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Conserved domains on  [gi|1820048651|ref|NP_001365702|]
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F-box/LRR-repeat protein 15 isoform 2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AMN1 super family cl39120
Antagonist of mitotic exit network protein 1; Amn1 has been functionally characterized in ...
 175-304 1.08e-15

Antagonist of mitotic exit network protein 1; Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model.


The actual alignment was detected with superfamily member cd09293:

Pssm-ID: 187754 [Multi-domain]  Cd Length: 226  Bit Score: 75.06  E-value: 1.08e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820048651 175 CPRLQRLSLAHCDWVDGLALRGLADRCPALEELDLTACRQLKDEAIVYLAqRRGAGLRSLSLAVNAN---VGDTAVQELA 251
Cdd:cd09293    51 CNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALA-TNCPKLQTINLGRHRNghlITDVSLSALG 129

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1820048651 252 RNCPQLEHLDLTGClRVGSDGVRTLAEYCpalrslrvrhCHHVAEPSLSRLRK 304
Cdd:cd09293   130 KNCTFLQTVGFAGC-DVTDKGVWELASGC----------SKSLERLSLNNCRN 171
F-box_FBXL15 cd22126
F-box domain found in F-box/LRR-repeat protein 15 (FBXL15) and similar proteins; FBXL15, also ...
 19-62 3.74e-13

F-box domain found in F-box/LRR-repeat protein 15 (FBXL15) and similar proteins; FBXL15, also called F-box only protein 37 (FBXO37), is the substrate-recognition component of an SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of Smad ubiquitination regulatory factor 1 (SMURF1), thereby acting as a positive regulator of the BMP signaling pathway. It is required for dorsal/ventral pattern formation and bone mass maintenance. It also mediates ubiquitination of SMURF2 and WWP2. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


:

Pssm-ID: 438898  Cd Length: 44  Bit Score: 62.90  E-value: 3.74e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1820048651  19 LLDLPWEDVLLPHVLNWVPLRQLLRLQRVSRAFRALVQLHLARL 62
Cdd:cd22126     1 LLDLPWEDVLFPHILPHLSLKDLFNLRRVSKAFKSLVDEYFSKL 44
FBXL3_LRR-like super family cl45928
Leucine-rich repeat domain of FBXL3 and related proteins; F-box/LRR-repeat proteins are part ...
 107-182 2.15e-03

Leucine-rich repeat domain of FBXL3 and related proteins; F-box/LRR-repeat proteins are part of Skp1-Cul1-F-box-protein (SCF) ubiquitin ligase complexes. They contain an F-Box, which binds to the core complex component SKP and a leucine-rich repeat (LRR) domain which gives substrate binding specificity. FBXL3 (F-box and leucine rich repeat protein 3) and FBXL21 have been shown to bind CRY1 repressors and are involved in regulation of circadian clock.


The actual alignment was detected with superfamily member cd23951:

Pssm-ID: 480268 [Multi-domain]  Cd Length: 349  Bit Score: 39.29  E-value: 2.15e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1820048651 107 GPQIPRAALARLLRDAEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVALAGCgQLSRRALGALAEGC-PRLQRLS 182
Cdd:cd23951   239 GRSVPKAVLGRVGQHCPRLVELVVCANGNSPIDEELIRIAKNCKQLSSLGLGEC-EVSCSALVEFAKLCgPRLTELY 314
 
Name Accession Description Interval E-value
AMN1 cd09293
Antagonist of mitotic exit network protein 1; Amn1 has been functionally characterized in ...
 175-304 1.08e-15

Antagonist of mitotic exit network protein 1; Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model.


Pssm-ID: 187754 [Multi-domain]  Cd Length: 226  Bit Score: 75.06  E-value: 1.08e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820048651 175 CPRLQRLSLAHCDWVDGLALRGLADRCPALEELDLTACRQLKDEAIVYLAqRRGAGLRSLSLAVNAN---VGDTAVQELA 251
Cdd:cd09293    51 CNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALA-TNCPKLQTINLGRHRNghlITDVSLSALG 129

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1820048651 252 RNCPQLEHLDLTGClRVGSDGVRTLAEYCpalrslrvrhCHHVAEPSLSRLRK 304
Cdd:cd09293   130 KNCTFLQTVGFAGC-DVTDKGVWELASGC----------SKSLERLSLNNCRN 171
F-box_FBXL15 cd22126
F-box domain found in F-box/LRR-repeat protein 15 (FBXL15) and similar proteins; FBXL15, also ...
 19-62 3.74e-13

F-box domain found in F-box/LRR-repeat protein 15 (FBXL15) and similar proteins; FBXL15, also called F-box only protein 37 (FBXO37), is the substrate-recognition component of an SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of Smad ubiquitination regulatory factor 1 (SMURF1), thereby acting as a positive regulator of the BMP signaling pathway. It is required for dorsal/ventral pattern formation and bone mass maintenance. It also mediates ubiquitination of SMURF2 and WWP2. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438898  Cd Length: 44  Bit Score: 62.90  E-value: 3.74e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1820048651  19 LLDLPWEDVLLPHVLNWVPLRQLLRLQRVSRAFRALVQLHLARL 62
Cdd:cd22126     1 LLDLPWEDVLFPHILPHLSLKDLFNLRRVSKAFKSLVDEYFSKL 44
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 19-55 9.35e-04

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 36.36  E-value: 9.35e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1820048651  19 LLDLPweDVLLPHVLNWVPLRQLLRLQRVSRAFRALV 55
Cdd:pfam00646   1 LLDLP--DDLLLEILSRLDPKDLLRLSLVSKRWRSLV 35
FBOX smart00256
A Receptor for Ubiquitination Targets;
22-56 1.06e-03

A Receptor for Ubiquitination Targets;


Pssm-ID: 197608  Cd Length: 41  Bit Score: 36.26  E-value: 1.06e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1820048651   22 LPWEdvLLPHVLNWVPLRQLLRLQRVSRAFRALVQ 56
Cdd:smart00256   1 LPDE--ILEEILSKLDPKDLLRLRKVSRKWRSLID 33
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
140-304 1.62e-03

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 39.92  E-value: 1.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820048651 140 EDLVPVLARNPQLRSVALAGCgQLSRraLGALAEGCPRLQRLSLAHCDWVD-GLALRGLadrcPALEELDLTACRqlkde 218
Cdd:COG4886   149 TDLPEPLGNLTNLKSLDLSNN-QLTD--LPEELGNLTNLKELDLSNNQITDlPEPLGNL----TNLEELDLSGNQ----- 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820048651 219 aivylaqrrgagLRSLSlavnanvgdtavQELArNCPQLEHLDLTGClrvgsdGVRTLAE--YCPALRSLRVRHCHHVAE 296
Cdd:COG4886   217 ------------LTDLP------------EPLA-NLTNLETLDLSNN------QLTDLPElgNLTNLEELDLSNNQLTDL 265


                  ....*...
gi 1820048651 297 PSLSRLRK 304
Cdd:COG4886   266 PPLANLTN 273
LRR_CC smart00367
Leucine-rich repeat - CC (cysteine-containing) subfamily;
201-226 2.05e-03

Leucine-rich repeat - CC (cysteine-containing) subfamily;


Pssm-ID: 197685 [Multi-domain]  Cd Length: 26  Bit Score: 35.07  E-value: 2.05e-03
                           10        20
                   ....*....|....*....|....*.
gi 1820048651  201 CPALEELDLTACRQLKDEAIVYLAQR 226
Cdd:smart00367   1 CPNLRELDLSGCTNITDEGLQALAKG 26
FBXL3_LRR-like cd23951
Leucine-rich repeat domain of FBXL3 and related proteins; F-box/LRR-repeat proteins are part ...
 107-182 2.15e-03

Leucine-rich repeat domain of FBXL3 and related proteins; F-box/LRR-repeat proteins are part of Skp1-Cul1-F-box-protein (SCF) ubiquitin ligase complexes. They contain an F-Box, which binds to the core complex component SKP and a leucine-rich repeat (LRR) domain which gives substrate binding specificity. FBXL3 (F-box and leucine rich repeat protein 3) and FBXL21 have been shown to bind CRY1 repressors and are involved in regulation of circadian clock.


Pssm-ID: 467830 [Multi-domain]  Cd Length: 349  Bit Score: 39.29  E-value: 2.15e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1820048651 107 GPQIPRAALARLLRDAEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVALAGCgQLSRRALGALAEGC-PRLQRLS 182
Cdd:cd23951   239 GRSVPKAVLGRVGQHCPRLVELVVCANGNSPIDEELIRIAKNCKQLSSLGLGEC-EVSCSALVEFAKLCgPRLTELY 314
 
Name Accession Description Interval E-value
AMN1 cd09293
Antagonist of mitotic exit network protein 1; Amn1 has been functionally characterized in ...
 175-304 1.08e-15

Antagonist of mitotic exit network protein 1; Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model.


Pssm-ID: 187754 [Multi-domain]  Cd Length: 226  Bit Score: 75.06  E-value: 1.08e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820048651 175 CPRLQRLSLAHCDWVDGLALRGLADRCPALEELDLTACRQLKDEAIVYLAqRRGAGLRSLSLAVNAN---VGDTAVQELA 251
Cdd:cd09293    51 CNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALA-TNCPKLQTINLGRHRNghlITDVSLSALG 129

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1820048651 252 RNCPQLEHLDLTGClRVGSDGVRTLAEYCpalrslrvrhCHHVAEPSLSRLRK 304
Cdd:cd09293   130 KNCTFLQTVGFAGC-DVTDKGVWELASGC----------SKSLERLSLNNCRN 171
AMN1 cd09293
Antagonist of mitotic exit network protein 1; Amn1 has been functionally characterized in ...
 109-294 5.63e-14

Antagonist of mitotic exit network protein 1; Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model.


Pssm-ID: 187754 [Multi-domain]  Cd Length: 226  Bit Score: 70.05  E-value: 5.63e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820048651 109 QIPRAALARLLR-DAEGLQELALAPCHEWLSDedlVPVLARNPQLRSVALAGCGQLSRRALGALAEGCPRLQRLSLAHCD 187
Cdd:cd09293    13 QITQSNISQLLRiLHSGLEWLELYMCPISDPP---LDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACE 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820048651 188 WVDGLALRGLADRCPALEELDL---TACRQLKDEAIVYLAqRRGAGLRSLSLAvNANVGDTAVQELARNC-PQLEHLDLT 263
Cdd:cd09293    90 NITDSGIVALATNCPKLQTINLgrhRNGHLITDVSLSALG-KNCTFLQTVGFA-GCDVTDKGVWELASGCsKSLERLSLN 167

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1820048651 264 GCLRVGSDGVRTLAE--YCPALRSLRVRHCHHV 294
Cdd:cd09293   168 NCRNLTDQSIPAILAsnYFPNLSVLEFRGCPLI 200
F-box_FBXL15 cd22126
F-box domain found in F-box/LRR-repeat protein 15 (FBXL15) and similar proteins; FBXL15, also ...
 19-62 3.74e-13

F-box domain found in F-box/LRR-repeat protein 15 (FBXL15) and similar proteins; FBXL15, also called F-box only protein 37 (FBXO37), is the substrate-recognition component of an SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of Smad ubiquitination regulatory factor 1 (SMURF1), thereby acting as a positive regulator of the BMP signaling pathway. It is required for dorsal/ventral pattern formation and bone mass maintenance. It also mediates ubiquitination of SMURF2 and WWP2. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438898  Cd Length: 44  Bit Score: 62.90  E-value: 3.74e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1820048651  19 LLDLPWEDVLLPHVLNWVPLRQLLRLQRVSRAFRALVQLHLARL 62
Cdd:cd22126     1 LLDLPWEDVLFPHILPHLSLKDLFNLRRVSKAFKSLVDEYFSKL 44
AMN1 cd09293
Antagonist of mitotic exit network protein 1; Amn1 has been functionally characterized in ...
 200-302 9.63e-12

Antagonist of mitotic exit network protein 1; Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model.


Pssm-ID: 187754 [Multi-domain]  Cd Length: 226  Bit Score: 63.89  E-value: 9.63e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820048651 200 RCPALEELDLTACRQLkDEAIVYLAqrRGAGLRSLSLAVNANVGDTAVQELARNCPQLEHLDLTGCLRVGSDGVRTLAEY 279
Cdd:cd09293    26 LHSGLEWLELYMCPIS-DPPLDQLS--NCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATN 102

                          90       100
                  ....*....|....*....|....*.
gi 1820048651 280 CPALRSL---RVRHCHHVAEPSLSRL 302
Cdd:cd09293   103 CPKLQTInlgRHRNGHLITDVSLSAL 128
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 19-55 9.35e-04

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 36.36  E-value: 9.35e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1820048651  19 LLDLPweDVLLPHVLNWVPLRQLLRLQRVSRAFRALV 55
Cdd:pfam00646   1 LLDLP--DDLLLEILSRLDPKDLLRLSLVSKRWRSLV 35
FBOX smart00256
A Receptor for Ubiquitination Targets;
22-56 1.06e-03

A Receptor for Ubiquitination Targets;


Pssm-ID: 197608  Cd Length: 41  Bit Score: 36.26  E-value: 1.06e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1820048651   22 LPWEdvLLPHVLNWVPLRQLLRLQRVSRAFRALVQ 56
Cdd:smart00256   1 LPDE--ILEEILSKLDPKDLLRLRKVSRKWRSLID 33
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
140-304 1.62e-03

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 39.92  E-value: 1.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820048651 140 EDLVPVLARNPQLRSVALAGCgQLSRraLGALAEGCPRLQRLSLAHCDWVD-GLALRGLadrcPALEELDLTACRqlkde 218
Cdd:COG4886   149 TDLPEPLGNLTNLKSLDLSNN-QLTD--LPEELGNLTNLKELDLSNNQITDlPEPLGNL----TNLEELDLSGNQ----- 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820048651 219 aivylaqrrgagLRSLSlavnanvgdtavQELArNCPQLEHLDLTGClrvgsdGVRTLAE--YCPALRSLRVRHCHHVAE 296
Cdd:COG4886   217 ------------LTDLP------------EPLA-NLTNLETLDLSNN------QLTDLPElgNLTNLEELDLSNNQLTDL 265


                  ....*...
gi 1820048651 297 PSLSRLRK 304
Cdd:COG4886   266 PPLANLTN 273
LRR_CC smart00367
Leucine-rich repeat - CC (cysteine-containing) subfamily;
201-226 2.05e-03

Leucine-rich repeat - CC (cysteine-containing) subfamily;


Pssm-ID: 197685 [Multi-domain]  Cd Length: 26  Bit Score: 35.07  E-value: 2.05e-03
                           10        20
                   ....*....|....*....|....*.
gi 1820048651  201 CPALEELDLTACRQLKDEAIVYLAQR 226
Cdd:smart00367   1 CPNLRELDLSGCTNITDEGLQALAKG 26
FBXL3_LRR-like cd23951
Leucine-rich repeat domain of FBXL3 and related proteins; F-box/LRR-repeat proteins are part ...
 107-182 2.15e-03

Leucine-rich repeat domain of FBXL3 and related proteins; F-box/LRR-repeat proteins are part of Skp1-Cul1-F-box-protein (SCF) ubiquitin ligase complexes. They contain an F-Box, which binds to the core complex component SKP and a leucine-rich repeat (LRR) domain which gives substrate binding specificity. FBXL3 (F-box and leucine rich repeat protein 3) and FBXL21 have been shown to bind CRY1 repressors and are involved in regulation of circadian clock.


Pssm-ID: 467830 [Multi-domain]  Cd Length: 349  Bit Score: 39.29  E-value: 2.15e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1820048651 107 GPQIPRAALARLLRDAEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVALAGCgQLSRRALGALAEGC-PRLQRLS 182
Cdd:cd23951   239 GRSVPKAVLGRVGQHCPRLVELVVCANGNSPIDEELIRIAKNCKQLSSLGLGEC-EVSCSALVEFAKLCgPRLTELY 314
F-box_FBXO1 cd22082
F-box domain found in F-box only protein 1 (FBXO1) and similar proteins; FBXO1, also called ...
 19-55 8.63e-03

F-box domain found in F-box only protein 1 (FBXO1) and similar proteins; FBXO1, also called FBX1, or cyclin-F, is a substrate-recognition component of an SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of CP110 during G2 phase, thereby acting as an inhibitor of centrosome reduplication. It is the largest among all cyclins and oscillates in the cell cycle like other cyclins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438854  Cd Length: 52  Bit Score: 34.14  E-value: 8.63e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1820048651  19 LLDLPwEDVLLpHVLNWVPLRQLLRLQRVSRAFRALV 55
Cdd:cd22082     2 LWSLP-EEVLL-HILKGLPIKDLLNMRAVHSRFKDLI 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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