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Conserved domains on  [gi|1972253702|ref|NP_001379331|]
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Amidinotransferase [Caenorhabditis elegans]

Protein Classification

dimethylarginine dimethylaminohydrolase family protein( domain architecture ID 10004634)

dimethylarginine dimethylaminohydrolase (DdaH) family protein similar to Pseudomonas aeruginosa N(G),N(G)-dimethylarginine dimethylaminohydrolase that hydrolyzes N(G),N(G)-dimethyl-L-arginine (ADMA) and N(G)-monomethyl-L-arginine (MMA)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DdaH COG1834
N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism];
13-272 3.03e-84

N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism];


:

Pssm-ID: 441439 [Multi-domain]  Cd Length: 264  Bit Score: 252.79  E-value: 3.03e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702  13 RVLMVPPKHFTVEYTINP------WMGGVVDKQKAHQQWNSLKSAIENAGVPVLTMEQTEGLPDQVFVCNSGLVYDDQVY 86
Cdd:COG1834     1 RVLMCRPDHFGVEYAINWmdplreWAGPPPDAERAVAQWDALVDALEALGVEVHRLPPVPGLPDMVFTRDAGLVIGDGAI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702  87 LSRFRHKERSGEQPLYLEWFKKNNIKTIGEGYEEIFEgGGDAVFsDRKTLWAGYGERSSKSVYEKIKALGTFDIVLCDMI 166
Cdd:COG1834    81 LARMRHPERRGEEAAYREWLEELGIPVVRLPEPGVFE-GGDVLL-DGDTLLVGYGFRTNRAGIEWLARLLGYEVVPLELV 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702 167 LPNFYHLDTCFAPVDETSALYYPPAFSEATNKEILRRLPNSIAVSEAEANAFVCNAITIR-DTVISPIGvSQATKDYLSA 245
Cdd:COG1834   159 DPRFLHLDTAFCPLAPGLALVYPEAFDPESLALLKEPGWDLIEVPEEEAAWLGCNVLSLGgRRVVSPAG-NPRLNAALRA 237
                         250       260
                  ....*....|....*....|....*..
gi 1972253702 246 RGKRVEEVDMSEFMKSGGACQCLVLRL 272
Cdd:COG1834   238 AGFEVIEVDLSEFLKGGGGFHCLTLPL 264
 
Name Accession Description Interval E-value
DdaH COG1834
N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism];
13-272 3.03e-84

N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism];


Pssm-ID: 441439 [Multi-domain]  Cd Length: 264  Bit Score: 252.79  E-value: 3.03e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702  13 RVLMVPPKHFTVEYTINP------WMGGVVDKQKAHQQWNSLKSAIENAGVPVLTMEQTEGLPDQVFVCNSGLVYDDQVY 86
Cdd:COG1834     1 RVLMCRPDHFGVEYAINWmdplreWAGPPPDAERAVAQWDALVDALEALGVEVHRLPPVPGLPDMVFTRDAGLVIGDGAI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702  87 LSRFRHKERSGEQPLYLEWFKKNNIKTIGEGYEEIFEgGGDAVFsDRKTLWAGYGERSSKSVYEKIKALGTFDIVLCDMI 166
Cdd:COG1834    81 LARMRHPERRGEEAAYREWLEELGIPVVRLPEPGVFE-GGDVLL-DGDTLLVGYGFRTNRAGIEWLARLLGYEVVPLELV 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702 167 LPNFYHLDTCFAPVDETSALYYPPAFSEATNKEILRRLPNSIAVSEAEANAFVCNAITIR-DTVISPIGvSQATKDYLSA 245
Cdd:COG1834   159 DPRFLHLDTAFCPLAPGLALVYPEAFDPESLALLKEPGWDLIEVPEEEAAWLGCNVLSLGgRRVVSPAG-NPRLNAALRA 237
                         250       260
                  ....*....|....*....|....*..
gi 1972253702 246 RGKRVEEVDMSEFMKSGGACQCLVLRL 272
Cdd:COG1834   238 AGFEVIEVDLSEFLKGGGGFHCLTLPL 264
DDAH_eukar pfam19420
N,N dimethylarginine dimethylhydrolase, eukaryotic; This family contains N(G),N(G) ...
38-269 3.05e-15

N,N dimethylarginine dimethylhydrolase, eukaryotic; This family contains N(G),N(G)-dimethylarginine dimethylaminohydrolases (DDAH) from eukaryotes. It also includes arginine deiminases and DDAH from prokaryotes. These enzymes are involved in arginine metabolism and belong to the amidinotransferase (AT) superfamily as they share the alpha/beta propeller fold, which includes structurally important residues (buried hydrophobic residues, buried hydrophilic residues hydrogen-bonded with mainchain groups and the hallmark of three consecutive buried Gly residues near the C-terminus, conserved among its members.


Pssm-ID: 437252 [Multi-domain]  Cd Length: 288  Bit Score: 73.95  E-value: 3.05e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702  38 KQKAHQQWNSLKSAIENAGVPVLTMEQTEG-LPDQVFVCNSGLVYDDQ-VYLSRFRHKERSGEQPLYLEWFKKNNIKTIG 115
Cdd:pfam19420  25 QERALKEFDAMVQALRQNGIEVIVLDDTEPkTPDAVFPNNWFSTHADGtVFLYPMYAENRRLERREDLLELLLEKGFAVY 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702 116 E-----GYEE---IFEGGGDAVFSDR-KTLWAGYGERSSKSVYEKI-KALGTFDIVLCDMILPN-----FYHLDTCFAPV 180
Cdd:pfam19420 105 KvldysGFEDeskFLEGTGDMVFDHEnKIAYGALSPRADEEVLEEVcREIGYKPVTFHSEVIVDrkgkpIYHTNVMMNVG 184
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702 181 DETSALYYPPAFSEATNKEILRRLPNS----IAVSEAEANAFVCNAITIRDTViSPIGVSQATKDYLS-------ARGKR 249
Cdd:pfam19420 185 EDLAVVCLESIPDRKERELVLRALTQSgkeiIDISEEQIFHFAGNVLELCNGN-KNLIMSVTAYDSLTpvqeqliEKYCE 263
                         250       260
                  ....*....|....*....|.
gi 1972253702 250 VEEVDMSEF-MKSGGACQCLV 269
Cdd:pfam19420 264 VISVDIPTIeRLGGGSARCMI 284
amidinotransferase-like cd21113
L-arginine:glycine amidinotransferase, inosamine-phosphate amidinotransferase and similar ...
37-267 2.87e-07

L-arginine:glycine amidinotransferase, inosamine-phosphate amidinotransferase and similar proteins; This family contains amidinotransferase enzymes known to catalyze the transfer of the amidino group from a donor molecule (usually arginine) to an acceptor molecule bearing a primary amine. They are widespread in nature, occurring in essential metabolic pathways in eukaryotes as well as in biosynthetic pathways for antibiotics and virulence factors in prokaryotes. This family includes L-arginine:glycine amidinotransferase (EC 2.1.4.1; also called glycine amidinotransferase, arginine-glycine amidinotransferase, or arginine-glycine transamidinase), inosamine-phosphate amidinotransferase (EC 2.1.4.2; also called inosamine amidinotransferase, inosamine-P amidinotransferase, or scyllo-inosamine-4-phosphate amidinotransferase or L-arginine:inosamine phosphate amidinotransferase), and similar proteins. L-arginine:glycine amidinotransferase (AT or AGAT) catalyzes the committed step in creatine biosynthesis by formation of guanidinoacetic acid, the immediate precursor of creatine. Inosamine-phosphate amidinotransferases catalyze two nonconsecutive transamidination reactions in the biosynthesis of the streptomycin family of antibiotics. This family also includes L-arginine:inosamine-phosphate Streptomyces griseus amidinotransferase StrB1, which is structurally similar to human L-arginine:glycine amidinotransferase; AT and StrB1 share conserved residues involved in substrate binding and catalysis at equivalent topological positions, suggesting a similar reaction mechanism among amidinotransferases.


Pssm-ID: 439146  Cd Length: 336  Bit Score: 50.96  E-value: 2.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702  37 DKQKAHQQWNSLKSAIENAGVPV--------LTMEQTEGLPDQVFVCNSGLVYDDQVYLS----RFRHKERSGEQPLYLE 104
Cdd:cd21113    54 DLKKAVAELENLASILEKEGVRVrrpkevdhLPAKTPDGETTGVMPRDILFVIGNKIIEApmawPSRFFEELAYRDILED 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702 105 WFKKNNIKTIG----EGYEEIFEG----GGDAVFSDRKTLWAG---------YGERSSKSVYEKIKAL-----GTFDIVL 162
Cdd:cd21113   134 YGESGLYRVMRapkpEGGDDLYDGqapaGEDIITETEPLFDAAdfmrfgkdiIGQRSQVTNMKGIEWLreylgDDYTVHI 213
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702 163 CDMILPNFYHLDTCFAPVDETSALYYPPAFSEATNKEILRRLPNSIAVSE----------AEANAFVCNAITIR-DTVIS 231
Cdd:cd21113   214 IELDDPHPMHLDCTFLPLREGLALIYPSRVVEPRQIPDFFKGWELINVPEypepddhplyMCSNWLGTNVLSLDeKTIIV 293
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1972253702 232 PIGVSQATKdYLSARGKRVEEVDMSEFMKSGGACQC 267
Cdd:cd21113   294 ERREVHLNR-QLRKLGMNVIEIPFYHAISLGGGFHC 328
 
Name Accession Description Interval E-value
DdaH COG1834
N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism];
13-272 3.03e-84

N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism];


Pssm-ID: 441439 [Multi-domain]  Cd Length: 264  Bit Score: 252.79  E-value: 3.03e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702  13 RVLMVPPKHFTVEYTINP------WMGGVVDKQKAHQQWNSLKSAIENAGVPVLTMEQTEGLPDQVFVCNSGLVYDDQVY 86
Cdd:COG1834     1 RVLMCRPDHFGVEYAINWmdplreWAGPPPDAERAVAQWDALVDALEALGVEVHRLPPVPGLPDMVFTRDAGLVIGDGAI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702  87 LSRFRHKERSGEQPLYLEWFKKNNIKTIGEGYEEIFEgGGDAVFsDRKTLWAGYGERSSKSVYEKIKALGTFDIVLCDMI 166
Cdd:COG1834    81 LARMRHPERRGEEAAYREWLEELGIPVVRLPEPGVFE-GGDVLL-DGDTLLVGYGFRTNRAGIEWLARLLGYEVVPLELV 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702 167 LPNFYHLDTCFAPVDETSALYYPPAFSEATNKEILRRLPNSIAVSEAEANAFVCNAITIR-DTVISPIGvSQATKDYLSA 245
Cdd:COG1834   159 DPRFLHLDTAFCPLAPGLALVYPEAFDPESLALLKEPGWDLIEVPEEEAAWLGCNVLSLGgRRVVSPAG-NPRLNAALRA 237
                         250       260
                  ....*....|....*....|....*..
gi 1972253702 246 RGKRVEEVDMSEFMKSGGACQCLVLRL 272
Cdd:COG1834   238 AGFEVIEVDLSEFLKGGGGFHCLTLPL 264
DDAH_eukar pfam19420
N,N dimethylarginine dimethylhydrolase, eukaryotic; This family contains N(G),N(G) ...
38-269 3.05e-15

N,N dimethylarginine dimethylhydrolase, eukaryotic; This family contains N(G),N(G)-dimethylarginine dimethylaminohydrolases (DDAH) from eukaryotes. It also includes arginine deiminases and DDAH from prokaryotes. These enzymes are involved in arginine metabolism and belong to the amidinotransferase (AT) superfamily as they share the alpha/beta propeller fold, which includes structurally important residues (buried hydrophobic residues, buried hydrophilic residues hydrogen-bonded with mainchain groups and the hallmark of three consecutive buried Gly residues near the C-terminus, conserved among its members.


Pssm-ID: 437252 [Multi-domain]  Cd Length: 288  Bit Score: 73.95  E-value: 3.05e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702  38 KQKAHQQWNSLKSAIENAGVPVLTMEQTEG-LPDQVFVCNSGLVYDDQ-VYLSRFRHKERSGEQPLYLEWFKKNNIKTIG 115
Cdd:pfam19420  25 QERALKEFDAMVQALRQNGIEVIVLDDTEPkTPDAVFPNNWFSTHADGtVFLYPMYAENRRLERREDLLELLLEKGFAVY 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702 116 E-----GYEE---IFEGGGDAVFSDR-KTLWAGYGERSSKSVYEKI-KALGTFDIVLCDMILPN-----FYHLDTCFAPV 180
Cdd:pfam19420 105 KvldysGFEDeskFLEGTGDMVFDHEnKIAYGALSPRADEEVLEEVcREIGYKPVTFHSEVIVDrkgkpIYHTNVMMNVG 184
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702 181 DETSALYYPPAFSEATNKEILRRLPNS----IAVSEAEANAFVCNAITIRDTViSPIGVSQATKDYLS-------ARGKR 249
Cdd:pfam19420 185 EDLAVVCLESIPDRKERELVLRALTQSgkeiIDISEEQIFHFAGNVLELCNGN-KNLIMSVTAYDSLTpvqeqliEKYCE 263
                         250       260
                  ....*....|....*....|.
gi 1972253702 250 VEEVDMSEF-MKSGGACQCLV 269
Cdd:pfam19420 264 VISVDIPTIeRLGGGSARCMI 284
amidinotransferase-like cd21113
L-arginine:glycine amidinotransferase, inosamine-phosphate amidinotransferase and similar ...
37-267 2.87e-07

L-arginine:glycine amidinotransferase, inosamine-phosphate amidinotransferase and similar proteins; This family contains amidinotransferase enzymes known to catalyze the transfer of the amidino group from a donor molecule (usually arginine) to an acceptor molecule bearing a primary amine. They are widespread in nature, occurring in essential metabolic pathways in eukaryotes as well as in biosynthetic pathways for antibiotics and virulence factors in prokaryotes. This family includes L-arginine:glycine amidinotransferase (EC 2.1.4.1; also called glycine amidinotransferase, arginine-glycine amidinotransferase, or arginine-glycine transamidinase), inosamine-phosphate amidinotransferase (EC 2.1.4.2; also called inosamine amidinotransferase, inosamine-P amidinotransferase, or scyllo-inosamine-4-phosphate amidinotransferase or L-arginine:inosamine phosphate amidinotransferase), and similar proteins. L-arginine:glycine amidinotransferase (AT or AGAT) catalyzes the committed step in creatine biosynthesis by formation of guanidinoacetic acid, the immediate precursor of creatine. Inosamine-phosphate amidinotransferases catalyze two nonconsecutive transamidination reactions in the biosynthesis of the streptomycin family of antibiotics. This family also includes L-arginine:inosamine-phosphate Streptomyces griseus amidinotransferase StrB1, which is structurally similar to human L-arginine:glycine amidinotransferase; AT and StrB1 share conserved residues involved in substrate binding and catalysis at equivalent topological positions, suggesting a similar reaction mechanism among amidinotransferases.


Pssm-ID: 439146  Cd Length: 336  Bit Score: 50.96  E-value: 2.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702  37 DKQKAHQQWNSLKSAIENAGVPV--------LTMEQTEGLPDQVFVCNSGLVYDDQVYLS----RFRHKERSGEQPLYLE 104
Cdd:cd21113    54 DLKKAVAELENLASILEKEGVRVrrpkevdhLPAKTPDGETTGVMPRDILFVIGNKIIEApmawPSRFFEELAYRDILED 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702 105 WFKKNNIKTIG----EGYEEIFEG----GGDAVFSDRKTLWAG---------YGERSSKSVYEKIKAL-----GTFDIVL 162
Cdd:cd21113   134 YGESGLYRVMRapkpEGGDDLYDGqapaGEDIITETEPLFDAAdfmrfgkdiIGQRSQVTNMKGIEWLreylgDDYTVHI 213
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702 163 CDMILPNFYHLDTCFAPVDETSALYYPPAFSEATNKEILRRLPNSIAVSE----------AEANAFVCNAITIR-DTVIS 231
Cdd:cd21113   214 IELDDPHPMHLDCTFLPLREGLALIYPSRVVEPRQIPDFFKGWELINVPEypepddhplyMCSNWLGTNVLSLDeKTIIV 293
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1972253702 232 PIGVSQATKdYLSARGKRVEEVDMSEFMKSGGACQC 267
Cdd:cd21113   294 ERREVHLNR-QLRKLGMNVIEIPFYHAISLGGGFHC 328
ADI pfam02274
Arginine deiminase; This family contains arginine deiminases, EC:3.5.3.6., enzymes that ...
125-271 3.75e-03

Arginine deiminase; This family contains arginine deiminases, EC:3.5.3.6., enzymes that catalyze the reaction: arginine + H2O <=> citrulline + NH3. These enzymes belong to the amidinotranferase (AT) superfamily, which share the alpha/beta fold including structurally important residues, i.e buried hydrophobic residues, buried hydrophilic residues hydrogen-bonded with mainchain groups and a structural hallmark of three consecutive buried Gly residues near the C-terminus, conserved among these proteins.


Pssm-ID: 426693  Cd Length: 377  Bit Score: 38.13  E-value: 3.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702 125 GGDAVFSDRKTLWAGYGERSS----KSVYEKIKALGTFDIVLCDMI--LPNFYHLDTCFAPVDETSALYYPPAFSEATNK 198
Cdd:pfam02274 188 GGDILPLSNGVVLIGVSERTSaqgiEELARKLFADTRAKRVIAINIpkHRAFMHLDTVFTMVDRDKFTIYPNIMDAEGVF 267
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972253702 199 EILRRLPNSIA----------------------------------VSEAEANAFVCNAITIRDTVIspIGVSQ--ATKDY 242
Cdd:pfam02274 268 WVLRPEDGDPAddvgiehaadllevlekalglkglrlietgggdvAAEREQWDDGNNTLAIAPGVV--VTYDRntVTNEL 345
                         170       180       190
                  ....*....|....*....|....*....|.
gi 1972253702 243 LSARGKRVEEVDMSEF--MKSGGACQCLVLR 271
Cdd:pfam02274 346 LREAGIKVIEIPGSELgrGRGGPRCMSCPLV 376
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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