NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1833303518|ref|NP_001368869|]
View 

thrombospondin-2 isoform 3 precursor [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 20-215 4.32e-48

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


:

Pssm-ID: 214560  Cd Length: 184  Bit Score: 168.30  E-value: 4.32e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1833303518   20 HQDKDTTFDLFSISNINRKTIGAKqfrgpdPGVPAYRFVRfdyiPPVNADDLSKITKiMRQKEGFFLTAQLKQDGKSRGT 99
Cdd:smart00210   1 GQDLLQVFDLPSLSFAIRQVVGPE------PGSPAYRLGD----PALVPQPTRDLFP-SGLPEDFSLLTTFRQTPKSRGV 69

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1833303518  100 LLALEGPgLSQRQFEIVSNGPADTLDLTY-WIDGTRHVVSLEDVGLADSQWKNVTVQVAGETYSLHVGCDLIDSFALDEP 178
Cdd:smart00210  70 LFAIYDA-QNVRQFGLEVDGRANTLLLRYqGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRP 148

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1833303518  179 FYEHLQAEKSRMYVAKGSAREsHFRGLLQNVHLVFEN 215
Cdd:smart00210 149 GQPPIDTDGIEVRGAQAADRK-PFQGDLQQLKIVCDP 184
VWC pfam00093
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...
 320-374 1.04e-16

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.


:

Pssm-ID: 278520  Cd Length: 57  Bit Score: 74.77  E-value: 1.04e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1833303518 320 CWQDGRFFAENETWVVDSCTTCTCKKFKTICHQITCPPATCASP--SFVEGECCPSC 374
Cdd:pfam00093   1 CVQNGVVYENGETWKPDLCTICTCDDGKVLCDKIICPPLDCPNPrlEIPPGECCPVC 57
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 497-549 7.63e-16

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


:

Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 72.23  E-value: 7.63e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1833303518  497 WSPWSPWSACTVTCAGGIRERTRVCNSPEPQYGGKACVGDVQERQMCNKRSCP 549
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP 53
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 440-492 1.55e-15

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


:

Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 71.08  E-value: 1.55e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1833303518  440 WSHWSPWSSCSVTCGVGNITRIRLCNSPVPQMGGKNCKGSGRETKACQGAPCP 492
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP 53
TSP_1 pfam00090
Thrombospondin type 1 domain;
385-430 2.62e-12

Thrombospondin type 1 domain;


:

Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 62.05  E-value: 2.62e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1833303518 385 SPWAEWTQCSVTCGSGTQQRGRSCDVT---SNTCLGPSIQTRACSLSKC 430
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPfpgGEPCTGDDIETQACKMDKC 49
EGF_3 pfam12947
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
 652-691 2.20e-07

EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.


:

Pssm-ID: 463759 [Multi-domain]  Cd Length: 36  Bit Score: 47.59  E-value: 2.20e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1833303518 652 CKDKTHNCHKHAECIYlghfSDPMYKCECQTGYAGDGLIC 691
Cdd:pfam12947   1 CSDNNGGCHPNATCTN----TGGSFTCTCNDGYTGDGVTC 36
 
Name Accession Description Interval E-value
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 20-215 4.32e-48

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


Pssm-ID: 214560  Cd Length: 184  Bit Score: 168.30  E-value: 4.32e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1833303518   20 HQDKDTTFDLFSISNINRKTIGAKqfrgpdPGVPAYRFVRfdyiPPVNADDLSKITKiMRQKEGFFLTAQLKQDGKSRGT 99
Cdd:smart00210   1 GQDLLQVFDLPSLSFAIRQVVGPE------PGSPAYRLGD----PALVPQPTRDLFP-SGLPEDFSLLTTFRQTPKSRGV 69

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1833303518  100 LLALEGPgLSQRQFEIVSNGPADTLDLTY-WIDGTRHVVSLEDVGLADSQWKNVTVQVAGETYSLHVGCDLIDSFALDEP 178
Cdd:smart00210  70 LFAIYDA-QNVRQFGLEVDGRANTLLLRYqGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRP 148

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1833303518  179 FYEHLQAEKSRMYVAKGSAREsHFRGLLQNVHLVFEN 215
Cdd:smart00210 149 GQPPIDTDGIEVRGAQAADRK-PFQGDLQQLKIVCDP 184
VWC pfam00093
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...
 320-374 1.04e-16

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.


Pssm-ID: 278520  Cd Length: 57  Bit Score: 74.77  E-value: 1.04e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1833303518 320 CWQDGRFFAENETWVVDSCTTCTCKKFKTICHQITCPPATCASP--SFVEGECCPSC 374
Cdd:pfam00093   1 CVQNGVVYENGETWKPDLCTICTCDDGKVLCDKIICPPLDCPNPrlEIPPGECCPVC 57
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 497-549 7.63e-16

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 72.23  E-value: 7.63e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1833303518  497 WSPWSPWSACTVTCAGGIRERTRVCNSPEPQYGGKACVGDVQERQMCNKRSCP 549
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP 53
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 440-492 1.55e-15

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 71.08  E-value: 1.55e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1833303518  440 WSHWSPWSSCSVTCGVGNITRIRLCNSPVPQMGGKNCKGSGRETKACQGAPCP 492
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP 53
TSP_1 pfam00090
Thrombospondin type 1 domain;
498-548 9.54e-15

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 68.98  E-value: 9.54e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1833303518 498 SPWSPWSACTVTCAGGIRERTRVCNSPEPqyGGKACVGDVQERQMCNKRSC 548
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFP--GGEPCTGDDIETQACKMDKC 49
VWC smart00214
von Willebrand factor (vWF) type C domain;
320-374 7.04e-14

von Willebrand factor (vWF) type C domain;


Pssm-ID: 214564  Cd Length: 59  Bit Score: 66.77  E-value: 7.04e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1833303518  320 CWQDGRFFAENETWVVDSCTTCTCKKFKTI-CHQITCPPAT-CASPS--FVEGECCPSC 374
Cdd:smart00214   1 CVHNGRVYNDGETWKPDPCQICTCLDGTTVlCDPVECPPPPdCPNPErvKPPGECCPRC 59
TSP_1 pfam00090
Thrombospondin type 1 domain;
441-491 7.86e-14

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 66.29  E-value: 7.86e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1833303518 441 SHWSPWSSCSVTCGVGNITRIRLCNSPVPqmGGKNCKGSGRETKACQGAPC 491
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFP--GGEPCTGDDIETQACKMDKC 49
TSP_1 pfam00090
Thrombospondin type 1 domain;
385-430 2.62e-12

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 62.05  E-value: 2.62e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1833303518 385 SPWAEWTQCSVTCGSGTQQRGRSCDVT---SNTCLGPSIQTRACSLSKC 430
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPfpgGEPCTGDDIETQACKMDKC 49
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 384-431 8.67e-11

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 57.60  E-value: 8.67e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1833303518  384 WSPWAEWTQCSVTCGSGTQQRGRSCDVTSNT-----CLGPSIQTRACSLSKCD 431
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQngggpCTGEDVETRACNEQPCP 53
EGF_3 pfam12947
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
 652-691 2.20e-07

EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.


Pssm-ID: 463759 [Multi-domain]  Cd Length: 36  Bit Score: 47.59  E-value: 2.20e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1833303518 652 CKDKTHNCHKHAECIYlghfSDPMYKCECQTGYAGDGLIC 691
Cdd:pfam12947   1 CSDNNGGCHPNATCTN----TGGSFTCTCNDGYTGDGVTC 36
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 386-406 3.15e-04

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 44.18  E-value: 3.15e-04
                          10        20
                  ....*....|....*....|.
gi 1833303518 386 PWAEWTQCSVTCGSGTQQRGR 406
Cdd:PTZ00441  242 PWDEWTPCSVTCGKGTHSRSR 262
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 499-551 6.88e-04

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 43.03  E-value: 6.88e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1833303518 499 PWSPWSACTVTCAGGIRERTRvcnsPEPQYGgkaCVGDVQERqmCNKRSCPVD 551
Cdd:PTZ00441  242 PWDEWTPCSVTCGKGTHSRSR----PILHEG---CTTHMVEE--CEEEECPVE 285
 
Name Accession Description Interval E-value
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 20-215 4.32e-48

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


Pssm-ID: 214560  Cd Length: 184  Bit Score: 168.30  E-value: 4.32e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1833303518   20 HQDKDTTFDLFSISNINRKTIGAKqfrgpdPGVPAYRFVRfdyiPPVNADDLSKITKiMRQKEGFFLTAQLKQDGKSRGT 99
Cdd:smart00210   1 GQDLLQVFDLPSLSFAIRQVVGPE------PGSPAYRLGD----PALVPQPTRDLFP-SGLPEDFSLLTTFRQTPKSRGV 69

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1833303518  100 LLALEGPgLSQRQFEIVSNGPADTLDLTY-WIDGTRHVVSLEDVGLADSQWKNVTVQVAGETYSLHVGCDLIDSFALDEP 178
Cdd:smart00210  70 LFAIYDA-QNVRQFGLEVDGRANTLLLRYqGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRP 148

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1833303518  179 FYEHLQAEKSRMYVAKGSAREsHFRGLLQNVHLVFEN 215
Cdd:smart00210 149 GQPPIDTDGIEVRGAQAADRK-PFQGDLQQLKIVCDP 184
VWC pfam00093
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ...
 320-374 1.04e-16

von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.


Pssm-ID: 278520  Cd Length: 57  Bit Score: 74.77  E-value: 1.04e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1833303518 320 CWQDGRFFAENETWVVDSCTTCTCKKFKTICHQITCPPATCASP--SFVEGECCPSC 374
Cdd:pfam00093   1 CVQNGVVYENGETWKPDLCTICTCDDGKVLCDKIICPPLDCPNPrlEIPPGECCPVC 57
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 497-549 7.63e-16

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 72.23  E-value: 7.63e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1833303518  497 WSPWSPWSACTVTCAGGIRERTRVCNSPEPQYGGKACVGDVQERQMCNKRSCP 549
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP 53
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 440-492 1.55e-15

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 71.08  E-value: 1.55e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1833303518  440 WSHWSPWSSCSVTCGVGNITRIRLCNSPVPQMGGKNCKGSGRETKACQGAPCP 492
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP 53
TSP_1 pfam00090
Thrombospondin type 1 domain;
498-548 9.54e-15

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 68.98  E-value: 9.54e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1833303518 498 SPWSPWSACTVTCAGGIRERTRVCNSPEPqyGGKACVGDVQERQMCNKRSC 548
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFP--GGEPCTGDDIETQACKMDKC 49
VWC smart00214
von Willebrand factor (vWF) type C domain;
320-374 7.04e-14

von Willebrand factor (vWF) type C domain;


Pssm-ID: 214564  Cd Length: 59  Bit Score: 66.77  E-value: 7.04e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1833303518  320 CWQDGRFFAENETWVVDSCTTCTCKKFKTI-CHQITCPPAT-CASPS--FVEGECCPSC 374
Cdd:smart00214   1 CVHNGRVYNDGETWKPDPCQICTCLDGTTVlCDPVECPPPPdCPNPErvKPPGECCPRC 59
TSP_1 pfam00090
Thrombospondin type 1 domain;
441-491 7.86e-14

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 66.29  E-value: 7.86e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1833303518 441 SHWSPWSSCSVTCGVGNITRIRLCNSPVPqmGGKNCKGSGRETKACQGAPC 491
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFP--GGEPCTGDDIETQACKMDKC 49
TSP_1 pfam00090
Thrombospondin type 1 domain;
385-430 2.62e-12

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 62.05  E-value: 2.62e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1833303518 385 SPWAEWTQCSVTCGSGTQQRGRSCDVT---SNTCLGPSIQTRACSLSKC 430
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPfpgGEPCTGDDIETQACKMDKC 49
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 384-431 8.67e-11

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 57.60  E-value: 8.67e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1833303518  384 WSPWAEWTQCSVTCGSGTQQRGRSCDVTSNT-----CLGPSIQTRACSLSKCD 431
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQngggpCTGEDVETRACNEQPCP 53
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 498-548 1.24e-09

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 54.21  E-value: 1.24e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1833303518 498 SPWSPWSACTVTCAGGIRERTRVCNSPePQYGGKACvGDVQERQMCNKRSC 548
Cdd:pfam19028   4 SEWSEWSECSVTCGGGVQTRTRTVIVE-PQNGGRPC-PELLERRPCNLPPC 52
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 441-491 2.61e-08

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 50.74  E-value: 2.61e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1833303518 441 SHWSPWSSCSVTCGVGNITRIRLCNSPvPQMGGKNCkGSGRETKACQGAPC 491
Cdd:pfam19028   4 SEWSEWSECSVTCGGGVQTRTRTVIVE-PQNGGRPC-PELLERRPCNLPPC 52
EGF_3 pfam12947
EGF domain; This family includes a variety of EGF-like domain homologs. This family includes ...
 652-691 2.20e-07

EGF domain; This family includes a variety of EGF-like domain homologs. This family includes the C-terminal domain of the malaria parasite MSP1 protein.


Pssm-ID: 463759 [Multi-domain]  Cd Length: 36  Bit Score: 47.59  E-value: 2.20e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1833303518 652 CKDKTHNCHKHAECIYlghfSDPMYKCECQTGYAGDGLIC 691
Cdd:pfam12947   1 CSDNNGGCHPNATCTN----TGGSFTCTCNDGYTGDGVTC 36
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 385-430 9.57e-06

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 43.42  E-value: 9.57e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1833303518 385 SPWAEWTQCSVTCGSGTQQR-----------GRSCdvtsntclGPSIQTRACSLSKC 430
Cdd:pfam19028   4 SEWSEWSECSVTCGGGVQTRtrtvivepqngGRPC--------PELLERRPCNLPPC 52
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 386-406 3.15e-04

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 44.18  E-value: 3.15e-04
                          10        20
                  ....*....|....*....|.
gi 1833303518 386 PWAEWTQCSVTCGSGTQQRGR 406
Cdd:PTZ00441  242 PWDEWTPCSVTCGKGTHSRSR 262
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 499-551 6.88e-04

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 43.03  E-value: 6.88e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1833303518 499 PWSPWSACTVTCAGGIRERTRvcnsPEPQYGgkaCVGDVQERqmCNKRSCPVD 551
Cdd:PTZ00441  242 PWDEWTPCSVTCGKGTHSRSR----PILHEG---CTTHMVEE--CEEEECPVE 285
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
 445-491 1.08e-03

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 37.82  E-value: 1.08e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1833303518 445 PWSSCSVTCGVGNITRIRLCNSPVPQ--MGGKNCKGSGR--ETKACQGAPC 491
Cdd:pfam19030   5 PWGECSVTCGGGVQTRLVQCVQKGGGsiVPDSECSAQKKppETQSCNLKPC 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH