NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1972266108|ref|NP_001379434|]
View 

Myosin_tail_1 domain-containing protein [Caenorhabditis elegans]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 5-304 8.63e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 63.80  E-value: 8.63e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   5 AEIEALEKKCKELEENHKREEEARKKYADELRAKIDQYEETKAAHERDRMLLDKRNKEIEELNRNLKAESEsnyenaKKA 84
Cdd:COG1196   232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ------DIA 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  85 SELERLRekekkewdekerrmqmEAENEANQHKTQTEKLKDQISTLQTDFEKVSAQRKAQEQMNAELVDEVASFKQKAER 164
Cdd:COG1196   306 RLEERRR----------------ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108 165 AEEQKKKLVEDLDSLDDKLAAEKRANNEHVKHNKKLEGQLKATQTQLTLALKEKHEFDVDCKRRESEIGELKLKAQGDAN 244
Cdd:COG1196   370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108 245 LISKLQAMLRKCISRIEELEEDLLEERKLRMKAERQFNELRSEYEVLQEQMAEASGQLTA 304
Cdd:COG1196   450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 5-304 8.63e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 63.80  E-value: 8.63e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   5 AEIEALEKKCKELEENHKREEEARKKYADELRAKIDQYEETKAAHERDRMLLDKRNKEIEELNRNLKAESEsnyenaKKA 84
Cdd:COG1196   232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ------DIA 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  85 SELERLRekekkewdekerrmqmEAENEANQHKTQTEKLKDQISTLQTDFEKVSAQRKAQEQMNAELVDEVASFKQKAER 164
Cdd:COG1196   306 RLEERRR----------------ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108 165 AEEQKKKLVEDLDSLDDKLAAEKRANNEHVKHNKKLEGQLKATQTQLTLALKEKHEFDVDCKRRESEIGELKLKAQGDAN 244
Cdd:COG1196   370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108 245 LISKLQAMLRKCISRIEELEEDLLEERKLRMKAERQFNELRSEYEVLQEQMAEASGQLTA 304
Cdd:COG1196   450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 5-297 1.66e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 56.60  E-value: 1.66e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108    5 AEIEALEKKCKELEENHKREEEARKKYADELRAKIDQYEETKAAHERDRMLLDKRNKEIEELNRNLKAESESNYENAKKA 84
Cdd:TIGR02168  684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   85 SELERLREKEKKEWDEKERRMQmEAENEANQHKTQTEKLKDQISTLQTDFEKVSAQRKAQEQMNAELVDEVASFKQKAER 164
Cdd:TIGR02168  764 EELEERLEEAEEELAEAEAEIE-ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED 842

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  165 AEEQKKKLVEDLDSLDDKLAAEKRANNEHVKHNKKLEGQLKATQTQLTLALKEKHEFDVDCKRRESEIGELKLKAQGDAN 244
Cdd:TIGR02168  843 LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1972266108  245 LISKLQAMLrkcisrieeleedlleeRKLRMKAERQFNELRSEYEVLQEQMAE 297
Cdd:TIGR02168  923 KLAQLELRL-----------------EGLEVRIDNLQERLSEEYSLTLEEAEA 958
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 10-348 3.74e-07

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 52.48  E-value: 3.74e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   10 LEKKCKELEENHKREEEARKKYADELRAKIDQYEETkaahERDRMLLDKRNKEIEELNRNLKAESESNYENAKKaseler 89
Cdd:pfam01576   24 AESELKELEKKHQQLCEEKNALQEQLQAETELCAEA----EEMRARLAARKQELEEILHELESRLEEEEERSQQ------ 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   90 LREKEKKEWDEKERRMQMEAENEANQHKTQTEK---------LKDQISTLQTDFEKVSAQRKAQEQMNAELVDEVASFKQ 160
Cdd:pfam01576   94 LQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKvtteakikkLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEE 173

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  161 KAERAEEQKKKLVEDLDSLDDKLAAEKRANNEHVKHNKKLEGQLKATQTQLTLALKEKHEFDVDCKRRESEIGELKLKAQ 240
Cdd:pfam01576  174 KAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLE 253

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  241 GDANLISKLQAMLRKCISRIEELEEDLLEERKLRMKAERQFNELRSEYEVLQEQMAEASGQLTAEAHINKVRAEEVSNLR 320
Cdd:pfam01576  254 EETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELK 333

                          330       340
                   ....*....|....*....|....*...
gi 1972266108  321 RDLQKRNLNHEAYISDLCNMQYATVNNL 348
Cdd:pfam01576  334 KALEEETRSHEAQLQEMRQKHTQALEEL 361
46 PHA02562
endonuclease subunit; Provisional
 4-223 2.36e-04

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 43.08  E-value: 2.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   4 NAEIEALEKKCKELEEN----HKREEEARKKYADELRAKIDQYEETKAAHERDRMLLDKRNKEIEELNRNLKAESES--- 76
Cdd:PHA02562  180 NQQIQTLDMKIDHIQQQiktyNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAAlnk 259

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  77 -NYENAKKASELERLrekekkewdekERRMQMEAENEANQHKTQT--------EKLKDQISTLQTDFEKVS-AQRKAQEQ 146
Cdd:PHA02562  260 lNTAAAKIKSKIEQF-----------QKVIKMYEKGGVCPTCTQQisegpdriTKIKDKLKELQHSLEKLDtAIDELEEI 328

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108 147 MNaELVDEVASFKQKAERAEEQKKKLVEDLDSLDDKLAAEKRANNEHVKHN---KKLEGQLKATQTQLTLALKEKHEFDV 223
Cdd:PHA02562  329 MD-EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAeelAKLQDELDKIVKTKSELVKEKYHRGI 407
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 5-304 8.63e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 63.80  E-value: 8.63e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   5 AEIEALEKKCKELEENHKREEEARKKYADELRAKIDQYEETKAAHERDRMLLDKRNKEIEELNRNLKAESEsnyenaKKA 84
Cdd:COG1196   232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ------DIA 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  85 SELERLRekekkewdekerrmqmEAENEANQHKTQTEKLKDQISTLQTDFEKVSAQRKAQEQMNAELVDEVASFKQKAER 164
Cdd:COG1196   306 RLEERRR----------------ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108 165 AEEQKKKLVEDLDSLDDKLAAEKRANNEHVKHNKKLEGQLKATQTQLTLALKEKHEFDVDCKRRESEIGELKLKAQGDAN 244
Cdd:COG1196   370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108 245 LISKLQAMLRKCISRIEELEEDLLEERKLRMKAERQFNELRSEYEVLQEQMAEASGQLTA 304
Cdd:COG1196   450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 5-297 1.66e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 56.60  E-value: 1.66e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108    5 AEIEALEKKCKELEENHKREEEARKKYADELRAKIDQYEETKAAHERDRMLLDKRNKEIEELNRNLKAESESNYENAKKA 84
Cdd:TIGR02168  684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   85 SELERLREKEKKEWDEKERRMQmEAENEANQHKTQTEKLKDQISTLQTDFEKVSAQRKAQEQMNAELVDEVASFKQKAER 164
Cdd:TIGR02168  764 EELEERLEEAEEELAEAEAEIE-ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED 842

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  165 AEEQKKKLVEDLDSLDDKLAAEKRANNEHVKHNKKLEGQLKATQTQLTLALKEKHEFDVDCKRRESEIGELKLKAQGDAN 244
Cdd:TIGR02168  843 LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1972266108  245 LISKLQAMLrkcisrieeleedlleeRKLRMKAERQFNELRSEYEVLQEQMAE 297
Cdd:TIGR02168  923 KLAQLELRL-----------------EGLEVRIDNLQERLSEEYSLTLEEAEA 958
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 4-222 1.57e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 53.40  E-value: 1.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   4 NAEIEALEKKCKELEENHKREEEARKKYADELRAKIDQYEETKAAHERDRMLLDKRNKEIEELNRNLKAESESNYENAKK 83
Cdd:COG1196   287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  84 ASELERLREKEKKEWDEKERRmQMEAENEANQHKTQTEKLKDQISTLQTDFEKVSAQRKAQEQMNAELVDEVASFKQKAE 163
Cdd:COG1196   367 LLEAEAELAEAEEELEELAEE-LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1972266108 164 RAEEQKKKLVEDLDSLDDKLAAEKRANNEHVKHNKKLEGQLKATQTQLTLALKEKHEFD 222
Cdd:COG1196   446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 16-325 2.84e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 52.63  E-value: 2.84e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  16 ELEENHKR-EEEARK--KYAdELRAKIDQYEETKAAHERDRML--LDKRNKEIEELNRNLKAESEsnyENAKKASELERL 90
Cdd:COG1196   197 ELERQLEPlERQAEKaeRYR-ELKEELKELEAELLLLKLRELEaeLEELEAELEELEAELEELEA---ELAELEAELEEL 272

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  91 REKekkewdekerrmQMEAENEANQHKTQTEKLKDQISTLQTDFEKVSAQRKAQEQMNAELVDEVASFKQKAERAEEQKK 170
Cdd:COG1196   273 RLE------------LEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108 171 KLVEDLDSLDDKLAAEKRANNEHVKHNKKLEGQLKATQTQLTLALKEKHEFDVDCKRRESEIGELKLKAQGDANLISKLQ 250
Cdd:COG1196   341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1972266108 251 AMLRKCISRIEELEEDLLEERKLRMKAERQFNELRSEYEVLQEQMAEASGQ--LTAEAHINKVRAEEVSNLRRDLQK 325
Cdd:COG1196   421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEaaLLEAALAELLEELAEAAARLLLLL 497
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 10-348 3.74e-07

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 52.48  E-value: 3.74e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   10 LEKKCKELEENHKREEEARKKYADELRAKIDQYEETkaahERDRMLLDKRNKEIEELNRNLKAESESNYENAKKaseler 89
Cdd:pfam01576   24 AESELKELEKKHQQLCEEKNALQEQLQAETELCAEA----EEMRARLAARKQELEEILHELESRLEEEEERSQQ------ 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   90 LREKEKKEWDEKERRMQMEAENEANQHKTQTEK---------LKDQISTLQTDFEKVSAQRKAQEQMNAELVDEVASFKQ 160
Cdd:pfam01576   94 LQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKvtteakikkLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEE 173

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  161 KAERAEEQKKKLVEDLDSLDDKLAAEKRANNEHVKHNKKLEGQLKATQTQLTLALKEKHEFDVDCKRRESEIGELKLKAQ 240
Cdd:pfam01576  174 KAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLE 253

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  241 GDANLISKLQAMLRKCISRIEELEEDLLEERKLRMKAERQFNELRSEYEVLQEQMAEASGQLTAEAHINKVRAEEVSNLR 320
Cdd:pfam01576  254 EETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELK 333

                          330       340
                   ....*....|....*....|....*...
gi 1972266108  321 RDLQKRNLNHEAYISDLCNMQYATVNNL 348
Cdd:pfam01576  334 KALEEETRSHEAQLQEMRQKHTQALEEL 361
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 59-337 1.03e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.66  E-value: 1.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   59 RNKEIEELNRNLkAESESNYENAKKasELERLREKEKkewdekerrmqmEAENEANQHKTQTEKLKDQISTLQTDFEKVS 138
Cdd:TIGR02168  675 RRREIEELEEKI-EELEEKIAELEK--ALAELRKELE------------ELEEELEQLRKELEELSRQISALRKDLARLE 739

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  139 AQRKAQEQMNAELVDEVASFKQKAERAEEQKKKLVEDLDSLDDKLAAEKRANNEHVKHNKKLEGQLKATQTQLTlalkek 218
Cdd:TIGR02168  740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT------ 813

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  219 hefdvdckRRESEIGELKLKAQGDANLISKLQAMLRKCISRIEELEEDLLE-------ERKLRMKAERQFNELRSEYEVL 291
Cdd:TIGR02168  814 --------LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESlaaeieeLEELIEELESELEALLNERASL 885

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*.
gi 1972266108  292 QEQMAEASGQLTAEAHINKVRAEEVSNLRRDLQKRNLNHEAYISDL 337
Cdd:TIGR02168  886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL 931
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 4-208 1.70e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 43.77  E-value: 1.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   4 NAEIEALEKKCKELEENHKREEEARKKYADELRAKIDQYEETKAAHERDRMLLDKRNKEIEELNRNLKAESESNYENAKK 83
Cdd:COG1196   322 EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  84 ASELERlrekekKEWDEKERRMQMEAENEANQhktqtEKLKDQISTLQTDFEKVSAQRKAQEQMNAELVDEVASFKQKAE 163
Cdd:COG1196   402 LEELEE------AEEALLERLERLEEELEELE-----EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1972266108 164 RAEEQKKKLVEDLDSLDDKLAAEKRANNEHVKHNKKLEGQLKATQ 208
Cdd:COG1196   471 EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
46 PHA02562
endonuclease subunit; Provisional
 4-223 2.36e-04

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 43.08  E-value: 2.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   4 NAEIEALEKKCKELEEN----HKREEEARKKYADELRAKIDQYEETKAAHERDRMLLDKRNKEIEELNRNLKAESES--- 76
Cdd:PHA02562  180 NQQIQTLDMKIDHIQQQiktyNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAAlnk 259

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  77 -NYENAKKASELERLrekekkewdekERRMQMEAENEANQHKTQT--------EKLKDQISTLQTDFEKVS-AQRKAQEQ 146
Cdd:PHA02562  260 lNTAAAKIKSKIEQF-----------QKVIKMYEKGGVCPTCTQQisegpdriTKIKDKLKELQHSLEKLDtAIDELEEI 328

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108 147 MNaELVDEVASFKQKAERAEEQKKKLVEDLDSLDDKLAAEKRANNEHVKHN---KKLEGQLKATQTQLTLALKEKHEFDV 223
Cdd:PHA02562  329 MD-EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAeelAKLQDELDKIVKTKSELVKEKYHRGI 407
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 4-211 2.56e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 43.12  E-value: 2.56e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108    4 NAEIEALEKKCKELEENHKREEEARKKYADELrakidqyEETKAAHERDRMLLDKRNKEIEELNRNLKAESESNYENAKK 83
Cdd:TIGR02168  294 ANEISRLEQQKQILRERLANLERQLEELEAQL-------EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   84 ASELERlREKEKKEWDEKERRMQMEAENEANQHKTQTEKLKDQISTLQ-----TDFEKVSAQRKAQEQMNAELVDEVASF 158
Cdd:TIGR02168  367 LEELES-RLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEdrrerLQQEIEELLKKLEEAELKELQAELEEL 445

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1972266108  159 KQKAERAEEQKKKLVEDLDSLDDKLAAEKRANNEHVKHNKKLEGQLKATQTQL 211
Cdd:TIGR02168  446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 5-217 2.72e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.83  E-value: 2.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   5 AEIEALEKKCKELEENHKREEEARKKYADELRAKIDQYEETKAAHERdrmlLDKRNKEIEELNRNLKAESESNYENAKKA 84
Cdd:COG4942    17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERR----IAALARRIRALEQELAALEAELAELEKEI 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  85 SELERLREKEKKEWDEKERRMQM-----------------EAENEANQHKTQTEKLKDQISTLQTDFEKVSAQRKAQEQM 147
Cdd:COG4942    93 AELRAELEAQKEELAELLRALYRlgrqpplalllspedflDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108 148 NAELVDEVASFKQKAERAEEQKKKLVEDLDSLDDKLAAEKRANNEHVKHNKKLEGQLKATQTQLTLALKE 217
Cdd:COG4942   173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 50-361 5.52e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.35  E-value: 5.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   50 ERDRMLLDKRNKEIEELNRN---LKAESESNYENAKKASELERLREKEKKEWDEKERRMQMEAENEANQHKTQTEKLKDQ 126
Cdd:TIGR02168  182 ERTRENLDRLEDILNELERQlksLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAE 261

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  127 ISTLQTDFEKVSAQRKAQEQMNAELVDEVASFKQKAERAEEQKKKLVEDLDSLDDKLaaekrannehvkhnKKLEGQLKA 206
Cdd:TIGR02168  262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQL--------------EELEAQLEE 327

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  207 TQTQLTLALKEKHEfdvdckrRESEIGELKLKAQGDANLISKLQAMLRKCISRIEELEEDLLEERKLRMKAERQFNELRS 286
Cdd:TIGR02168  328 LESKLDELAEELAE-------LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN 400

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1972266108  287 EYEVLQEQMAEASGQLTAEAHINKVRAEEVSNLRRDLQKRNLN-HEAYISDLCNMQYATVNNLRNLSQQSATLESE 361
Cdd:TIGR02168  401 EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEeLEEELEELQEELERLEEALEELREELEEAEQA 476
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
7-218 9.70e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 41.29  E-value: 9.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   7 IEALEKKCKELEENHKREEEARKKYADELRAKIDQYEETKAAHERDRMLLDKRNKEIEELNRNLKaesesnyenaKKASE 86
Cdd:COG4717    48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELE----------ELREE 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  87 LERLREKEKKEWDEKERRmqmEAENEANQHKTQTEKLKDQISTLQTDFEKVSAQRKAQEQMNAELVDEvasFKQKAERAE 166
Cdd:COG4717   118 LEKLEKLLQLLPLYQELE---ALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEEL---LEQLSLATE 191

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1972266108 167 EQKKKLVEDLDSLDDKLAAEKRANNEHVKHNKKLEGQLKATQTQLTLALKEK 218
Cdd:COG4717   192 EELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE 243
PTZ00121 PTZ00121
MAEBL; Provisional
 19-220 1.49e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.89  E-value: 1.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   19 ENHKREEEARKKYADELRAKIDQYEETKAAHERDRMLLDKRNKEIEELNRNLKAESESNYENAKKASELERLREKEKKEW 98
Cdd:PTZ00121  1167 EEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAE 1246

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   99 DEKERRMQMEAENEANQHKTQTE-KLKDQISTLQTDFEKVSAQRKAQEQMNAELVDEVASFKQKAE---RAEEQKKKLVE 174
Cdd:PTZ00121  1247 EERNNEEIRKFEEARMAHFARRQaAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEeakKADEAKKKAEE 1326

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1972266108  175 D---LDSLDDKLAAEKRANNEHVKHNKKLEGQLKATQTQLTLALKEKHE 220
Cdd:PTZ00121  1327 AkkkADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE 1375
PTZ00121 PTZ00121
MAEBL; Provisional
 2-316 1.73e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.89  E-value: 1.73e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108    2 KSNAEIEALEKKCKELEENHKREEEARKKyADELRAKID---QYEETKAAHERDRMLLDKRNKEIEELNRNLKAESESNY 78
Cdd:PTZ00121  1470 KKADEAKKKAEEAKKADEAKKKAEEAKKK-ADEAKKAAEakkKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKA 1548

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   79 ENAKKASELERLREKEKKEWDEKERRMQMEAENEANQHKTQTEKLKDQISTLQTDFEKVSAQRKAQEQMNAELVDEVASF 158
Cdd:PTZ00121  1549 DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  159 KQKAERAEEQKKKLVEDLDSLdDKLAAEKRANNEHVKHNKKLEGQLKATQTQLTLALKEKHEFDVDCKRRESEIGELKLK 238
Cdd:PTZ00121  1629 EEEKKKVEQLKKKEAEEKKKA-EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEEL 1707

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1972266108  239 AQGDANLISKLQAMLRKCISRIEELEEDLLEERKLRMKAERQFNELRSEYEVLQEQMAEASGQLTAEAHINKVRAEEV 316
Cdd:PTZ00121  1708 KKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 113-372 2.41e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 40.31  E-value: 2.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108 113 ANQHKTQTEKLKD-QISTLQTDFEKVSAQRKAQEQMNAELVDEVASFKQKAERAEEQKKKLVEDLDSLDDKLAAEKRANN 191
Cdd:COG1196   212 AERYRELKEELKElEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108 192 EHVKHNKKLEGQLKATQTQLTLALKEKHEFDVDCKRRESEIGELKLKAQGDANLISKLQAMLRKCISRIEELEEDLLEER 271
Cdd:COG1196   292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108 272 KLRMKAERQFNELRSEYEVLQEQMAEASGQLTAEAHINKVRAEEVSNLRRDLQKRNLNHEAYISDLCNMQYATVNNLRNL 351
Cdd:COG1196   372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451

                         250       260
                  ....*....|....*....|.
gi 1972266108 352 SQQSATLESEALRILDHRRAL 372
Cdd:COG1196   452 AELEEEEEALLELLAELLEEA 472
PTZ00121 PTZ00121
MAEBL; Provisional
 19-240 2.66e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.12  E-value: 2.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   19 ENHKREEEARKKYADELRAKIDQYEETKAAHERDRMLLDKRNKEIEELNRNLKAESESNYENAKKASEL---ERLREKEK 95
Cdd:PTZ00121  1227 EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAkkaEEKKKADE 1306

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   96 KEWDEKERRMQMEAENEANQHKTQTEKLKDQISTLQTDFEKVSAQRKAQEqmnaelvDEVASFKQKAERAEEQKKKLVED 175
Cdd:PTZ00121  1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAA-------DEAEAAEEKAEAAEKKKEEAKKK 1379

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1972266108  176 LDSLDDKlAAEKRANNEHVKhnKKLEGQLKATQTQLTLALKEKHEFDVDCKRRESEIGELKLKAQ 240
Cdd:PTZ00121  1380 ADAAKKK-AEEKKKADEAKK--KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE 1441
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 3-189 3.40e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 39.43  E-value: 3.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   3 SNAEIEALEKKCKELEENHKREEEARKKYADELRAKIDQYEETKAAHERDRMLLDKRNKEIEELNRNLKAESE------- 75
Cdd:COG3883    14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREelgerar 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  76 SNYENAKKASELERL---REKEKKEWDEKERRMQMEAENEA-NQHKTQTEKLKDQISTLQTDFEKVSAQRKAQEQMNAEL 151
Cdd:COG3883    94 ALYRSGGSVSYLDVLlgsESFSDFLDRLSALSKIADADADLlEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL 173

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1972266108 152 VDEVASFKQKAERAEEQKKKLVEDLDSLDDKLAAEKRA 189
Cdd:COG3883   174 EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
PTZ00121 PTZ00121
MAEBL; Provisional
 8-316 4.95e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 39.35  E-value: 4.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108    8 EALEKKCKELEENHKREEEARKKYADELRAKIDQYEETKAAHERDRMLLDKRNKEIEELNRNLKAESESNyENAKKASEL 87
Cdd:PTZ00121  1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE-EDKKKADEL 1410

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   88 ERLREKEKKEWDEKERRMQMEAENEANQHKTQTEKLKDQISTLQTDFEKVSAQRKAQEQMNAelvDEVASFKQKAERAEE 167
Cdd:PTZ00121  1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKA---DEAKKKAEEAKKADE 1487

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  168 QKKKLVEDLDSLDD--------------KLAAEKRANNEHVK--HNKKLEGQLKATQTQLTLALKEKHEFDvdcKRRESE 231
Cdd:PTZ00121  1488 AKKKAEEAKKKADEakkaaeakkkadeaKKAEEAKKADEAKKaeEAKKADEAKKAEEKKKADELKKAEELK---KAEEKK 1564

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  232 IGELKLKAQGDANLISKLQAMLRKC-ISRIEELEEDLLEERKLRMKAERQFNELRSEYEVLQ--EQMAEASGQLTAEAHI 308
Cdd:PTZ00121  1565 KAEEAKKAEEDKNMALRKAEEAKKAeEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKkaEEEKKKVEQLKKKEAE 1644


                   ....*...
gi 1972266108  309 NKVRAEEV 316
Cdd:PTZ00121  1645 EKKKAEEL 1652
PRK12704 PRK12704
phosphodiesterase; Provisional
 2-171 5.94e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 38.61  E-value: 5.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   2 KSNAEIEALEKKCKELEENHKREEEARKKYAdELRAKiDQYEETKAAHERDrmlLDKRNKEIEELNRNLKAEsESNYEna 81
Cdd:PRK12704   28 IAEAKIKEAEEEAKRILEEAKKEAEAIKKEA-LLEAK-EEIHKLRNEFEKE---LRERRNELQKLEKRLLQK-EENLD-- 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  82 KKASELERLREKEKKEWDEKERRMQMEAENEANQHKTQTEKLK--DQISTLQTDfekvsaQRKAQ--EQMNAELVDEVAS 157
Cdd:PRK12704  100 RKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQelERISGLTAE------EAKEIllEKVEEEARHEAAV 173

                         170
                  ....*....|....*
gi 1972266108 158 -FKQKAERAEEQKKK 171
Cdd:PRK12704  174 lIKEIEEEAKEEADK 188
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 2-189 6.76e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 38.21  E-value: 6.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108   2 KSNAEIEALEKKCKELEENHKREEEARKKYADELRAKIDQYEETKAAHERDRMLLDKRNKEIEELNRN----LKAESESN 77
Cdd:COG4942    52 ALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQpplaLLLSPEDF 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972266108  78 YENAKKASELERLREKEKKEWDEKERRMQMEAENEANQhKTQTEKLKDQISTLQTDFEKVSAQRKAQEQMNAELVDEVAS 157
Cdd:COG4942   132 LDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL-EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAE 210

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1972266108 158 FKQKAERAEEQKKKLVEDLDSLDDKLAAEKRA 189
Cdd:COG4942   211 LAAELAELQQEAEELEALIARLEAEAAAAAER 242
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH