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Conserved domains on  [gi|1831511541|ref|NP_001366982|]
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F-box A protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FTH pfam01827
FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is ...
 216-358 3.13e-19

FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is found in many proteins from C. elegans. The domain is found associated with the F-box pfam00646. This domain is named FTH after FOG-2 homology domain.


:

Pssm-ID: 396410  Cd Length: 141  Bit Score: 83.39  E-value: 3.13e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831511541 216 EKSFEALQSILQLNGSMSAKYMSISGFiTADQTAKVLKNFKPGALEKILIEISVSPDaSIQNIVCMDQWTQATTL-ICGA 294
Cdd:pfam01827   1 EKIIESFLNILKSKKCLHVKEISLSGL-SFSEVASILPYFDAGTLEEIELSSESDED-QFEEIVELEQWKNAKSLkIEGS 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831511541 295 HILSTFVKHLTYFKlmDVNFCKTSLSKKDIMQFqKNVLAKSEKLEYCTFDEVRYNRSQFMIAFN 358
Cdd:pfam01827  79 SLSSFPIEHLFHFE--EFDIKLDSFSVEDAIKI-RDILLKSSTFQSCTIRSPDLNPIEIAKVFD 139
HTH_48 super family cl39372
HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase ...
 35-83 2.09e-05

HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains. This HTH domain binds in the DNA major groove to the transposons inverted repeats.


The actual alignment was detected with superfamily member pfam17906:

Pssm-ID: 465558 [Multi-domain]  Cd Length: 50  Bit Score: 41.35  E-value: 2.09e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1831511541  35 QRVLRGCILLQHLQGKESMEGFQLLSDSLGQGFMEYNHFNYWFEGLANG 83
Cdd:pfam17906   1 KIHLRHCILYEFLQGKSAAEAYRNICEVYGEDAVSERTFQRWFARFRSG 49
 
Name Accession Description Interval E-value
FTH pfam01827
FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is ...
 216-358 3.13e-19

FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is found in many proteins from C. elegans. The domain is found associated with the F-box pfam00646. This domain is named FTH after FOG-2 homology domain.


Pssm-ID: 396410  Cd Length: 141  Bit Score: 83.39  E-value: 3.13e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831511541 216 EKSFEALQSILQLNGSMSAKYMSISGFiTADQTAKVLKNFKPGALEKILIEISVSPDaSIQNIVCMDQWTQATTL-ICGA 294
Cdd:pfam01827   1 EKIIESFLNILKSKKCLHVKEISLSGL-SFSEVASILPYFDAGTLEEIELSSESDED-QFEEIVELEQWKNAKSLkIEGS 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831511541 295 HILSTFVKHLTYFKlmDVNFCKTSLSKKDIMQFqKNVLAKSEKLEYCTFDEVRYNRSQFMIAFN 358
Cdd:pfam01827  79 SLSSFPIEHLFHFE--EFDIKLDSFSVEDAIKI-RDILLKSSTFQSCTIRSPDLNPIEIAKVFD 139
HTH_48 pfam17906
HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase ...
 35-83 2.09e-05

HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains. This HTH domain binds in the DNA major groove to the transposons inverted repeats.


Pssm-ID: 465558 [Multi-domain]  Cd Length: 50  Bit Score: 41.35  E-value: 2.09e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1831511541  35 QRVLRGCILLQHLQGKESMEGFQLLSDSLGQGFMEYNHFNYWFEGLANG 83
Cdd:pfam17906   1 KIHLRHCILYEFLQGKSAAEAYRNICEVYGEDAVSERTFQRWFARFRSG 49
 
Name Accession Description Interval E-value
FTH pfam01827
FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is ...
 216-358 3.13e-19

FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is found in many proteins from C. elegans. The domain is found associated with the F-box pfam00646. This domain is named FTH after FOG-2 homology domain.


Pssm-ID: 396410  Cd Length: 141  Bit Score: 83.39  E-value: 3.13e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831511541 216 EKSFEALQSILQLNGSMSAKYMSISGFiTADQTAKVLKNFKPGALEKILIEISVSPDaSIQNIVCMDQWTQATTL-ICGA 294
Cdd:pfam01827   1 EKIIESFLNILKSKKCLHVKEISLSGL-SFSEVASILPYFDAGTLEEIELSSESDED-QFEEIVELEQWKNAKSLkIEGS 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831511541 295 HILSTFVKHLTYFKlmDVNFCKTSLSKKDIMQFqKNVLAKSEKLEYCTFDEVRYNRSQFMIAFN 358
Cdd:pfam01827  79 SLSSFPIEHLFHFE--EFDIKLDSFSVEDAIKI-RDILLKSSTFQSCTIRSPDLNPIEIAKVFD 139
HTH_48 pfam17906
HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase ...
 35-83 2.09e-05

HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains. This HTH domain binds in the DNA major groove to the transposons inverted repeats.


Pssm-ID: 465558 [Multi-domain]  Cd Length: 50  Bit Score: 41.35  E-value: 2.09e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1831511541  35 QRVLRGCILLQHLQGKESMEGFQLLSDSLGQGFMEYNHFNYWFEGLANG 83
Cdd:pfam17906   1 KIHLRHCILYEFLQGKSAAEAYRNICEVYGEDAVSERTFQRWFARFRSG 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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