- 4133
Cdd:COG2982 191 LSGS G - RLNGQPLTLDG - KI GGL lalgpy PLK L D L RSGDLRLSL D GTVDLAGLD G q LALSG P S lrdllal LGVTL PE P gp 268
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4134 - K L K G pkfkmp DMHIKAPKISMP D FDLN L KG S KVK GD VDLSL --- P KVE GDL KGPEI D I -------- ECPEGKLKGPKFK 4201
Cdd:COG2982 269 f S L S G ------ RLTADGDRLRLE D LKGT L GD S DLT GD LSVTG gdr P ALT GDL ASDRL D L ddllpaap AAAAAGAPAAARG 342
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4202 M PD VHFKTPQISMS D I D LNMKGPKV K - G DMDI svpkle GDL K g TKVDVKGPKM D I D TPDIDIH G pe G K L K G pkfkmp D L H 4280
Cdd:COG2982 343 L PD APLDLSALRAL D A D VRLSADSL K l G GLPL ------ GDL A - AHLTLDDGRL D L D PLSAGLY G -- G T L S G ------ S L T 407
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2168985312 4281 L K A PK i SM P D V D L N L kgp KVK G dvd IS L PKVEG DL K G PE v DIK G p KVDINA p D VDVQ G PDWH 4342
Cdd:COG2982 408 L D A RG - DP P R V A L K L --- SLS G --- VD L GPLLP DL A G FD - RLS G - TLNGDL - D LSGT G NSVA 459
AsmA super family
cl34531 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
4373-4723
1.36e-04
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
COG2982 :Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 48.11
E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4373 DL DV S - G P KVDIDVP DV NIEG PD AKLKG P KFKMPEM nikapkismp DI DL N L kgpkvkgdvd MS L PK ve GE IK V P E VDIK 4451
Cdd:COG2982 55 DL SL S l F P WPGVTLG DV TLSN PD GFGGP P LASAERL ---------- EL DL A L ---------- LP L LS -- GE LE V D E ITLD 112
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4452 GP KMDIDV - P D -- V N IEGPD A KLKGPKFKMP emni K A PKISMPD L HLKGPKV ----- KGDV D VS L PKVEGEIKV P E ---- 4519
Cdd:COG2982 113 GP VINLER d A D gr A N WDFLL A AAAAAADAEA ---- S A WSLDIGR L EITDGRL vydda ASGA D LT L DDLNLTLSG P S ldgp 188
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4520 VDIK G pkvdvdvpdvdvqgp DWH L KMPKVKM p KFSMP G FK A E GP --- EV D VSLPKAD L DVS G PKVDIDVP - DVNVD GP DM 4595
Cdd:COG2982 189 FRLS G --------------- SGR L NGQPLTL - DGKIG G LL A L GP ypl KL D LRSGDLR L SLD G TVDLAGLD g QLALS GP SL 252
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4596 KVKGPKFKMP ----------- EINIKAPKISMP D VDLE L KGPKVK G AF --- D G SV P KIE G T L KGPEI D MKG - PGLDFEGP 4660
Cdd:COG2982 253 RDLLALLGVT lpepgpfslsg RLTADGDRLRLE D LKGT L GDSDLT G DL svt G G DR P ALT G D L ASDRL D LDD l LPAAPAAA 332
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2168985312 4661 D A KLSGPNLKM P SLEVPVPKISGP DA N V H L KTPNVGIS G PK LG -- GGEVD L RGPKV DL ETP S LDV 4723
Cdd:COG2982 333 A A GAPAAARGL P DAPLDLSALRAL DA D V R L SADSLKLG G LP LG dl AAHLT L DDGRL DL DPL S AGL 397
PDZ_canonical super family
cl49608 canonical PDZ domain; Canonical PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs ...
23-57
4.57e-04
canonical PDZ domain; Canonical PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain. PDZ domains usually bind to short specific peptide sequences located at the C-terminal end of their partner proteins known as PDZ binding motifs. These domains can also interact with internal peptide motifs and certain lipids, and can take part in a head-to-tail oligomerization with other PDZ domains. The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. The canonical PDZ domain contains six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.
cd06716 :Pssm-ID: 483948 [Multi-domain]
Cd Length: 88
Bit Score: 42.26
E-value: 4.57e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 2168985312 23 GLT IAQ R D D ----- G VF V Q EV MQ NS P AA RT G VVK EGDQI V 57
Cdd:cd06716 18 GLT LCY R T D deedt G IY V S EV DP NS I AA KD G RIR EGDQI L 57
AsmA super family
cl34531 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
1777-1995
2.73e-03
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
COG2982 :Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 44.26
E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 1777 DM D V A V - P EIE GE MK V PDVDIK GP KVDI nap DV D VQ G - PD W HLKMPKVKMPK fsmpgf K AE GPEVDVSLPKADLD ----- 1849
Cdd:COG2982 91 EL D L A L l P LLS GE LE V DEITLD GP VINL --- ER D AD G r AN W DFLLAAAAAAA ------ D AE ASAWSLDIGRLEIT dgrlv 161
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 1850 ---- V SG PKVDIEVPDVNIE GP ---------- E G K L K G SKFKM p KLN I KAAKISM P - DVD L N L KGPK L KGEI D AS V PEME 1914
Cdd:COG2982 162 ydda A SG ADLTLDDLNLTLS GP sldgpfrlsg S G R L N G QPLTL - DGK I GGLLALG P y PLK L D L RSGD L RLSL D GT V DLAG 240
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 1915 A D L rgp Q IDVK GPS VDVEVPDVDLEC PE A --- K L K G pkfkmp DMHFKAPKISMP D VDLH L KGPKVK GD MD VT --- V P K L E 1988
Cdd:COG2982 241 L D G --- Q LALS GPS LRDLLALLGVTL PE P gpf S L S G ------ RLTADGDRLRLE D LKGT L GDSDLT GD LS VT ggd R P A L T 311
....*..
gi 2168985312 1989 G E L KGPS 1995
Cdd:COG2982 312 G D L ASDR 318
AsmA super family
cl34531 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
366-690
3.94e-03
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
COG2982 :Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 43.49
E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 366 SVNIEG L EGK L K GP QIT GP --- S LK G D L GLKGTK L Q G N IG MDD A CA - SKIEGSITGPCVEIG - TPD VD VH GL G G K L NVPK 440
Cdd:COG2982 170 DLTLDD L NLT L S GP SLD GP frl S GS G R L NGQPLT L D G K IG GLL A LG p YPLKLDLRSGDLRLS l DGT VD LA GL D G Q L ALSG 249
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 441 F S AS gskgegvgi D VALPT G kvtlpgvsgd V N LPE IATGG L E G KMKG akvktpemiv QKPKISMQ D VDLS LG SCK L K G NM 520
Cdd:COG2982 250 P S LR --------- D LLALL G ---------- V T LPE PGPFS L S G RLTA ---------- DGDRLRLE D LKGT LG DSD L T G DL 300
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 521 K V SA --- P EVK G GVKGPQVAVKGFGVDTETPNLE G TLTGPK l SS P SGKIGTCRISMA D V D LNVA A PKG K - GG IDVTLPKV 596
Cdd:COG2982 301 S V TG gdr P ALT G DLASDRLDLDDLLPAAPAAAAA G APAAAR - GL P DAPLDLSALRAL D A D VRLS A DSL K l GG LPLGDLAA 379
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 597 EGKVKGPEV D VK gp KTDISAP G VEVH G P --- EWNLKM P KFS ipg V K GEGAD V NV ---- P LAK G DIS LSG P --- KVNVEAP 666
Cdd:COG2982 380 HLTLDDGRL D LD -- PLSAGLY G GTLS G S ltl DARGDP P RVA --- L K LSLSG V DL gpll P DLA G FDR LSG T lng DLDLSGT 454
330 340
....*....|....*....|....*
gi 2168985312 667 DVN V EG L GGK L K G P - DIN L PE G SVK 690
Cdd:COG2982 455 GNS V AA L LAS L N G S a SLS L GD G AIS 479
Name
Accession
Description
Interval
E-value
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
4888-5418
2.82e-09
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 63.91
E-value: 2.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4888 DVDISSP GV NV EA PDIHVKA pkfkvpgve AAGPKIE G N L KGPKVQANLDTPDINIQGPEAKIKT P SFSV S A p QVSIPDVN 4967
Cdd:COG2911 6 GLTLRDD GV DL EA DRLRLDW --------- SPLALLR G R L CIDELALSASLDGDRLRLDNLDLDA P EGAL S G - LLDLVQAT 75
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4968 VKLK G PNIKGD - VPSVG L EGPDVD L QG p E G KIKFPKFSL pkisapgvkmgggst EIHAQM P S L e A G L STSDIKFE G pgv S 5046
Cdd:COG2911 76 LDAE G LDLASS a LDDLD L RSGGNR L TL - S G NLSAASLDG --------------- DLDLDA P D L - A D L AALLPGLA G --- S 135
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5047 L K G P G V D LP S V D LSL p KVSGPD LDL NL KG PSLKGDV A A S ------------------ SPSMK L H AP G - L DMKG ------- 5100
Cdd:COG2911 136 L S G D G L D SL S L D ADG - TLAQHR LDL DA KG EPASLSL A L S ggldrddggtlsrldfln TGRWG L A AP A t L SYDD grvtlgp 214
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5101 -- V AG KVQIGAD G VKVSGT D ATAA L S --------- VGAP D VT L K G S s L Q GD LAV SG DIKC P KVSV --- GTPEVSVEALE G 5166
Cdd:COG2911 215 lc L AG GGSLCLS G TLGGTL D LQLR L K nlplallnp FLPD D LG L S G T - L N GD ADL SG GLAN P QGDA sls LSGDLTLNDGL G 293
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5167 G VK L P -- QMK L p QFGISTPGSD LD INIK G PQV c G E L QG SG T --------------- DVN L KGPQISA ----- PG MDFN L E 5224
Cdd:COG2911 294 G LP L G lg DLT L - NARLANGRLT LD LTLD G GGL - G T L SL SG S vpladglppsapldg NLR L DNLDLAL lnpll PG VLER L S 371
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5225 G p KVR G S L GAT G E L KG P SIG G glpgi SIQGPE G N L QM P G ----------- IKAS G CDVKVSSGQISGP ei K G D L KG SG - I 5292
Cdd:COG2911 372 G - QLN G D L RLS G T L AA P QLN G ----- QLTLDD G R L KL P A lgvrltdinlr LRFD G DRLTLDGLTADSG -- G G T L TL SG t V 443
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5293 G L H G AVP -- DL SV KG PSFN --------- MA S PESDFGVSLK GP KVK G G V D V SGG - VSV P DINLGEGHMN ---- V KGFGG E 5356
Cdd:COG2911 444 D L D G LSW pa DL TL KG DNLR vlnppdyta TV S GDLTLTGTPD GP TLS G N V T V PRA r ITL P ELPPSAVSLS ddvv V VNRPP E 523
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2168985312 5357 WKGPQVSSS -- VN LD TTKLV G N - LHFS G PKIEGDV k GG QIG L Q G PGLSVSGPQ G HLESGS G KVTF 5418
Cdd:COG2911 524 PVPEEEAAG lp LD LD LNVNL G D d VRVR G FGLDARL - GG DLR L T G TPGGAPRLT G EINLVR G RYNA 587
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
2612-2940
1.47e-07
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 58.13
E-value: 1.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2612 M N IKTPKISMPDLN L N L KGPNVK G DV dvsip NVEGD L Q G PS L DIK S pk L DVNA P DI D IHG P EGK L K G pklkmp DMHVNMP 2691
Cdd:COG2911 288 L N DGLGGLPLGLGD L T L NARLAN G RL ----- TLDLT L D G GG L GTL S -- L SGSV P LA D GLP P SAP L D G ------ NLRLDNL 354
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2692 KISM ----- P DIDLN L K G s KVK GD VDI SG ---- P K L E G DIKTPKVDV K G P E L DISASKV N IDAKGKKS R FK L PKFNFSGS 2762
Cdd:COG2911 355 DLAL lnpll P GVLER L S G - QLN GD LRL SG tlaa P Q L N G QLTLDDGRL K L P A L GVRLTDI N LRLRFDGD R LT L DGLTADSG 433
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2763 KVQ ------------ TPEV D VK LK -------- K PD VDV T A - PKVDINAP -- EVEVQ G K V KG P K -- FKM P F L SI S SPKV S M 2817
Cdd:COG2911 434 GGT ltlsgtvdldgl SWPA D LT LK gdnlrvln P PD YTA T V s GDLTLTGT pd GPTLS G N V TV P R ar ITL P E L PP S AVSL S D 513
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2818 PD V EL N LKGPK V KG E LD A TV P n L EG D fkspk VDIKAP - DV QLNAPDV D V hgq EWNLKMH kmkmpkfs VS G VKAEG P dvav 2896
Cdd:COG2911 514 DV V VV N RPPEP V PE E EA A GL P - L DL D ----- LNVNLG d DV RVRGFGL D A --- RLGGDLR -------- LT G TPGGA P ---- 572
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 2168985312 2897 d LPK G D IN IEGPSM N IE G PE L NV E cp E GS LK -- GP KF k M P EMN I K A 2940
Cdd:COG2911 573 - RLT G E IN LVRGRY N AY G QR L TI E -- R GS IT fn GP PL - D P YLD I E A 614
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
3922-4342
1.14e-04
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 48.50
E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 3922 DL DV S - G P KVDIDVP DV NIEG PD AKLKG P KFKMPEM nikapkismpdlhlkgpkikg DV D VS L PKV - E GE IK V P E VDIK G 3999
Cdd:COG2982 55 DL SL S l F P WPGVTLG DV TLSN PD GFGGP P LASAERL --------------------- EL D LA L LPL l S GE LE V D E ITLD G 113
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4000 P K vdi DVPDV D VQ G - PD W HLKMPKMKMP -------- KFSMPGFKAEGPEVDVSLPKADL D V T GPKVDIDVPDVNVG GP - D 4069
Cdd:COG2982 114 P V --- INLER D AD G r AN W DFLLAAAAAA adaeasaw SLDIGRLEITDGRLVYDDAASGA D L T LDDLNLTLSGPSLD GP f R 190
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4070 VKVK G p KFKMPEMNIKA p KI SMP ------ DFD L H L KGPKVKGDV D ASLPKMEGP G - VDIDS P D ------- VNIEG PE G -- 4133
Cdd:COG2982 191 LSGS G - RLNGQPLTLDG - KI GGL lalgpy PLK L D L RSGDLRLSL D GTVDLAGLD G q LALSG P S lrdllal LGVTL PE P gp 268
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4134 - K L K G pkfkmp DMHIKAPKISMP D FDLN L KG S KVK GD VDLSL --- P KVE GDL KGPEI D I -------- ECPEGKLKGPKFK 4201
Cdd:COG2982 269 f S L S G ------ RLTADGDRLRLE D LKGT L GD S DLT GD LSVTG gdr P ALT GDL ASDRL D L ddllpaap AAAAAGAPAAARG 342
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4202 M PD VHFKTPQISMS D I D LNMKGPKV K - G DMDI svpkle GDL K g TKVDVKGPKM D I D TPDIDIH G pe G K L K G pkfkmp D L H 4280
Cdd:COG2982 343 L PD APLDLSALRAL D A D VRLSADSL K l G GLPL ------ GDL A - AHLTLDDGRL D L D PLSAGLY G -- G T L S G ------ S L T 407
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2168985312 4281 L K A PK i SM P D V D L N L kgp KVK G dvd IS L PKVEG DL K G PE v DIK G p KVDINA p D VDVQ G PDWH 4342
Cdd:COG2982 408 L D A RG - DP P R V A L K L --- SLS G --- VD L GPLLP DL A G FD - RLS G - TLNGDL - D LSGT G NSVA 459
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
4373-4723
1.36e-04
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 48.11
E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4373 DL DV S - G P KVDIDVP DV NIEG PD AKLKG P KFKMPEM nikapkismp DI DL N L kgpkvkgdvd MS L PK ve GE IK V P E VDIK 4451
Cdd:COG2982 55 DL SL S l F P WPGVTLG DV TLSN PD GFGGP P LASAERL ---------- EL DL A L ---------- LP L LS -- GE LE V D E ITLD 112
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4452 GP KMDIDV - P D -- V N IEGPD A KLKGPKFKMP emni K A PKISMPD L HLKGPKV ----- KGDV D VS L PKVEGEIKV P E ---- 4519
Cdd:COG2982 113 GP VINLER d A D gr A N WDFLL A AAAAAADAEA ---- S A WSLDIGR L EITDGRL vydda ASGA D LT L DDLNLTLSG P S ldgp 188
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4520 VDIK G pkvdvdvpdvdvqgp DWH L KMPKVKM p KFSMP G FK A E GP --- EV D VSLPKAD L DVS G PKVDIDVP - DVNVD GP DM 4595
Cdd:COG2982 189 FRLS G --------------- SGR L NGQPLTL - DGKIG G LL A L GP ypl KL D LRSGDLR L SLD G TVDLAGLD g QLALS GP SL 252
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4596 KVKGPKFKMP ----------- EINIKAPKISMP D VDLE L KGPKVK G AF --- D G SV P KIE G T L KGPEI D MKG - PGLDFEGP 4660
Cdd:COG2982 253 RDLLALLGVT lpepgpfslsg RLTADGDRLRLE D LKGT L GDSDLT G DL svt G G DR P ALT G D L ASDRL D LDD l LPAAPAAA 332
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2168985312 4661 D A KLSGPNLKM P SLEVPVPKISGP DA N V H L KTPNVGIS G PK LG -- GGEVD L RGPKV DL ETP S LDV 4723
Cdd:COG2982 333 A A GAPAAARGL P DAPLDLSALRAL DA D V R L SADSLKLG G LP LG dl AAHLT L DDGRL DL DPL S AGL 397
Herpes_BLLF1
pfam05109 Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
4578-4776
2.08e-04
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain]
Cd Length: 886
Bit Score: 47.99
E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4578 G P KVDIDV P DV N VD G --- P DMKVKG P KFKMPEI N IK AP KIS mpdvdlelk GP K V KG A f D GSV P KIE GT LK G PEIDMKG P G 4654
Cdd:pfam05109 424 A P ESTTTS P TL N TT G faa P NTTTGL P SSTHVPT N LT AP AST --------- GP T V ST A - D VTS P TPA GT TS G ASPVTPS P S 493
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4655 LDFE G PDA K ls G P NLKM P SLE V -- P V P KISG P DAN V HLK TPN V gi SG P K LG G gevdl RG P KVDLE TP SLDVHMES P DINI 4732
Cdd:pfam05109 494 PRDN G TES K -- A P DMTS P TSA V tt P T P NATS P TPA V TTP TPN A -- TS P T LG K ----- TS P TSAVT TP TPNATSPT P AVTT 564
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2168985312 4733 EG P DVKV P KFK K PKFGFGAKS P KADIKT PTV DV T V P E A ELSVE T 4776
Cdd:pfam05109 565 PT P NATI P TLG K TSPTSAVTT P TPNATS PTV GE T S P Q A NTTNH T 608
PDZ2-PDZRN4-like
cd06716 PDZ domain 2 of PDZ domain-containing RING finger protein 4 (PDZRN4), PDZRN3-B, and related ...
23-57
4.57e-04
PDZ domain 2 of PDZ domain-containing RING finger protein 4 (PDZRN4), PDZRN3-B, and related domains; PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain 1 of PDZRN4, PDZRN3-B, and related domains. PDZRN4 (also known as ligand of numb protein X 4, and SEMACAP3-like protein) contains an N-terminal RING domain and two tandem repeat PDZ domains. It is involved in the progression of cancer, including human liver cancer and breast cancer, and may contribute to the tumorigenesis of rectal adenocarcinoma. Danio rerio PDZRN3-B may participate in neurogenesis: the first PDZ domain of Danio rerio Pdzrn3 interacts with Kidins220 (Kinase D-interacting substrate 220 kD, also named Ankyrin Repeat-Rich Membrane Spanning), a crucial mediator of signal transduction in neural tissues. PDZ domains usually bind in a sequence-specific manner to short peptide sequences located at the C-terminal end of their partner proteins (known as PDZ binding motifs). The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. This PDZRN4-like family PDZ2 domain is a canonical PDZ domain containing six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.
Pssm-ID: 467200 [Multi-domain]
Cd Length: 88
Bit Score: 42.26
E-value: 4.57e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 2168985312 23 GLT IAQ R D D ----- G VF V Q EV MQ NS P AA RT G VVK EGDQI V 57
Cdd:cd06716 18 GLT LCY R T D deedt G IY V S EV DP NS I AA KD G RIR EGDQI L 57
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
1777-1995
2.73e-03
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 44.26
E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 1777 DM D V A V - P EIE GE MK V PDVDIK GP KVDI nap DV D VQ G - PD W HLKMPKVKMPK fsmpgf K AE GPEVDVSLPKADLD ----- 1849
Cdd:COG2982 91 EL D L A L l P LLS GE LE V DEITLD GP VINL --- ER D AD G r AN W DFLLAAAAAAA ------ D AE ASAWSLDIGRLEIT dgrlv 161
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 1850 ---- V SG PKVDIEVPDVNIE GP ---------- E G K L K G SKFKM p KLN I KAAKISM P - DVD L N L KGPK L KGEI D AS V PEME 1914
Cdd:COG2982 162 ydda A SG ADLTLDDLNLTLS GP sldgpfrlsg S G R L N G QPLTL - DGK I GGLLALG P y PLK L D L RSGD L RLSL D GT V DLAG 240
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 1915 A D L rgp Q IDVK GPS VDVEVPDVDLEC PE A --- K L K G pkfkmp DMHFKAPKISMP D VDLH L KGPKVK GD MD VT --- V P K L E 1988
Cdd:COG2982 241 L D G --- Q LALS GPS LRDLLALLGVTL PE P gpf S L S G ------ RLTADGDRLRLE D LKGT L GDSDLT GD LS VT ggd R P A L T 311
....*..
gi 2168985312 1989 G E L KGPS 1995
Cdd:COG2982 312 G D L ASDR 318
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
366-690
3.94e-03
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 43.49
E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 366 SVNIEG L EGK L K GP QIT GP --- S LK G D L GLKGTK L Q G N IG MDD A CA - SKIEGSITGPCVEIG - TPD VD VH GL G G K L NVPK 440
Cdd:COG2982 170 DLTLDD L NLT L S GP SLD GP frl S GS G R L NGQPLT L D G K IG GLL A LG p YPLKLDLRSGDLRLS l DGT VD LA GL D G Q L ALSG 249
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 441 F S AS gskgegvgi D VALPT G kvtlpgvsgd V N LPE IATGG L E G KMKG akvktpemiv QKPKISMQ D VDLS LG SCK L K G NM 520
Cdd:COG2982 250 P S LR --------- D LLALL G ---------- V T LPE PGPFS L S G RLTA ---------- DGDRLRLE D LKGT LG DSD L T G DL 300
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 521 K V SA --- P EVK G GVKGPQVAVKGFGVDTETPNLE G TLTGPK l SS P SGKIGTCRISMA D V D LNVA A PKG K - GG IDVTLPKV 596
Cdd:COG2982 301 S V TG gdr P ALT G DLASDRLDLDDLLPAAPAAAAA G APAAAR - GL P DAPLDLSALRAL D A D VRLS A DSL K l GG LPLGDLAA 379
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 597 EGKVKGPEV D VK gp KTDISAP G VEVH G P --- EWNLKM P KFS ipg V K GEGAD V NV ---- P LAK G DIS LSG P --- KVNVEAP 666
Cdd:COG2982 380 HLTLDDGRL D LD -- PLSAGLY G GTLS G S ltl DARGDP P RVA --- L K LSLSG V DL gpll P DLA G FDR LSG T lng DLDLSGT 454
330 340
....*....|....*....|....*
gi 2168985312 667 DVN V EG L GGK L K G P - DIN L PE G SVK 690
Cdd:COG2982 455 GNS V AA L LAS L N G S a SLS L GD G AIS 479
Name
Accession
Description
Interval
E-value
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
4888-5418
2.82e-09
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 63.91
E-value: 2.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4888 DVDISSP GV NV EA PDIHVKA pkfkvpgve AAGPKIE G N L KGPKVQANLDTPDINIQGPEAKIKT P SFSV S A p QVSIPDVN 4967
Cdd:COG2911 6 GLTLRDD GV DL EA DRLRLDW --------- SPLALLR G R L CIDELALSASLDGDRLRLDNLDLDA P EGAL S G - LLDLVQAT 75
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4968 VKLK G PNIKGD - VPSVG L EGPDVD L QG p E G KIKFPKFSL pkisapgvkmgggst EIHAQM P S L e A G L STSDIKFE G pgv S 5046
Cdd:COG2911 76 LDAE G LDLASS a LDDLD L RSGGNR L TL - S G NLSAASLDG --------------- DLDLDA P D L - A D L AALLPGLA G --- S 135
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5047 L K G P G V D LP S V D LSL p KVSGPD LDL NL KG PSLKGDV A A S ------------------ SPSMK L H AP G - L DMKG ------- 5100
Cdd:COG2911 136 L S G D G L D SL S L D ADG - TLAQHR LDL DA KG EPASLSL A L S ggldrddggtlsrldfln TGRWG L A AP A t L SYDD grvtlgp 214
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5101 -- V AG KVQIGAD G VKVSGT D ATAA L S --------- VGAP D VT L K G S s L Q GD LAV SG DIKC P KVSV --- GTPEVSVEALE G 5166
Cdd:COG2911 215 lc L AG GGSLCLS G TLGGTL D LQLR L K nlplallnp FLPD D LG L S G T - L N GD ADL SG GLAN P QGDA sls LSGDLTLNDGL G 293
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5167 G VK L P -- QMK L p QFGISTPGSD LD INIK G PQV c G E L QG SG T --------------- DVN L KGPQISA ----- PG MDFN L E 5224
Cdd:COG2911 294 G LP L G lg DLT L - NARLANGRLT LD LTLD G GGL - G T L SL SG S vpladglppsapldg NLR L DNLDLAL lnpll PG VLER L S 371
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5225 G p KVR G S L GAT G E L KG P SIG G glpgi SIQGPE G N L QM P G ----------- IKAS G CDVKVSSGQISGP ei K G D L KG SG - I 5292
Cdd:COG2911 372 G - QLN G D L RLS G T L AA P QLN G ----- QLTLDD G R L KL P A lgvrltdinlr LRFD G DRLTLDGLTADSG -- G G T L TL SG t V 443
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5293 G L H G AVP -- DL SV KG PSFN --------- MA S PESDFGVSLK GP KVK G G V D V SGG - VSV P DINLGEGHMN ---- V KGFGG E 5356
Cdd:COG2911 444 D L D G LSW pa DL TL KG DNLR vlnppdyta TV S GDLTLTGTPD GP TLS G N V T V PRA r ITL P ELPPSAVSLS ddvv V VNRPP E 523
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2168985312 5357 WKGPQVSSS -- VN LD TTKLV G N - LHFS G PKIEGDV k GG QIG L Q G PGLSVSGPQ G HLESGS G KVTF 5418
Cdd:COG2911 524 PVPEEEAAG lp LD LD LNVNL G D d VRVR G FGLDARL - GG DLR L T G TPGGAPRLT G EINLVR G RYNA 587
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
2612-2940
1.47e-07
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 58.13
E-value: 1.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2612 M N IKTPKISMPDLN L N L KGPNVK G DV dvsip NVEGD L Q G PS L DIK S pk L DVNA P DI D IHG P EGK L K G pklkmp DMHVNMP 2691
Cdd:COG2911 288 L N DGLGGLPLGLGD L T L NARLAN G RL ----- TLDLT L D G GG L GTL S -- L SGSV P LA D GLP P SAP L D G ------ NLRLDNL 354
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2692 KISM ----- P DIDLN L K G s KVK GD VDI SG ---- P K L E G DIKTPKVDV K G P E L DISASKV N IDAKGKKS R FK L PKFNFSGS 2762
Cdd:COG2911 355 DLAL lnpll P GVLER L S G - QLN GD LRL SG tlaa P Q L N G QLTLDDGRL K L P A L GVRLTDI N LRLRFDGD R LT L DGLTADSG 433
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2763 KVQ ------------ TPEV D VK LK -------- K PD VDV T A - PKVDINAP -- EVEVQ G K V KG P K -- FKM P F L SI S SPKV S M 2817
Cdd:COG2911 434 GGT ltlsgtvdldgl SWPA D LT LK gdnlrvln P PD YTA T V s GDLTLTGT pd GPTLS G N V TV P R ar ITL P E L PP S AVSL S D 513
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2818 PD V EL N LKGPK V KG E LD A TV P n L EG D fkspk VDIKAP - DV QLNAPDV D V hgq EWNLKMH kmkmpkfs VS G VKAEG P dvav 2896
Cdd:COG2911 514 DV V VV N RPPEP V PE E EA A GL P - L DL D ----- LNVNLG d DV RVRGFGL D A --- RLGGDLR -------- LT G TPGGA P ---- 572
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 2168985312 2897 d LPK G D IN IEGPSM N IE G PE L NV E cp E GS LK -- GP KF k M P EMN I K A 2940
Cdd:COG2911 573 - RLT G E IN LVRGRY N AY G QR L TI E -- R GS IT fn GP PL - D P YLD I E A 614
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
4807-5238
6.81e-05
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 49.65
E-value: 6.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4807 QGF DL NV P G G EIDAS L KVPDVDVSVA G P D A A LK A ---- EVK S PKVKK T MF G KM -- YFP D VEF D IKS P KFKAE AAL P s P K L 4880
Cdd:COG2911 54 DNL DL DA P E G ALSGL L DLVQATLDAE G L D L A SS A lddl DLR S GGNRL T LS G NL sa ASL D GDL D LDA P DLADL AAL L - P G L 132
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4881 E G EIK --- VPDVDISSP G v NVEAPDIHVK A p K FKVPGVEA A gpk IE G N L KGPK v QAN L DTP D I n IQGPEAKIKT P - SF S V 4956
Cdd:COG2911 133 A G SLS gdg LDSLSLDAD G - TLAQHRLDLD A - K GEPASLSL A --- LS G G L DRDD - GGT L SRL D F - LNTGRWGLAA P a TL S Y 205
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4957 SAPQ V SIPDVNVKLK G ----------- PNIKGDVPSVG L E ------ GP D VD L Q G ------- PE G KIKF P KFSL p KI S AP G 5012
Cdd:COG2911 206 DDGR V TLGPLCLAGG G slclsgtlggt LDLQLRLKNLP L A llnpfl PD D LG L S G tlngdad LS G GLAN P QGDA - SL S LS G 284
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5013 - VKMGG G STEIHAQMPS L EAGLS -------- TSDIKFE G P G ------- V S L KGPGVDLPSV D LS L p KVSGP DL ------- 5069
Cdd:COG2911 285 d LTLND G LGGLPLGLGD L TLNAR langrltl DLTLDGG G L G tlslsgs V P L ADGLPPSAPL D GN L - RLDNL DL allnpll 363
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5070 ------------- DL N L K G ---- P S L K G DVAASSPSM KL H A P G LDMKGVAGKVQIGA D GVKVS G TD A TAA --- L SVGA p D 5129
Cdd:COG2911 364 pgvlerlsgqlng DL R L S G tlaa P Q L N G QLTLDDGRL KL P A L G VRLTDINLRLRFDG D RLTLD G LT A DSG ggt L TLSG - T 442
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5130 V T L K G S S LQG DL AVS GD ikcp KVS V --------- GTPEVSVEA ------ L E G G V KL P Q -- MK LP QFGI S TPGSDL D INIK 5192
Cdd:COG2911 443 V D L D G L S WPA DL TLK GD ---- NLR V lnppdytat VSGDLTLTG tpdgpt L S G N V TV P R ar IT LP ELPP S AVSLSD D VVVV 518
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 5193 GPQVCGELQGSGT ------ D V N LK - G PQ -- ISAP G M D FN L E G - PKVR G S ---- LGA TGE L 5238
Cdd:COG2911 519 NRPPEPVPEEEAA glpldl D L N VN l G DD vr VRGF G L D AR L G G d LRLT G T pgga PRL TGE I 578
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
3922-4342
1.14e-04
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 48.50
E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 3922 DL DV S - G P KVDIDVP DV NIEG PD AKLKG P KFKMPEM nikapkismpdlhlkgpkikg DV D VS L PKV - E GE IK V P E VDIK G 3999
Cdd:COG2982 55 DL SL S l F P WPGVTLG DV TLSN PD GFGGP P LASAERL --------------------- EL D LA L LPL l S GE LE V D E ITLD G 113
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4000 P K vdi DVPDV D VQ G - PD W HLKMPKMKMP -------- KFSMPGFKAEGPEVDVSLPKADL D V T GPKVDIDVPDVNVG GP - D 4069
Cdd:COG2982 114 P V --- INLER D AD G r AN W DFLLAAAAAA adaeasaw SLDIGRLEITDGRLVYDDAASGA D L T LDDLNLTLSGPSLD GP f R 190
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4070 VKVK G p KFKMPEMNIKA p KI SMP ------ DFD L H L KGPKVKGDV D ASLPKMEGP G - VDIDS P D ------- VNIEG PE G -- 4133
Cdd:COG2982 191 LSGS G - RLNGQPLTLDG - KI GGL lalgpy PLK L D L RSGDLRLSL D GTVDLAGLD G q LALSG P S lrdllal LGVTL PE P gp 268
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4134 - K L K G pkfkmp DMHIKAPKISMP D FDLN L KG S KVK GD VDLSL --- P KVE GDL KGPEI D I -------- ECPEGKLKGPKFK 4201
Cdd:COG2982 269 f S L S G ------ RLTADGDRLRLE D LKGT L GD S DLT GD LSVTG gdr P ALT GDL ASDRL D L ddllpaap AAAAAGAPAAARG 342
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4202 M PD VHFKTPQISMS D I D LNMKGPKV K - G DMDI svpkle GDL K g TKVDVKGPKM D I D TPDIDIH G pe G K L K G pkfkmp D L H 4280
Cdd:COG2982 343 L PD APLDLSALRAL D A D VRLSADSL K l G GLPL ------ GDL A - AHLTLDDGRL D L D PLSAGLY G -- G T L S G ------ S L T 407
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2168985312 4281 L K A PK i SM P D V D L N L kgp KVK G dvd IS L PKVEG DL K G PE v DIK G p KVDINA p D VDVQ G PDWH 4342
Cdd:COG2982 408 L D A RG - DP P R V A L K L --- SLS G --- VD L GPLLP DL A G FD - RLS G - TLNGDL - D LSGT G NSVA 459
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
4373-4723
1.36e-04
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 48.11
E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4373 DL DV S - G P KVDIDVP DV NIEG PD AKLKG P KFKMPEM nikapkismp DI DL N L kgpkvkgdvd MS L PK ve GE IK V P E VDIK 4451
Cdd:COG2982 55 DL SL S l F P WPGVTLG DV TLSN PD GFGGP P LASAERL ---------- EL DL A L ---------- LP L LS -- GE LE V D E ITLD 112
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4452 GP KMDIDV - P D -- V N IEGPD A KLKGPKFKMP emni K A PKISMPD L HLKGPKV ----- KGDV D VS L PKVEGEIKV P E ---- 4519
Cdd:COG2982 113 GP VINLER d A D gr A N WDFLL A AAAAAADAEA ---- S A WSLDIGR L EITDGRL vydda ASGA D LT L DDLNLTLSG P S ldgp 188
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4520 VDIK G pkvdvdvpdvdvqgp DWH L KMPKVKM p KFSMP G FK A E GP --- EV D VSLPKAD L DVS G PKVDIDVP - DVNVD GP DM 4595
Cdd:COG2982 189 FRLS G --------------- SGR L NGQPLTL - DGKIG G LL A L GP ypl KL D LRSGDLR L SLD G TVDLAGLD g QLALS GP SL 252
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4596 KVKGPKFKMP ----------- EINIKAPKISMP D VDLE L KGPKVK G AF --- D G SV P KIE G T L KGPEI D MKG - PGLDFEGP 4660
Cdd:COG2982 253 RDLLALLGVT lpepgpfslsg RLTADGDRLRLE D LKGT L GDSDLT G DL svt G G DR P ALT G D L ASDRL D LDD l LPAAPAAA 332
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2168985312 4661 D A KLSGPNLKM P SLEVPVPKISGP DA N V H L KTPNVGIS G PK LG -- GGEVD L RGPKV DL ETP S LDV 4723
Cdd:COG2982 333 A A GAPAAARGL P DAPLDLSALRAL DA D V R L SADSLKLG G LP LG dl AAHLT L DDGRL DL DPL S AGL 397
Herpes_BLLF1
pfam05109 Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
4578-4776
2.08e-04
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain]
Cd Length: 886
Bit Score: 47.99
E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4578 G P KVDIDV P DV N VD G --- P DMKVKG P KFKMPEI N IK AP KIS mpdvdlelk GP K V KG A f D GSV P KIE GT LK G PEIDMKG P G 4654
Cdd:pfam05109 424 A P ESTTTS P TL N TT G faa P NTTTGL P SSTHVPT N LT AP AST --------- GP T V ST A - D VTS P TPA GT TS G ASPVTPS P S 493
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4655 LDFE G PDA K ls G P NLKM P SLE V -- P V P KISG P DAN V HLK TPN V gi SG P K LG G gevdl RG P KVDLE TP SLDVHMES P DINI 4732
Cdd:pfam05109 494 PRDN G TES K -- A P DMTS P TSA V tt P T P NATS P TPA V TTP TPN A -- TS P T LG K ----- TS P TSAVT TP TPNATSPT P AVTT 564
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2168985312 4733 EG P DVKV P KFK K PKFGFGAKS P KADIKT PTV DV T V P E A ELSVE T 4776
Cdd:pfam05109 565 PT P NATI P TLG K TSPTSAVTT P TPNATS PTV GE T S P Q A NTTNH T 608
PDZ2-PDZRN4-like
cd06716 PDZ domain 2 of PDZ domain-containing RING finger protein 4 (PDZRN4), PDZRN3-B, and related ...
23-57
4.57e-04
PDZ domain 2 of PDZ domain-containing RING finger protein 4 (PDZRN4), PDZRN3-B, and related domains; PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain 1 of PDZRN4, PDZRN3-B, and related domains. PDZRN4 (also known as ligand of numb protein X 4, and SEMACAP3-like protein) contains an N-terminal RING domain and two tandem repeat PDZ domains. It is involved in the progression of cancer, including human liver cancer and breast cancer, and may contribute to the tumorigenesis of rectal adenocarcinoma. Danio rerio PDZRN3-B may participate in neurogenesis: the first PDZ domain of Danio rerio Pdzrn3 interacts with Kidins220 (Kinase D-interacting substrate 220 kD, also named Ankyrin Repeat-Rich Membrane Spanning), a crucial mediator of signal transduction in neural tissues. PDZ domains usually bind in a sequence-specific manner to short peptide sequences located at the C-terminal end of their partner proteins (known as PDZ binding motifs). The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. This PDZRN4-like family PDZ2 domain is a canonical PDZ domain containing six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.
Pssm-ID: 467200 [Multi-domain]
Cd Length: 88
Bit Score: 42.26
E-value: 4.57e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 2168985312 23 GLT IAQ R D D ----- G VF V Q EV MQ NS P AA RT G VVK EGDQI V 57
Cdd:cd06716 18 GLT LCY R T D deedt G IY V S EV DP NS I AA KD G RIR EGDQI L 57
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
2699-3141
5.55e-04
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 46.57
E-value: 5.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2699 DL N L K G s KVK GD V D I SG ---- P KLEGDIKTP --- KVDVKGPE L DISASKVNID A KGKKS R FK L pkfnfs GSKVQTPEVDV 2771
Cdd:COG2911 254 DL G L S G - TLN GD A D L SG glan P QGDASLSLS gdl TLNDGLGG L PLGLGDLTLN A RLANG R LT L ------ DLTLDGGGLGT 326
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2772 klkk PDVDVTA P KV D INA P EVEVQ G KVKGPKFKMPF L SISS P K V SM pdvelnlkgp KVK G E L DATV p N L E G DFKS P KVD i 2851
Cdd:COG2911 327 ---- LSLSGSV P LA D GLP P SAPLD G NLRLDNLDLAL L NPLL P G V LE ---------- RLS G Q L NGDL - R L S G TLAA P QLN - 390
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2852 kapd V QL NAP D VDVHGQEWNLKMHKMKM p KFSVS G VKAEGPDVAV D LPK G DINIE G p SMNIE G PELNVE cpe GS LKG PKF 2931
Cdd:COG2911 391 ---- G QL TLD D GRLKLPALGVRLTDINL - RLRFD G DRLTLDGLTA D SGG G TLTLS G - TVDLD G LSWPAD --- LT LKG DNL 461
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2932 K --- M P EMNIKA - PKIS mpn IDLNLK GP KVK G D V D V slpkvegdlkgpevdikg P KMD I DV P DVDVQGPDWHLKMPK V KM 3007
Cdd:COG2911 462 R vln P P DYTATV s GDLT --- LTGTPD GP TLS G N V T V ------------------ P RAR I TL P ELPPSAVSLSDDVVV V NR 520
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 3008 P KFSM P GFK A E G PEV dvslska DLD V sgp K V DID v P DV NIE G P -- DA K L K G pkfkmpemnikapkismpdi DL H L K G --- 3082
Cdd:COG2911 521 P PEPV P EEE A A G LPL ------- DLD L --- N V NLG - D DV RVR G F gl DA R L G G -------------------- DL R L T G tpg 569
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 3083 -- P KIK G DVDV slpk V E G DLE ---------------- GP HV D ikg P KV DI N A ---- P DV D ---- V Q G P dwh LKM PK MKM p 3136
Cdd:COG2911 570 ga P RLT G EINL ---- V R G RYN aygqrltiergsitfn GP PL D --- P YL DI E A vrtv D DV T agvr V T G T --- ASN PK ITL - 638
....*
gi 2168985312 3137 k FS M P 3141
Cdd:COG2911 639 - FS D P 642
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
2508-2867
1.41e-03
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 45.03
E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2508 DV D VS L PKV - E GE IK V P E VDIK GP K vdi DVPDV D VQ G - PD W HLKMPKMKMPK fsmpgf K AE GPEVDVSLPKADLD ----- 2580
Cdd:COG2982 91 EL D LA L LPL l S GE LE V D E ITLD GP V --- INLER D AD G r AN W DFLLAAAAAAA ------ D AE ASAWSLDIGRLEIT dgrlv 161
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2581 ---- V SG PKVDI D VPDVNIE GP D ---------- AK L K G PKFKM p EMN I KTPKISM P - D L N L N L KGPNVKGDV D -- V SIPN 2643
Cdd:COG2982 162 ydda A SG ADLTL D DLNLTLS GP S ldgpfrlsgs GR L N G QPLTL - DGK I GGLLALG P y P L K L D L RSGDLRLSL D gt V DLAG 240
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2644 VE G D L -- Q GPSL DIKSPK L D V NA P D idih GPEGK L K G pklkmp DMHVNMPKISMP D IDLN L KG S KVK GD VDIS G --- P K L 2718
Cdd:COG2982 241 LD G Q L al S GPSL RDLLAL L G V TL P E ---- PGPFS L S G ------ RLTADGDRLRLE D LKGT L GD S DLT GD LSVT G gdr P A L 310
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2719 E GD IKTPKV D VK ---------------------- GPE LD I SA SK v NI DA KG kks R FKLPKFNFS G SKVQTPEVDVK L KKP 2776
Cdd:COG2982 311 T GD LASDRL D LD dllpaapaaaaagapaaarglp DAP LD L SA LR - AL DA DV --- R LSADSLKLG G LPLGDLAAHLT L DDG 386
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 2777 DV D VT ap KVDINAPEVEVQ G KV ------ KG P KFKMP f LS I S SPKVS -- M PD VELN lkg PKVK G E L DATV p N L E G DFK S PK 2848
Cdd:COG2982 387 RL D LD -- PLSAGLYGGTLS G SL tldarg DP P RVALK - LS L S GVDLG pl L PD LAGF --- DRLS G T L NGDL - D L S G TGN S VA 459
410 420
....*....|....*....|..
gi 2168985312 2849 v DIK A P --- DVQ L NAP D VDVH G 2867
Cdd:COG2982 460 - ALL A S lng SAS L SLG D GAIS G 480
PDZ_canonical
cd00136 canonical PDZ domain; Canonical PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs ...
23-57
1.54e-03
canonical PDZ domain; Canonical PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain. PDZ domains usually bind to short specific peptide sequences located at the C-terminal end of their partner proteins known as PDZ binding motifs. These domains can also interact with internal peptide motifs and certain lipids, and can take part in a head-to-tail oligomerization with other PDZ domains. The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. The canonical PDZ domain contains six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.
Pssm-ID: 467153 [Multi-domain]
Cd Length: 81
Bit Score: 40.60
E-value: 1.54e-03
10 20 30
....*....|....*....|....*....|....*...
gi 2168985312 23 G LT I A --- QRDD G V FV QE V MQNS PAAR T G VVKE GD Q I V 57
Cdd:cd00136 13 G FS I R ggk DGGG G I FV SR V EPGG PAAR D G RLRV GD R I L 50
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
1777-1995
2.73e-03
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 44.26
E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 1777 DM D V A V - P EIE GE MK V PDVDIK GP KVDI nap DV D VQ G - PD W HLKMPKVKMPK fsmpgf K AE GPEVDVSLPKADLD ----- 1849
Cdd:COG2982 91 EL D L A L l P LLS GE LE V DEITLD GP VINL --- ER D AD G r AN W DFLLAAAAAAA ------ D AE ASAWSLDIGRLEIT dgrlv 161
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 1850 ---- V SG PKVDIEVPDVNIE GP ---------- E G K L K G SKFKM p KLN I KAAKISM P - DVD L N L KGPK L KGEI D AS V PEME 1914
Cdd:COG2982 162 ydda A SG ADLTLDDLNLTLS GP sldgpfrlsg S G R L N G QPLTL - DGK I GGLLALG P y PLK L D L RSGD L RLSL D GT V DLAG 240
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 1915 A D L rgp Q IDVK GPS VDVEVPDVDLEC PE A --- K L K G pkfkmp DMHFKAPKISMP D VDLH L KGPKVK GD MD VT --- V P K L E 1988
Cdd:COG2982 241 L D G --- Q LALS GPS LRDLLALLGVTL PE P gpf S L S G ------ RLTADGDRLRLE D LKGT L GDSDLT GD LS VT ggd R P A L T 311
....*..
gi 2168985312 1989 G E L KGPS 1995
Cdd:COG2982 312 G D L ASDR 318
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
366-690
3.94e-03
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 43.49
E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 366 SVNIEG L EGK L K GP QIT GP --- S LK G D L GLKGTK L Q G N IG MDD A CA - SKIEGSITGPCVEIG - TPD VD VH GL G G K L NVPK 440
Cdd:COG2982 170 DLTLDD L NLT L S GP SLD GP frl S GS G R L NGQPLT L D G K IG GLL A LG p YPLKLDLRSGDLRLS l DGT VD LA GL D G Q L ALSG 249
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 441 F S AS gskgegvgi D VALPT G kvtlpgvsgd V N LPE IATGG L E G KMKG akvktpemiv QKPKISMQ D VDLS LG SCK L K G NM 520
Cdd:COG2982 250 P S LR --------- D LLALL G ---------- V T LPE PGPFS L S G RLTA ---------- DGDRLRLE D LKGT LG DSD L T G DL 300
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 521 K V SA --- P EVK G GVKGPQVAVKGFGVDTETPNLE G TLTGPK l SS P SGKIGTCRISMA D V D LNVA A PKG K - GG IDVTLPKV 596
Cdd:COG2982 301 S V TG gdr P ALT G DLASDRLDLDDLLPAAPAAAAA G APAAAR - GL P DAPLDLSALRAL D A D VRLS A DSL K l GG LPLGDLAA 379
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 597 EGKVKGPEV D VK gp KTDISAP G VEVH G P --- EWNLKM P KFS ipg V K GEGAD V NV ---- P LAK G DIS LSG P --- KVNVEAP 666
Cdd:COG2982 380 HLTLDDGRL D LD -- PLSAGLY G GTLS G S ltl DARGDP P RVA --- L K LSLSG V DL gpll P DLA G FDR LSG T lng DLDLSGT 454
330 340
....*....|....*....|....*
gi 2168985312 667 DVN V EG L GGK L K G P - DIN L PE G SVK 690
Cdd:COG2982 455 GNS V AA L LAS L N G S a SLS L GD G AIS 479
Herpes_BLLF1
pfam05109 Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
4644-4781
9.60e-03
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain]
Cd Length: 886
Bit Score: 42.60
E-value: 9.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2168985312 4644 K G PE IDMKG P G L D --- F EG P DAKLSG P NLKMPSLEVPV P KIS GP D --- A N V HLK TP NVGI SG --------- P KLG G G E V - 4707
Cdd:pfam05109 423 K A PE STTTS P T L N ttg F AA P NTTTGL P SSTHVPTNLTA P AST GP T vst A D V TSP TP AGTT SG aspvtpsps P RDN G T E S k 502
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2168985312 4708 -- D LRG P KVDLE TP SLDVHMES P DINIEG P DVKV P K fkkpkfg F G AK SP KADIK TPT VDV T V P EAELSVE TP EIN I 4781
Cdd:pfam05109 503 ap D MTS P TSAVT TP TPNATSPT P AVTTPT P NATS P T ------- L G KT SP TSAVT TPT PNA T S P TPAVTTP TP NAT I 571
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
