|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
210-433 |
1.74e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 105.09 E-value: 1.74e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALV--DQNKYKDAANLLNDALAIrektl 287
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAylRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 288 gkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRekvlgkdhPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIy 367
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2033748996 368 qtklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREE 433
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
212-415 |
5.16e-20 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 94.22 E-value: 5.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 212 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD--HPDVATMLNILA--LVDQNKYKDAANLLNDALAIREKTL 287
Cdd:NF040586 433 TLRLRFHLANALRSLGRYEEARELDEDTLERQRRVLGLGedHPHTLMTAGGLGadLRALGRFREALELDEETLERHRRVF 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 288 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 367
Cdd:NF040586 513 GEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERY 592
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2033748996 368 QTKL-GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRaHEREFG 415
Cdd:NF040586 593 REVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYER-YRRRFG 640
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
294-368 |
5.35e-19 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 81.28 E-value: 5.35e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2033748996 294 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 368
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
226-419 |
1.07e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 89.98 E-value: 1.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 226 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALV--DQNKYKDAANLLNDALAI--REKTLGKDHPAVAATLNNL 301
Cdd:NF040586 405 RGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANAlrSLGRYEEARELDEDTLERqrRVLGLGEDHPHTLMTAGGL 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 302 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 381
Cdd:NF040586 485 GADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLS 564
|
170 180 190
....*....|....*....|....*....|....*...
gi 2033748996 382 KNNLASCYLKQGKFKQAETLYKEILTRaHEREFGSVDD 419
Cdd:NF040586 565 ANNLARDLRELGRYAEALDLLEEALER-YREVLGGPDH 601
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
210-412 |
2.28e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 88.82 E-value: 2.28e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILA--LVDQNKYKDAANLLNDALAIREKTL 287
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLArdLRELGRYAEALDLLEEALERYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 288 -GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD-VAKQLnNLALLCQNQGKYEEVEYYYQRALE 365
Cdd:NF040586 597 gGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAAL-SLANDLRALGDADEARELAREVLD 675
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2033748996 366 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAEtlykEILTRAHER 412
Cdd:NF040586 676 RYRRVLGEDHPFTLACRNNLAVLLRALGDPEEAR----ELAEAALEG 718
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
205-412 |
6.59e-17 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 84.20 E-value: 6.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 205 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD-VATML---NILALVDQNKykDAANLLNDAL 280
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALslaNDLRALGDAD--EARELAREVL 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 281 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP---DVAKQL-NNLALLCQNQGKYEEV 356
Cdd:NF040586 675 DRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLaNDLAALGDLDAALGEE 754
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2033748996 357 EYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 412
Cdd:NF040586 755 ALERLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRV 810
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
205-412 |
1.17e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 83.43 E-value: 1.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 205 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT-SGHDHPDVATMLNILA--LVDQNKYKDAANLLNDALA 281
Cdd:NF040586 554 LGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAvaLRRAGRLEEALELAEDTYE 633
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 282 IREKTLGKDHP-AVAATLnNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 360
Cdd:NF040586 634 RYRRRFGPDHPdTLAAAL-SLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELA 712
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2033748996 361 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA--ETLYKEILTRAHER 412
Cdd:NF040586 713 EAALEGLRERLGPDHPYTLAAAVNLANDLAALGDLDAAlgEEALERLRRLLGED 766
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
218-336 |
3.33e-10 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 63.01 E-value: 3.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 218 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLNiLA--LVDQNKYKDAanLLNDALAIREKTLGK----- 289
Cdd:NF040586 694 NLAVLLRALGDPEEARELAEAALEGLRERLGPDHPyTLAAAVN-LAndLAALGDLDAA--LGEEALERLRRLLGEdlrag 770
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2033748996 290 -DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 336
Cdd:NF040586 771 pDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGPDHPDT 818
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
211-403 |
2.94e-08 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 54.65 E-value: 2.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 211 ARLRTlhNLVIQYASQGRYEvavplckQALEDLEKTSGHDhPDVATMLNILALVDQ---------NKYKDAANLlndala 281
Cdd:TIGR02521 31 AKIRV--QLALGYLEQGDLE-------VAKENLDKALEHD-PDDYLAYLALALYYQqlgelekaeDSFRRALTL------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 282 irektlgkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEirekvlGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 361
Cdd:TIGR02521 95 ---------NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2033748996 362 RALEIyqtklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYK 403
Cdd:TIGR02521 160 RALQI--------DPQRPESLLELAELYYLRGQYKDARAYLE 193
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
304-418 |
6.76e-08 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 55.31 E-value: 6.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 304 LYgKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV---------------------EY---- 358
Cdd:NF040586 402 LY-LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAreldedtlerqrrvlglgedhPHtlmt 480
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2033748996 359 ------------YYQRALEI-------YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRaHEREFGSVD 418
Cdd:NF040586 481 agglgadlralgRFREALELdeetlerHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRR-RRRVLGPDH 558
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
35-149 |
1.54e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 35 LEALKNEHNSILQSLLET-LKCLKKDDESNLVEEKSNMIRKSLEMLELGLSEAQ-VMMALSNHLNAVESEKQKLRAQVRR 112
Cdd:TIGR02168 234 LEELREELEELQEELKEAeEELEELTAELQELEEKLEELRLEVSELEEEIEELQkELYALANEISRLEQQKQILRERLAN 313
|
90 100 110
....*....|....*....|....*....|....*..
gi 2033748996 113 LCQENQWLRDELANTQQKLQKSEQSVAQLEEEKKHLE 149
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
295-327 |
8.40e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.04 E-value: 8.40e-04
10 20 30
....*....|....*....|....*....|...
gi 2033748996 295 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 327
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
29-161 |
1.75e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 40.77 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 29 KQVIQGLEALKNEHNSILQSLLETLkclkkDDESNLVEEKSNMIRKSLEMLElglSEAQVMMALSNHLNAV-ESEKQKLR 107
Cdd:smart00787 139 MKLLEGLKEGLDENLEGLKEDYKLL-----MKELELLNSIKPKLRDRKDALE---EELRQLKQLEDELEDCdPTELDRAK 210
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2033748996 108 AQVRRLCQENQWLRDELANTQQKLQKSEQSVAQLEEEKkhLEFMNQLKKYDDDI 161
Cdd:smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKK--SELNTEIAEAEKKL 262
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
293-414 |
2.50e-03 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 40.02 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 293 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPdvAKQ---LNNLA----LLCQNQGKYEEVEYY------ 359
Cdd:cd24145 145 EVGAFLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQAN--CHSlvlMNNEAaelaLHALRKPLSSTLIEAsrlpqk 222
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2033748996 360 ------------YQRALEIYQTKLGPD-----DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 414
Cdd:cd24145 223 srdqlleaalkwAQKALDVAKSIKPKDrdpecDQACALALYNLGVIAEMLGNLDEARKLYKEAISLAKELGF 294
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
218-296 |
4.25e-03 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 39.90 E-value: 4.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 218 NLVIQYASQGRYEVAvpLCKQALEDLE------KTSGHDHPDV-ATMLNiLALVDQNKY--KDAANLLNDALAIREKTLG 288
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRrllgedLRAGPDHPDTlACAAN-LALDLRATGrtEEAEELRADTLARLRRVLG 812
|
....*...
gi 2033748996 289 KDHPAVAA 296
Cdd:NF040586 813 PDHPDTVA 820
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
210-433 |
1.74e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 105.09 E-value: 1.74e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALV--DQNKYKDAANLLNDALAIrektl 287
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAylRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 288 gkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRekvlgkdhPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIy 367
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2033748996 368 qtklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREE 433
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
208-409 |
2.20e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 95.06 E-value: 2.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 208 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVDQNKYKDAANLLNDALAIrektl 287
Cdd:COG3914 33 EAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL----- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 288 gkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIy 367
Cdd:COG3914 108 ---NPDNAEALFNLGNLLLALGRLEEALAALRRALAL--------NPDFAEAYLNLGEALRRLGRLEEAIAALRRALEL- 175
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2033748996 368 qtklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 409
Cdd:COG3914 176 -------DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
212-415 |
5.16e-20 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 94.22 E-value: 5.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 212 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD--HPDVATMLNILA--LVDQNKYKDAANLLNDALAIREKTL 287
Cdd:NF040586 433 TLRLRFHLANALRSLGRYEEARELDEDTLERQRRVLGLGedHPHTLMTAGGLGadLRALGRFREALELDEETLERHRRVF 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 288 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 367
Cdd:NF040586 513 GEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERY 592
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2033748996 368 QTKL-GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRaHEREFG 415
Cdd:NF040586 593 REVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYER-YRRRFG 640
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
294-368 |
5.35e-19 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 81.28 E-value: 5.35e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2033748996 294 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 368
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
226-419 |
1.07e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 89.98 E-value: 1.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 226 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALV--DQNKYKDAANLLNDALAI--REKTLGKDHPAVAATLNNL 301
Cdd:NF040586 405 RGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANAlrSLGRYEEARELDEDTLERqrRVLGLGEDHPHTLMTAGGL 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 302 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 381
Cdd:NF040586 485 GADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLS 564
|
170 180 190
....*....|....*....|....*....|....*...
gi 2033748996 382 KNNLASCYLKQGKFKQAETLYKEILTRaHEREFGSVDD 419
Cdd:NF040586 565 ANNLARDLRELGRYAEALDLLEEALER-YREVLGGPDH 601
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
210-412 |
2.28e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 88.82 E-value: 2.28e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILA--LVDQNKYKDAANLLNDALAIREKTL 287
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLArdLRELGRYAEALDLLEEALERYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 288 -GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD-VAKQLnNLALLCQNQGKYEEVEYYYQRALE 365
Cdd:NF040586 597 gGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAAL-SLANDLRALGDADEARELAREVLD 675
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2033748996 366 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAEtlykEILTRAHER 412
Cdd:NF040586 676 RYRRVLGEDHPFTLACRNNLAVLLRALGDPEEAR----ELAEAALEG 718
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
205-412 |
6.59e-17 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 84.20 E-value: 6.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 205 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD-VATML---NILALVDQNKykDAANLLNDAL 280
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALslaNDLRALGDAD--EARELAREVL 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 281 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP---DVAKQL-NNLALLCQNQGKYEEV 356
Cdd:NF040586 675 DRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLaNDLAALGDLDAALGEE 754
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2033748996 357 EYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 412
Cdd:NF040586 755 ALERLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRV 810
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
205-412 |
1.17e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 83.43 E-value: 1.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 205 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT-SGHDHPDVATMLNILA--LVDQNKYKDAANLLNDALA 281
Cdd:NF040586 554 LGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAvaLRRAGRLEEALELAEDTYE 633
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 282 IREKTLGKDHP-AVAATLnNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 360
Cdd:NF040586 634 RYRRRFGPDHPdTLAAAL-SLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELA 712
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2033748996 361 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA--ETLYKEILTRAHER 412
Cdd:NF040586 713 EAALEGLRERLGPDHPYTLAAAVNLANDLAALGDLDAAlgEEALERLRRLLGED 766
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
335-409 |
8.67e-15 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 69.34 E-value: 8.67e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2033748996 335 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 409
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALA 75
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
253-327 |
1.86e-14 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 68.57 E-value: 1.86e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2033748996 253 DVATMLNILALV--DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 327
Cdd:pfam13424 1 DVATALNNLAAVlrRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
294-335 |
4.30e-14 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 66.37 E-value: 4.30e-14
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2033748996 294 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD 335
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
210-411 |
4.93e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 72.45 E-value: 4.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEdlektSGHDHPDVATMLnILALVDQNKYKDAANLLNDALAIrektlgk 289
Cdd:COG2956 73 PDRAEALLELAQDYLKAGLLDRAEELLEKLLE-----LDPDDAEALRLL-AEIYEQEGDWEKAIEVLERLLKL------- 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 290 dHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIyqt 369
Cdd:COG2956 140 -GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCARALLLLAELYLEQGDYEEAIAALERALEQ--- 207
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2033748996 370 klgpdDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 411
Cdd:COG2956 208 -----DPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS 244
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
216-412 |
8.82e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 74.26 E-value: 8.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 216 LHNLVIQYASQGRYEVAVPLCKQALEDLEktsgHDHPDVATMLNILALVDQNKYKDAANLLNDALAIREKTLGKDHPAVA 295
Cdd:COG3914 3 AAALLALAALAAAALLAAAAAAELALAAE----LEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 296 ATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIyqtklgpdD 375
Cdd:COG3914 79 ALLELAALLLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALAL--------N 142
|
170 180 190
....*....|....*....|....*....|....*..
gi 2033748996 376 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 412
Cdd:COG3914 143 PDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDN 179
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
261-411 |
2.42e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.44 E-value: 2.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 261 LALVDQNKYKDAANLLNDALairektlgKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAKQL 340
Cdd:COG4783 12 QALLLAGDYDEAEALLEKAL--------ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL--------DPDEPEAR 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2033748996 341 NNLALLCQNQGKYEEVEYYYQRALeiyqtKLGPDDPNVAktkNNLASCYLKQGKFKQAETLYKEILTRAHE 411
Cdd:COG4783 76 LNLGLALLKAGDYDEALALLEKAL-----KLDPEHPEAY---LRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
250-409 |
5.18e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 63.83 E-value: 5.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 250 DHPDVATMLNILALVDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvl 329
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL----- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 330 gkdHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIyqtklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 409
Cdd:COG5010 84 ---DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
223-411 |
6.75e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 66.29 E-value: 6.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 223 YASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALV--DQNKYKDAANLLNDALAIREKTlgkdhpavAATLNN 300
Cdd:COG2956 52 YRRRGEYDRAIRIHQKLLER--------DPDRAEALLELAQDylKAGLLDRAEELLEKLLELDPDD--------AEALRL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 301 LAVLYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIyqtklgpdDPNVAK 380
Cdd:COG2956 116 LAEIYEQEGDWEKAIEVLERLLKL--------GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCAR 179
|
170 180 190
....*....|....*....|....*....|.
gi 2033748996 381 TKNNLASCYLKQGKFKQAETLYKEILTRAHE 411
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQDPD 210
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
212-285 |
9.94e-12 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 60.86 E-value: 9.94e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2033748996 212 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALV--DQNKYKDAANLLNDALAIREK 285
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLylELGRYEEALELLERALALAEK 77
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
304-406 |
1.38e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.95 E-value: 1.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 304 LYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAKQLNNLALLCQNQGKYEEVEYYyQRALEIyqtklgpdDPNVAKTKN 383
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|...
gi 2033748996 384 NLASCYLKQGKFKQAETLYKEIL 406
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERAL 86
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
211-367 |
2.10e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 61.75 E-value: 2.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 211 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILA--LVDQNKYKDAANLLNDALAIrektlg 288
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGeiLLQLGDLDEAIVLLHEALEL------ 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2033748996 289 kdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEirekvLGKDHPDVakqLNNLALLCQNQGKYEEVEYYYQRALEIY 367
Cdd:COG4783 68 --DPDEPEARLNLGLALLKAGDYDEALALLEKALK-----LDPEHPEA---YLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
293-409 |
1.49e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.44 E-value: 1.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 293 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYqtklg 372
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD----- 68
|
90 100 110
....*....|....*....|....*....|....*..
gi 2033748996 373 PDDPNVAktkNNLASCYLKQGKFKQAETLYKEILTRA 409
Cdd:COG4783 69 PDEPEAR---LNLGLALLKAGDYDEALALLEKALKLD 102
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
218-336 |
3.33e-10 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 63.01 E-value: 3.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 218 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLNiLA--LVDQNKYKDAanLLNDALAIREKTLGK----- 289
Cdd:NF040586 694 NLAVLLRALGDPEEARELAEAALEGLRERLGPDHPyTLAAAVN-LAndLAALGDLDAA--LGEEALERLRRLLGEdlrag 770
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2033748996 290 -DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 336
Cdd:NF040586 771 pDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGPDHPDT 818
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
261-413 |
3.63e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.90 E-value: 3.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 261 LALVDQNKYKDAANLLNDALAIrektlgkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAKQL 340
Cdd:COG2956 16 LNYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER--------DPDRAEAL 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2033748996 341 NNLALLCQNQGKYEEVEYYYQRALEIyqtklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 413
Cdd:COG2956 80 LELAQDYLKAGLLDRAEELLEKLLEL--------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENA 144
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
262-366 |
6.00e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 56.33 E-value: 6.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 262 ALVDQNKYKDAANLLNDALAIrektlgkdHPAVAATLNNLAVLYGKRGKYKEAEPLcKRALEIrekvlgkdHPDVAKQLN 341
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|....*
gi 2033748996 342 NLALLCQNQGKYEEVEYYYQRALEI 366
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALEL 88
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
289-409 |
2.23e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.78 E-value: 2.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 289 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRekvlgkdhPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIyq 368
Cdd:COG4235 11 AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALAL-- 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2033748996 369 tklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 409
Cdd:COG4235 81 ------DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
261-478 |
6.47e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 58.47 E-value: 6.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 261 LALVDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKdHPDVAKQL 340
Cdd:COG3914 3 AAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAA-LLLLAALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 341 NNLALLCQNQGKYEEVEYYYQRALEIyqtklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYKEILtraherefgSVDDE 420
Cdd:COG3914 82 ELAALLLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRAL---------ALNPD 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2033748996 421 NKPIWM----------HAEEREECkgkqkdgtsfgeyggWYKACKVDsPTVTTTLKNLGALYRRQGKF 478
Cdd:COG3914 145 FAEAYLnlgealrrlgRLEEAIAA---------------LRRALELD-PDNAEALNNLGNALQDLGRL 196
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
210-368 |
2.03e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 55.40 E-value: 2.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALV--DQNKYKDAANLLNDALAIRektl 287
Cdd:COG0457 73 PDDAEALNNLGLALQALGRYEEALEDYDKALEL--------DPDDAEALYNLGLAllELGRYDEAIEAYERALELD---- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 288 gkdhPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 367
Cdd:COG0457 141 ----PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
.
gi 2033748996 368 Q 368
Cdd:COG0457 217 A 217
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
211-403 |
2.94e-08 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 54.65 E-value: 2.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 211 ARLRTlhNLVIQYASQGRYEvavplckQALEDLEKTSGHDhPDVATMLNILALVDQ---------NKYKDAANLlndala 281
Cdd:TIGR02521 31 AKIRV--QLALGYLEQGDLE-------VAKENLDKALEHD-PDDYLAYLALALYYQqlgelekaeDSFRRALTL------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 282 irektlgkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEirekvlGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 361
Cdd:TIGR02521 95 ---------NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2033748996 362 RALEIyqtklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYK 403
Cdd:TIGR02521 160 RALQI--------DPQRPESLLELAELYYLRGQYKDARAYLE 193
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
261-432 |
3.04e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 54.54 E-value: 3.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 261 LALVDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRekvlgkdhPDVAKQL 340
Cdd:COG4785 39 IALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLAEAY 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 341 NNLALLCQNQGKYEEVEYYYQRALEIyqtklgpdDPNVAKTKNNLASCYLKQGKFKQAEtlykEILTRAHerEFGSVDDE 420
Cdd:COG4785 111 NNRGLAYLLLGDYDAALEDFDRALEL--------DPDYAYAYLNRGIALYYLGRYELAI----ADLEKAL--ELDPNDPE 176
|
170
....*....|..
gi 2033748996 421 NkPIWMHAEERE 432
Cdd:COG4785 177 R-ALWLYLAERK 187
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
307-408 |
4.87e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.15 E-value: 4.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 307 KRGKYKEAEPLCKRALEirekvLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYqtklgPDDPNVAKTKNNLA 386
Cdd:COG1729 5 KAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY-----PDSPKAPDALLKLG 74
|
90 100
....*....|....*....|..
gi 2033748996 387 SCYLKQGKFKQAETLYKEILTR 408
Cdd:COG1729 75 LSYLELGDYDKARATLEELIKK 96
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
304-418 |
6.76e-08 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 55.31 E-value: 6.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 304 LYgKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV---------------------EY---- 358
Cdd:NF040586 402 LY-LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAreldedtlerqrrvlglgedhPHtlmt 480
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2033748996 359 ------------YYQRALEI-------YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRaHEREFGSVD 418
Cdd:NF040586 481 agglgadlralgRFREALELdeetlerHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRR-RRRVLGPDH 558
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
254-292 |
4.20e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 46.34 E-value: 4.20e-07
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2033748996 254 VATMLNILALV--DQNKYKDAANLLNDALAIREKTLGKDHP 292
Cdd:pfam13374 1 TASSLNNLANAlrAQGRYDEAEELLEEALAIRERVLGPDHP 41
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
336-377 |
4.64e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 46.34 E-value: 4.64e-07
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2033748996 336 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN 377
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
223-329 |
6.16e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.47 E-value: 6.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 223 YASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILA--LVDQNKYKDAANLlNDALAIrektlgkdHPAVAATLNN 300
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGllLLEQGRYDEAIAL-EKALKL--------DPNNAEALLN 64
|
90 100
....*....|....*....|....*....
gi 2033748996 301 LAVLYGKRGKYKEAEPLCKRALEIREKVL 329
Cdd:COG3063 65 LAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
213-253 |
6.41e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 45.96 E-value: 6.41e-07
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2033748996 213 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD 253
Cdd:pfam13374 2 ASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
261-387 |
2.30e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.52 E-value: 2.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 261 LALVDQNKYKDAANLLNDALAirektLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEirekvLGKDHPDVAKQL 340
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLK-----RYPDSPKAPDAL 70
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 2033748996 341 NNLALLCQNQGKYEEVEYYYQRALEIYqtklgPDDPNVAKTKNNLAS 387
Cdd:COG1729 71 LKLGLSYLELGDYDKARATLEELIKKY-----PDSEAAKEARARLAR 112
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
210-367 |
4.43e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.57 E-value: 4.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEktsghDHPDVATMLNILALvDQNKYKDAANLLNDALAIrektlgk 289
Cdd:COG2956 141 PENAHAYCELAELYLEQGDYDEAIEALEKALKLDP-----DCARALLLLAELYL-EQGDYEEAIAALERALEQ------- 207
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2033748996 290 dHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAkQLNNLALLCQNQGKYEEVEYYYQRALEIY 367
Cdd:COG2956 208 -DPDYLPALPRLAELYEKLGDPEEALELLRKALEL--------DPSDD-LLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
238-407 |
8.07e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.93 E-value: 8.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 238 QALEDLEKTSGHDHPdVATMLNILALvDQNKYKDAANLLNDALairektlgKDHPAVAATLNNLAVLYGKRgKYKEAEPL 317
Cdd:TIGR02917 757 KTLEAWLKTHPNDAV-LRTALAELYL-AQKDYDKAIKHYQTVV--------KKAPDNAVVLNNLAWLYLEL-KDPRALEY 825
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 318 CKRALEIRekvlgkdhPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIyqtklGPDDPNVaktKNNLASCYLKQGKFKQ 397
Cdd:TIGR02917 826 AERALKLA--------PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI-----APEAAAI---RYHLALALLATGRKAE 889
|
170
....*....|
gi 2033748996 398 AETLYKEILT 407
Cdd:TIGR02917 890 ARKELDKLLN 899
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
176-324 |
8.80e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.11 E-value: 8.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 176 LDDLFPNDEDDPGQGIQQQHSSAAAAAQQGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEdlektsghDHPDVA 255
Cdd:COG5010 17 LTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ--------LDPNNP 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2033748996 256 TMLNILALV--DQNKYKDAANLLNDALAIrektlgkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 324
Cdd:COG5010 89 ELYYNLALLysRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
210-365 |
1.15e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 46.83 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEdlektsghDHPDVATMLNIL--ALVDQNKYKDAANLLNDALAIRektl 287
Cdd:COG4785 70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALE--------LDPDLAEAYNNRglAYLLLGDYDAALEDFDRALELD---- 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 288 gkdhPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK----------VLGKDHPDVAKQL--NNLALLCQNQGKYEE 355
Cdd:COG4785 138 ----PDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNdperalwlylAERKLDPEKALALllEDWATAYLLQGDTEE 213
|
170
....*....|
gi 2033748996 356 VEYYYQRALE 365
Cdd:COG4785 214 ARELFKLALA 223
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
261-324 |
1.33e-05 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 43.09 E-value: 1.33e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2033748996 261 LALVDQNKYKDAANLLNDALAirektLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 324
Cdd:pfam13432 5 RAALRAGDYDDAAAALEAALA-----RFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRA 63
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
319-411 |
2.20e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.23 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 319 KRALEIREKVlgKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEiyqtkLGPDDPNVaktKNNLASCYLKQGKFKQA 398
Cdd:COG4235 1 EAIARLRQAL--AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALR-----LDPDNADA---LLDLAEALLAAGDTEEA 70
|
90
....*....|...
gi 2033748996 399 ETLYKEILTRAHE 411
Cdd:COG4235 71 EELLERALALDPD 83
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
210-324 |
3.96e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.46 E-value: 3.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEktsghDHPDVATMLnILALVDQNKYKDAANLLNDALAIrektlgk 289
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP-----DNADALLDL-AEALLAAGDTEEAEELLERALAL------- 80
|
90 100 110
....*....|....*....|....*....|....*
gi 2033748996 290 dHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 324
Cdd:COG4235 81 -DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
237-409 |
4.02e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 46.62 E-value: 4.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 237 KQALEDLEKTSGHDHPDVATMLNILAL--VDQNKYKDAANLLNDALAIREKTLgkdhPAVAAtlnnLAVLYGKRGKYKEA 314
Cdd:TIGR02917 107 QQVLDELPGKTLLDDEGAAELLALRGLayLGLGQLELAQKSYEQALAIDPRSL----YAKLG----LAQLALAENRFDEA 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 315 EPLCKRALEIrekvlgkdHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIyqtklgpdDPNVAKTKNNLASCYLKQGK 394
Cdd:TIGR02917 179 RALIDEVLTA--------DPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL--------RPNNIAVLLALATILIEAGE 242
|
170
....*....|....*
gi 2033748996 395 FKQAETLYKEILTRA 409
Cdd:TIGR02917 243 FEEAEKHADALLKKA 257
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
35-149 |
1.54e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 35 LEALKNEHNSILQSLLET-LKCLKKDDESNLVEEKSNMIRKSLEMLELGLSEAQ-VMMALSNHLNAVESEKQKLRAQVRR 112
Cdd:TIGR02168 234 LEELREELEELQEELKEAeEELEELTAELQELEEKLEELRLEVSELEEEIEELQkELYALANEISRLEQQKQILRERLAN 313
|
90 100 110
....*....|....*....|....*....|....*..
gi 2033748996 113 LCQENQWLRDELANTQQKLQKSEQSVAQLEEEKKHLE 149
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
295-327 |
1.64e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.94 E-value: 1.64e-04
10 20 30
....*....|....*....|....*....|...
gi 2033748996 295 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 327
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
271-406 |
1.78e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.98 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 271 DAANLLNDALAIREKTLGKdhpavaATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 350
Cdd:COG4785 13 ALAAAAASKAAILLAALLF------AAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSL 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2033748996 351 GKYEEVEYYYQRALEIyqtklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 406
Cdd:COG4785 87 GDYDLAIADFDQALEL--------DPDLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
297-332 |
2.24e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 38.68 E-value: 2.24e-04
10 20 30
....*....|....*....|....*....|....*.
gi 2033748996 297 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 332
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
337-369 |
2.48e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.56 E-value: 2.48e-04
10 20 30
....*....|....*....|....*....|...
gi 2033748996 337 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 369
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
300-376 |
2.74e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 39.24 E-value: 2.74e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2033748996 300 NLAVLYGKRGKYKEAEPLCKRALEirekvLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYqtklgPDDP 376
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALA-----RFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAA-----PGDP 68
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
210-324 |
4.55e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.56 E-value: 4.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEdlektsghDHPDVATMLNILA--LVDQNKYKDAANLLNDALAirektL 287
Cdd:COG4783 35 PDNPEAFALLGEILLQLGDLDEAIVLLHEALE--------LDPDEPEARLNLGlaLLKAGDYDEALALLEKALK-----L 101
|
90 100 110
....*....|....*....|....*....|....*..
gi 2033748996 288 GKDHPAVaatLNNLAVLYGKRGKYKEAEPLCKRALEI 324
Cdd:COG4783 102 DPEHPEA---YLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
210-426 |
7.52e-04 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 41.91 E-value: 7.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKtsgHDHPDVATM-LNILA--LVDQNKYKDAANLLNDALAIREKT 286
Cdd:pfam17874 37 LARGLATFVLGEAYLCLGDLDAALQAMREAEALARR---ADSPHVTLWaLLQQGeiLRAQGRLHQALETYQQALQLARDH 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 287 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVlgkdHPDVAKQLNN-LALLCQNQGKYEEVEYYYQRALE 365
Cdd:pfam17874 114 GLQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQW----EPDAAVDAYVlLARIALAQGELEEALTLLRRAEL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 366 IYQTK----------------------------------LGPDDPN---VAKTKNNLASCYLKQGKFKQAETLYKEILTR 408
Cdd:pfam17874 190 LARQSffhvdwlanaervrvrlwlargdlraavrwlraaEPPSDADnhfLERELRNLARVLLALGRFDDALSLLERLQNL 269
|
250
....*....|....*...
gi 2033748996 409 AheREFGSVDDENKpIWM 426
Cdd:pfam17874 270 A--EQLGRVRSLIE-NLI 284
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
295-327 |
8.40e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.04 E-value: 8.40e-04
10 20 30
....*....|....*....|....*....|...
gi 2033748996 295 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 327
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
29-161 |
1.75e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 40.77 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 29 KQVIQGLEALKNEHNSILQSLLETLkclkkDDESNLVEEKSNMIRKSLEMLElglSEAQVMMALSNHLNAV-ESEKQKLR 107
Cdd:smart00787 139 MKLLEGLKEGLDENLEGLKEDYKLL-----MKELELLNSIKPKLRDRKDALE---EELRQLKQLEDELEDCdPTELDRAK 210
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2033748996 108 AQVRRLCQENQWLRDELANTQQKLQKSEQSVAQLEEEKkhLEFMNQLKKYDDDI 161
Cdd:smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKK--SELNTEIAEAEKKL 262
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
293-414 |
2.50e-03 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 40.02 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 293 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPdvAKQ---LNNLA----LLCQNQGKYEEVEYY------ 359
Cdd:cd24145 145 EVGAFLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQAN--CHSlvlMNNEAaelaLHALRKPLSSTLIEAsrlpqk 222
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2033748996 360 ------------YQRALEIYQTKLGPD-----DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 414
Cdd:cd24145 223 srdqlleaalkwAQKALDVAKSIKPKDrdpecDQACALALYNLGVIAEMLGNLDEARKLYKEAISLAKELGF 294
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
337-369 |
3.14e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.50 E-value: 3.14e-03
10 20 30
....*....|....*....|....*....|...
gi 2033748996 337 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 369
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
218-296 |
4.25e-03 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 39.90 E-value: 4.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 218 NLVIQYASQGRYEVAvpLCKQALEDLE------KTSGHDHPDV-ATMLNiLALVDQNKY--KDAANLLNDALAIREKTLG 288
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRrllgedLRAGPDHPDTlACAAN-LALDLRATGrtEEAEELRADTLARLRRVLG 812
|
....*...
gi 2033748996 289 KDHPAVAA 296
Cdd:NF040586 813 PDHPDTVA 820
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
262-411 |
4.80e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 39.12 E-value: 4.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 262 ALVDQNKYKDAANLLNDALairektlgKDHPAVAatlnnLAVLYGkRGKYKEAEPLCKRAleirEKVLgKDHPDVAKQLN 341
Cdd:COG3071 202 ALIALGDHDEAERLLREAL--------KRQWDPR-----LVRLYG-RLQGGDPAKQLKRA----EKWL-KKHPNDPDLLL 262
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 342 NLALLCQNQGKYEEVEYYYQRALeiyqtKLGPDdpnvAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 411
Cdd:COG3071 263 ALGRLCLRNQLWGKAREYLEAAL-----ALRPS----AEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
378-415 |
5.81e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 34.79 E-value: 5.81e-03
10 20 30
....*....|....*....|....*....|....*...
gi 2033748996 378 VAKTKNNLASCYLKQGKFKQAETLYKEILTRaHEREFG 415
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAI-RERVLG 37
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
252-369 |
7.54e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 39.20 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748996 252 PDVATMLNILaLVDQNKYKDAANLLNDALAIREKTLGKdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgk 331
Cdd:TIGR00990 467 PDVYNYYGEL-LLDQNKFDEAIEKFDTAIELEKETKPM-YMNVLPLINKALALFQWKQDFIEAENLCEKALII------- 537
|
90 100 110
....*....|....*....|....*....|....*...
gi 2033748996 332 dHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 369
Cdd:TIGR00990 538 -DPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
337-367 |
8.21e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.04 E-value: 8.21e-03
10 20 30
....*....|....*....|....*....|.
gi 2033748996 337 AKQLNNLALLCQNQGKYEEVEYYYQRALEIY 367
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELD 31
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
350-406 |
8.50e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 34.87 E-value: 8.50e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 2033748996 350 QGKYEEVEYYYQRALEIYqtklgPDDPNVaktKNNLASCYLKQGKFKQAETLYKEIL 406
Cdd:pfam14559 1 EGDYAEALELLEQALAED-----PDNAEA---RLGLAEALLALGRLDEAEALLAALP 49
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
342-409 |
9.35e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 35.00 E-value: 9.35e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2033748996 342 NLALLCQNQGKYEEVEYYYQRALeiyqtKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 409
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAAL-----ARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAA 64
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