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Conserved domains on  [gi|1831510927|ref|NP_001367413|]
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WSN domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WSN smart00453
Worm-specific (usually) N-terminal domain;
40-107 4.17e-17

Worm-specific (usually) N-terminal domain;


:

Pssm-ID: 197734  Cd Length: 69  Bit Score: 76.85  E-value: 4.17e-17
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831510927    40 ALVLAYNKLAIITRVTNAIVLQAEGIRKLVKVRDVVAELIRSPNASFYDLMDVDPTNIFPVLNEIIEA 107
Cdd:smart00453    2 KLQTVIERLSMLARVTNAISLQAGLINGSIPIDDVIAELLNIDSSKLSDIINVDLTKIDEGLNKLKEI 69
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
859-932 3.28e-12

Ankyrin repeat [Signal transduction mechanisms];


:

Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 68.83  E-value: 3.28e-12
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831510927  859 DGNNALVDAAQDINATNVLKAVKKGAYIDVYSKYGNTPLHVASKSGYPEIVEILIKNGADRTLLNAQNKTAEQL 932
Cdd:COG0666    152 DGNTPLHLAAANGNLEIVKLLLEAGADVNARDNDGETPLHLAAENGHLEIVKLLLEAGADVNAKDNDGKTALDL 225
BRCT smart00292
breast cancer carboxy-terminal domain;
968-1048 5.88e-06

breast cancer carboxy-terminal domain;


:

Pssm-ID: 214602 [Multi-domain]  Cd Length: 78  Bit Score: 45.44  E-value: 5.88e-06
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831510927   968 PDVFPVSSYKIYIDeqaIDQMSNSFMERFI-----AITTDETSLSITHFIVKTDENGTLVtdafqLLSWVLSGVLIMKNS 1042
Cdd:smart00292    1 PKLFKGKTFYITGS---FDKEERDELKELIealggKVTSSLSSKTTTHVIVGSPEGGKLE-----LLKAIALGIPIVKEE 72


                    ....*.
gi 1831510927  1043 WMKDCL 1048
Cdd:smart00292   73 WLLDCL 78
 
Name Accession Description Interval E-value
WSN smart00453
Worm-specific (usually) N-terminal domain;
40-107 4.17e-17

Worm-specific (usually) N-terminal domain;


Pssm-ID: 197734  Cd Length: 69  Bit Score: 76.85  E-value: 4.17e-17
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831510927    40 ALVLAYNKLAIITRVTNAIVLQAEGIRKLVKVRDVVAELIRSPNASFYDLMDVDPTNIFPVLNEIIEA 107
Cdd:smart00453    2 KLQTVIERLSMLARVTNAISLQAGLINGSIPIDDVIAELLNIDSSKLSDIINVDLTKIDEGLNKLKEI 69
WSN pfam02206
Domain of unknown function;
40-104 7.23e-14

Domain of unknown function;


Pssm-ID: 426657  Cd Length: 66  Bit Score: 67.48  E-value: 7.23e-14
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831510927   40 ALVLAYNKLAIITRVTNAIVLQAEGIRKLVKVRDVVAELIRSPNASFYDLMDVDPTNIFPVLNEI 104
Cdd:pfam02206    1 NLSLIVEKLSILARITNAISLQAGLIDGSIPVDDVISELLNLGSVTLSDIIKIDVDKLKELLEKL 65
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
859-932 3.28e-12

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 68.83  E-value: 3.28e-12
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831510927  859 DGNNALVDAAQDINATNVLKAVKKGAYIDVYSKYGNTPLHVASKSGYPEIVEILIKNGADRTLLNAQNKTAEQL 932
Cdd:COG0666    152 DGNTPLHLAAANGNLEIVKLLLEAGADVNARDNDGETPLHLAAENGHLEIVKLLLEAGADVNAKDNDGKTALDL 225
Ank_2 pfam12796
Ankyrin repeats (3 copies);
835-918 7.45e-08

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 51.27  E-value: 7.45e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831510927  835 YLYYFGKEADFQkrwrysfftdRQDGNNALVDAAQDiNATNVLKAVKKGAYIDVYSkYGNTPLHVASKSGYPEIVEILIK 914
Cdd:pfam12796   15 LLLENGADANLQ----------DKNGRTALHLAAKN-GHLEIVKLLLEHADVNLKD-NGRTALHYAARSGHLEIVKLLLE 82


                   ....
gi 1831510927  915 NGAD 918
Cdd:pfam12796   83 KGAD 86
PHA03095 PHA03095
ankyrin-like protein; Provisional
 862-929 4.57e-06

ankyrin-like protein; Provisional


Pssm-ID: 222980 [Multi-domain]  Cd Length: 471  Bit Score: 50.79  E-value: 4.57e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831510927  862 NALVDAAQDINAT------------------NVLKA-VKKGAYIDVYSKYGNTPLHV--ASKSGYPEIVEILIKNGADRT 920
Cdd:PHA03095    67 RLLLEAGADVNAPercgftplhlylynattlDVIKLlIKAGADVNAKDKVGRTPLHVylSGFNINPKVIRLLLRKGADVN 146


                   ....*....
gi 1831510927  921 LLNAQNKTA 929
Cdd:PHA03095   147 ALDLYGMTP 155
BRCT smart00292
breast cancer carboxy-terminal domain;
968-1048 5.88e-06

breast cancer carboxy-terminal domain;


Pssm-ID: 214602 [Multi-domain]  Cd Length: 78  Bit Score: 45.44  E-value: 5.88e-06
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831510927   968 PDVFPVSSYKIYIDeqaIDQMSNSFMERFI-----AITTDETSLSITHFIVKTDENGTLVtdafqLLSWVLSGVLIMKNS 1042
Cdd:smart00292    1 PKLFKGKTFYITGS---FDKEERDELKELIealggKVTSSLSSKTTTHVIVGSPEGGKLE-----LLKAIALGIPIVKEE 72


                    ....*.
gi 1831510927  1043 WMKDCL 1048
Cdd:smart00292   73 WLLDCL 78
ANK smart00248
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four ...
 892-918 2.69e-05

ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.


Pssm-ID: 197603 [Multi-domain]  Cd Length: 30  Bit Score: 42.19  E-value: 2.69e-05
                            10        20
                    ....*....|....*....|....*..
gi 1831510927   892 YGNTPLHVASKSGYPEIVEILIKNGAD 918
Cdd:smart00248    1 DGRTPLHLAAENGNLEVVKLLLDKGAD 27
 
Name Accession Description Interval E-value
WSN smart00453
Worm-specific (usually) N-terminal domain;
40-107 4.17e-17

Worm-specific (usually) N-terminal domain;


Pssm-ID: 197734  Cd Length: 69  Bit Score: 76.85  E-value: 4.17e-17
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831510927    40 ALVLAYNKLAIITRVTNAIVLQAEGIRKLVKVRDVVAELIRSPNASFYDLMDVDPTNIFPVLNEIIEA 107
Cdd:smart00453    2 KLQTVIERLSMLARVTNAISLQAGLINGSIPIDDVIAELLNIDSSKLSDIINVDLTKIDEGLNKLKEI 69
WSN pfam02206
Domain of unknown function;
40-104 7.23e-14

Domain of unknown function;


Pssm-ID: 426657  Cd Length: 66  Bit Score: 67.48  E-value: 7.23e-14
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831510927   40 ALVLAYNKLAIITRVTNAIVLQAEGIRKLVKVRDVVAELIRSPNASFYDLMDVDPTNIFPVLNEI 104
Cdd:pfam02206    1 NLSLIVEKLSILARITNAISLQAGLIDGSIPVDDVISELLNLGSVTLSDIIKIDVDKLKELLEKL 65
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
859-932 3.28e-12

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 68.83  E-value: 3.28e-12
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831510927  859 DGNNALVDAAQDINATNVLKAVKKGAYIDVYSKYGNTPLHVASKSGYPEIVEILIKNGADRTLLNAQNKTAEQL 932
Cdd:COG0666    152 DGNTPLHLAAANGNLEIVKLLLEAGADVNARDNDGETPLHLAAENGHLEIVKLLLEAGADVNAKDNDGKTALDL 225
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
858-929 4.40e-10

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 62.28  E-value: 4.40e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831510927  858 QDGNNALVDAAQ--DINATNVLkaVKKGAYIDVYSKYGNTPLHVASKSGYPEIVEILIKNGADRTLLNAQNKTA 929
Cdd:COG0666    118 KDGETPLHLAAYngNLEIVKLL--LEAGADVNAQDNDGNTPLHLAAANGNLEIVKLLLEAGADVNARDNDGETP 189
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
859-929 8.33e-10

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 61.51  E-value: 8.33e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1831510927  859 DGNNALVDAAQDINATNVLKAVKKGAYIDVYSKYGNTPLHVASKSGYPEIVEILIKNGADRTLLNAQNKTA 929
Cdd:COG0666     86 GGNTLLHAAARNGDLEIVKLLLEAGADVNARDKDGETPLHLAAYNGNLEIVKLLLEAGADVNAQDNDGNTP 156
Ank_2 pfam12796
Ankyrin repeats (3 copies);
835-918 7.45e-08

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 51.27  E-value: 7.45e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831510927  835 YLYYFGKEADFQkrwrysfftdRQDGNNALVDAAQDiNATNVLKAVKKGAYIDVYSkYGNTPLHVASKSGYPEIVEILIK 914
Cdd:pfam12796   15 LLLENGADANLQ----------DKNGRTALHLAAKN-GHLEIVKLLLEHADVNLKD-NGRTALHYAARSGHLEIVKLLLE 82


                   ....
gi 1831510927  915 NGAD 918
Cdd:pfam12796   83 KGAD 86
Ank pfam00023
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ...
 892-927 2.56e-06

Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity.


Pssm-ID: 459634 [Multi-domain]  Cd Length: 34  Bit Score: 44.97  E-value: 2.56e-06
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1831510927  892 YGNTPLHVAS-KSGYPEIVEILIKNGADrtlLNAQNK 927
Cdd:pfam00023    1 DGNTPLHLAAgRRGNLEIVKLLLSKGAD---VNARDK 34
Ank_5 pfam13857
Ankyrin repeats (many copies);
891-929 2.97e-06

Ankyrin repeats (many copies);


Pssm-ID: 433530 [Multi-domain]  Cd Length: 56  Bit Score: 45.42  E-value: 2.97e-06
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 1831510927  891 KYGNTPLHVASKSGYPEIVEILIKNGADRTLLNAQNKTA 929
Cdd:pfam13857   14 GEGYTPLHVAAKYGALEIVRVLLAYGVDLNLKDEEGLTA 52
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
854-927 3.59e-06

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 50.34  E-value: 3.59e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831510927  854 FTDRQDGNNALVDAAQDINATNVLKAVKKGAYIDVYSKYGNTPLHVASKSGYPEIVEILIKNGADrtlLNAQNK 927
Cdd:COG0666     48 ALADALGALLLLAAALAGDLLVALLLLAAGADINAKDDGGNTLLHAAARNGDLEIVKLLLEAGAD---VNARDK 118
PHA03095 PHA03095
ankyrin-like protein; Provisional
 862-929 4.57e-06

ankyrin-like protein; Provisional


Pssm-ID: 222980 [Multi-domain]  Cd Length: 471  Bit Score: 50.79  E-value: 4.57e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831510927  862 NALVDAAQDINAT------------------NVLKA-VKKGAYIDVYSKYGNTPLHV--ASKSGYPEIVEILIKNGADRT 920
Cdd:PHA03095    67 RLLLEAGADVNAPercgftplhlylynattlDVIKLlIKAGADVNAKDKVGRTPLHVylSGFNINPKVIRLLLRKGADVN 146


                   ....*....
gi 1831510927  921 LLNAQNKTA 929
Cdd:PHA03095   147 ALDLYGMTP 155
BRCT smart00292
breast cancer carboxy-terminal domain;
968-1048 5.88e-06

breast cancer carboxy-terminal domain;


Pssm-ID: 214602 [Multi-domain]  Cd Length: 78  Bit Score: 45.44  E-value: 5.88e-06
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831510927   968 PDVFPVSSYKIYIDeqaIDQMSNSFMERFI-----AITTDETSLSITHFIVKTDENGTLVtdafqLLSWVLSGVLIMKNS 1042
Cdd:smart00292    1 PKLFKGKTFYITGS---FDKEERDELKELIealggKVTSSLSSKTTTHVIVGSPEGGKLE-----LLKAIALGIPIVKEE 72


                    ....*.
gi 1831510927  1043 WMKDCL 1048
Cdd:smart00292   73 WLLDCL 78
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
859-929 1.89e-05

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 48.03  E-value: 1.89e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1831510927  859 DGNNALVDAAQDINATNVLKAVKKGAYIDVYSKYGNTPLHVASKSGYPEIVEILIKNGADRTLLNAQNKTA 929
Cdd:COG0666    185 DGETPLHLAAENGHLEIVKLLLEAGADVNAKDNDGKTALDLAAENGNLEIVKLLLEAGADLNAKDKDGLTA 255
ANK smart00248
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four ...
 892-918 2.69e-05

ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.


Pssm-ID: 197603 [Multi-domain]  Cd Length: 30  Bit Score: 42.19  E-value: 2.69e-05
                            10        20
                    ....*....|....*....|....*..
gi 1831510927   892 YGNTPLHVASKSGYPEIVEILIKNGAD 918
Cdd:smart00248    1 DGRTPLHLAAENGNLEVVKLLLDKGAD 27
Ank_3 pfam13606
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ...
 892-918 8.23e-05

Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities.


Pssm-ID: 463933 [Multi-domain]  Cd Length: 30  Bit Score: 40.70  E-value: 8.23e-05
                           10        20
                   ....*....|....*....|....*..
gi 1831510927  892 YGNTPLHVASKSGYPEIVEILIKNGAD 918
Cdd:pfam13606    1 DGNTPLHLAARNGRLEIVKLLLENGAD 27
Ank_2 pfam12796
Ankyrin repeats (3 copies);
864-915 9.56e-05

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 42.41  E-value: 9.56e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1831510927  864 LVDAAQDiNATNVLKA-VKKGAYIDVYSKYGNTPLHVASKSGYPEIVEILIKN 915
Cdd:pfam12796    1 LHLAAKN-GNLELVKLlLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH 52
PHA03100 PHA03100
ankyrin repeat protein; Provisional
 864-954 1.59e-04

ankyrin repeat protein; Provisional


Pssm-ID: 222984 [Multi-domain]  Cd Length: 422  Bit Score: 45.43  E-value: 1.59e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831510927  864 LVDAAQDINATNVLKA-VKKGAYIDVYSKYGNTPLHVASKSGYPEIVEILIKNGADRTLLNAQNKT-AEQLIPPNYKTTD 941
Cdd:PHA03100   162 LIDKGVDINAKNRVNYlLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTpLHIAILNNNKEIF 241

                           90
                   ....*....|...
gi 1831510927  942 PESIERYEKIKLI 954
Cdd:PHA03100   242 KLLLNNGPSIKTI 254
PHA02876 PHA02876
ankyrin repeat protein; Provisional
 874-927 1.58e-03

ankyrin repeat protein; Provisional


Pssm-ID: 165207 [Multi-domain]  Cd Length: 682  Bit Score: 42.74  E-value: 1.58e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831510927  874 TNVLKAVKKGAYIDVYSKYGNTPLHVASKSG-YPEIVEILIKNGADRTLLNAQNK 927
Cdd:PHA02876   423 MSVKTLIDRGANVNSKNKDLSTPLHYACKKNcKLDVIEMLLDNGADVNAINIQNQ 477
Ank_2 pfam12796
Ankyrin repeats (3 copies);
897-929 1.83e-03

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 38.56  E-value: 1.83e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1831510927  897 LHVASKSGYPEIVEILIKNGADRTLLNAQNKTA 929
Cdd:pfam12796    1 LHLAAKNGNLELVKLLLENGADANLQDKNGRTA 33
PHA03100 PHA03100
ankyrin repeat protein; Provisional
 872-929 2.77e-03

ankyrin repeat protein; Provisional


Pssm-ID: 222984 [Multi-domain]  Cd Length: 422  Bit Score: 41.57  E-value: 2.77e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831510927  872 NATNVLKAVK----KGAYIDVYSKYGNTPLHVAS--KSGYPEIVEILIKNGADRTLLNAQNKTA 929
Cdd:PHA03100    81 NLTDVKEIVKllleYGANVNAPDNNGITPLLYAIskKSNSYSIVEYLLDNGANVNIKNSDGENL 144
Ank_4 pfam13637
Ankyrin repeats (many copies);
860-913 5.66e-03

Ankyrin repeats (many copies);


Pssm-ID: 372654 [Multi-domain]  Cd Length: 54  Bit Score: 36.10  E-value: 5.66e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831510927  860 GNNALVDAAQDiNATNVLKA-VKKGAYIDVYSKYGNTPLHVASKSGYPEIVEILI 913
Cdd:pfam13637    1 ELTALHAAAAS-GHLELLRLlLEKGADINAVDGNGETALHFAASNGNVEVLKLLL 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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