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Conserved domains on  [gi|1799133332|ref|NP_001364721|]
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Cell division cycle protein 27 homolog [Caenorhabditis elegans]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 12124078)

tetratricopeptide repeat (TPR) protein with an ANAPC3 (anaphase-promoting complex, subunit 3) domain, such as human cell division cycle protein 27 homolog and Dictyostelium discoideum anaphase-promoting complex/cyclosome (APC/C) subunit 3

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  16896351|21153002|10517866|30708253
SCOP:  4001344

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 547-780 3.02e-27

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 112.13  E-value: 3.02e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 547 ALSALSQILTTESrERPQSWCAAGNCFSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLL 626
Cdd:COG2956    27 AIDLLEEALELDP-ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 627 SPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRS 706
Cdd:COG2956   106 DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLA 185

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1799133332 707 RLLFEANRNEECLVELDKLKASSPDEAFIFHLLARVHRRMGNTHLALLNYSWAAELDPRGEQNITDSNVINREE 780
Cdd:COG2956   186 ELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKE 259
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 38-118 5.96e-15

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


:

Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 70.36  E-value: 5.96e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332  38 KCYAFDDAIFLAELHYETDkSNNSESLLLYADCLYRANKKEECYGLLSSVKLSGARL--FYLLARVSYDLNKIDDCRGAL 115
Cdd:pfam12895   1 DQHQYKNAIFLAERLLAAE-PESPEDAYLLAQCLFLNGQYKRAYELLRKAKLNGSSLgcRYLFAQCLLKLKKYDEALDAL 79


                  ...
gi 1799133332 116 FEH 118
Cdd:pfam12895  80 GKA 82
Metaviral_G super family cl26626
Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. ...
 185-329 5.14e-04

Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated.


The actual alignment was detected with superfamily member pfam09595:

Pssm-ID: 462833 [Multi-domain]  Cd Length: 183  Bit Score: 41.86  E-value: 5.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 185 HTFEKHHRKSNGLYLDSPASSLKSETPSPNVPGPSsssaastaepsrleSSVRRSTRGTIASANR-----ETRNTTSNIT 259
Cdd:pfam09595  59 HPEQEHHENPPLNEAAKEAPSESEDAPDIDPNNQH--------------PSQDRSEAPPLEPAAKtkpseHEPANPPDAS 124

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1799133332 260 PRQSTPGSTPSrinptAPRKSS--RISEMTTRRTESSVTGSRSSlfteperphTRATHSSRNRANAALNSDT 329
Cdd:pfam09595 125 NRLSPPDASTA-----AIREARtfRKPSTGKRNNPSSAQSDQSP---------PRANHEAIGRANPFAMSST 182
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 547-780 3.02e-27

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 112.13  E-value: 3.02e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 547 ALSALSQILTTESrERPQSWCAAGNCFSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLL 626
Cdd:COG2956    27 AIDLLEEALELDP-ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 627 SPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRS 706
Cdd:COG2956   106 DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLA 185

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1799133332 707 RLLFEANRNEECLVELDKLKASSPDEAFIFHLLARVHRRMGNTHLALLNYSWAAELDPRGEQNITDSNVINREE 780
Cdd:COG2956   186 ELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKE 259
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 38-118 5.96e-15

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 70.36  E-value: 5.96e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332  38 KCYAFDDAIFLAELHYETDkSNNSESLLLYADCLYRANKKEECYGLLSSVKLSGARL--FYLLARVSYDLNKIDDCRGAL 115
Cdd:pfam12895   1 DQHQYKNAIFLAERLLAAE-PESPEDAYLLAQCLFLNGQYKRAYELLRKAKLNGSSLgcRYLFAQCLLKLKKYDEALDAL 79


                  ...
gi 1799133332 116 FEH 118
Cdd:pfam12895  80 GKA 82
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 574-764 1.12e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 78.20  E-value: 1.12e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 574 SLQRQHTQAIECMERAIQLD-KRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRdyRAWYGLGLVHLKKEQNL--TA 650
Cdd:TIGR02917 101 LLQGKFQQVLDELPGKTLLDdEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR--SLYAKLGLAQLALAENRfdEA 178

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 651 LTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRSRLLFEANRNEECLVELDKLKASSP 730
Cdd:TIGR02917 179 RALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAP 258

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1799133332 731 DEAFIFHLLARVHRRMGNTHLALLNYSWAAELDP 764
Cdd:TIGR02917 259 NSPLAHYLKALVDFQKKNYEDARETLQDALKSAP 292
Metaviral_G pfam09595
Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. ...
 185-329 5.14e-04

Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated.


Pssm-ID: 462833 [Multi-domain]  Cd Length: 183  Bit Score: 41.86  E-value: 5.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 185 HTFEKHHRKSNGLYLDSPASSLKSETPSPNVPGPSsssaastaepsrleSSVRRSTRGTIASANR-----ETRNTTSNIT 259
Cdd:pfam09595  59 HPEQEHHENPPLNEAAKEAPSESEDAPDIDPNNQH--------------PSQDRSEAPPLEPAAKtkpseHEPANPPDAS 124

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1799133332 260 PRQSTPGSTPSrinptAPRKSS--RISEMTTRRTESSVTGSRSSlfteperphTRATHSSRNRANAALNSDT 329
Cdd:pfam09595 125 NRLSPPDASTA-----AIREARtfRKPSTGKRNNPSSAQSDQSP---------PRANHEAIGRANPFAMSST 182
TPR_1 pfam00515
Tetratricopeptide repeat;
563-596 7.50e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.70  E-value: 7.50e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1799133332 563 PQSWCAAGNCFSLQRQHTQAIECMERAIQLDKRF 596
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 547-780 3.02e-27

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 112.13  E-value: 3.02e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 547 ALSALSQILTTESrERPQSWCAAGNCFSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLL 626
Cdd:COG2956    27 AIDLLEEALELDP-ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 627 SPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRS 706
Cdd:COG2956   106 DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLA 185

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1799133332 707 RLLFEANRNEECLVELDKLKASSPDEAFIFHLLARVHRRMGNTHLALLNYSWAAELDPRGEQNITDSNVINREE 780
Cdd:COG2956   186 ELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKE 259
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
561-785 4.43e-27

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 110.48  E-value: 4.43e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 561 ERPQSWCAAGNCFSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLV 640
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 641 HLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRSRLLFEANRNEECLV 720
Cdd:COG0457    86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1799133332 721 ELDKLKASSPDEAFIFHLLARVHRRMGNTHLALLNYSWAAELDPRGEQNITDSNVINREEYEDDE 785
Cdd:COG0457   166 LLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
590-786 2.77e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 102.39  E-value: 2.77e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 590 IQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLC 669
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 670 TLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRSRLLFEANRNEECLVELDKLKASSPDEAFIFHLLARVHRRMGNT 749
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1799133332 750 HLALLNYSWAAELDPRGEQNITDSNVINREEYEDDEY 786
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLL 197
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 565-765 7.75e-23

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 99.03  E-value: 7.75e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 565 SWCAAGNCFSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLKK 644
Cdd:COG2956    10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKA 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 645 EQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRSRLLFEANRNEECLVELDK 724
Cdd:COG2956    90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1799133332 725 LKASSPDEAFIFHLLARVHRRMGNTHLALLNYSWAAELDPR 765
Cdd:COG2956   170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD 210
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 596-765 3.41e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 88.25  E-value: 3.41e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 596 FAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIE 675
Cdd:COG2956     7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 676 QQRGQIDTALVLIDRALTLNPLDVACRFNRSRLLFEANRNEECLVELDKLKASSPDEAFIFHLLARVHRRMGNTHLALLN 755
Cdd:COG2956    87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                         170
                  ....*....|
gi 1799133332 756 YSWAAELDPR 765
Cdd:COG2956   167 LEKALKLDPD 176
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 576-750 3.95e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 92.36  E-value: 3.95e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 576 QRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLKKEQNLTALTNIQ 655
Cdd:COG3914    91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 656 KAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRSRLLFEANRNEECLVELDKLKASSPDEA-- 733
Cdd:COG3914   171 RALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSel 250

                         170       180
                  ....*....|....*....|....*..
gi 1799133332 734 --FIFH--------LLARVHRRMGNTH 750
Cdd:COG3914   251 spFALLylpdddpaELLALARAWAQLV 277
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 629-765 9.26e-18

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 80.62  E-value: 9.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 629 RDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRSRL 708
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1799133332 709 LFEANRNEECLVELDKLKASSPDEAFIFHLLARVHRRMGNTHLALLNYSWAAELDPR 765
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 541-747 1.47e-17

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 87.36  E-value: 1.47e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 541 HLQDTHALSALSQILTTESRERPQSWCAAGNCFSLQRQHT-----QAIECMERAIQLDKRFAYAYTLLGHELIVQDELDK 615
Cdd:COG3914    17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAaallaLAAGEAAAAAAALLLLAALLELAALLLQALGRYEE 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 616 AAGSFRSALLLSPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLN 695
Cdd:COG3914    97 ALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1799133332 696 PLDVACRFNRSRLLFEANRNEECLVELDKLKASSPDEAFIFHLLARVHRRMG 747
Cdd:COG3914   177 PDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQAC 228
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 564-696 6.48e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 77.92  E-value: 6.48e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 564 QSWCAAGNCFSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLK 643
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1799133332 644 KEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNP 696
Cdd:COG4783    85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 597-732 1.26e-16

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 77.15  E-value: 1.26e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 597 AYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQ 676
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1799133332 677 QRGQIDTALVLIDRALTLNPLDVACRFNRSRLLFEANRNEECLVELDKLKASSPDE 732
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 547-753 2.12e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 80.16  E-value: 2.12e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 547 ALSALSQILTTESrERPQSWCAAGNCFSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLL 626
Cdd:COG2956    61 AIRIHQKLLERDP-DRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 627 SPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRS 706
Cdd:COG2956   140 GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLA 219

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1799133332 707 RLLFEANRNEECLVELDKLKASSPDEAFIFhLLARVHRRMGNTHLAL 753
Cdd:COG2956   220 ELYEKLGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAAL 265
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 581-708 9.62e-16

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 74.27  E-value: 9.62e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 581 QAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNI 660
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1799133332 661 NPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRSRL 708
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 38-118 5.96e-15

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 70.36  E-value: 5.96e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332  38 KCYAFDDAIFLAELHYETDkSNNSESLLLYADCLYRANKKEECYGLLSSVKLSGARL--FYLLARVSYDLNKIDDCRGAL 115
Cdd:pfam12895   1 DQHQYKNAIFLAERLLAAE-PESPEDAYLLAQCLFLNGQYKRAYELLRKAKLNGSSLgcRYLFAQCLLKLKKYDEALDAL 79


                  ...
gi 1799133332 116 FEH 118
Cdd:pfam12895  80 GKA 82
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 574-764 1.12e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 78.20  E-value: 1.12e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 574 SLQRQHTQAIECMERAIQLD-KRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRdyRAWYGLGLVHLKKEQNL--TA 650
Cdd:TIGR02917 101 LLQGKFQQVLDELPGKTLLDdEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR--SLYAKLGLAQLALAENRfdEA 178

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 651 LTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRSRLLFEANRNEECLVELDKLKASSP 730
Cdd:TIGR02917 179 RALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAP 258

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1799133332 731 DEAFIFHLLARVHRRMGNTHLALLNYSWAAELDP 764
Cdd:TIGR02917 259 NSPLAHYLKALVDFQKKNYEDARETLQDALKSAP 292
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 615-733 2.62e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 70.42  E-value: 2.62e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 615 KAAGSFRSALLLSPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTL 694
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1799133332 695 NPLDVACRFNRSRLLFEANRNEECLVELDKLKASSPDEA 733
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 547-676 2.64e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 70.42  E-value: 2.64e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 547 ALSALSQILTTESrERPQSWCAAGNCFSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLL 626
Cdd:COG4235     2 AIARLRQALAANP-NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1799133332 627 SPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQ 676
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAE 130
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 576-764 4.67e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.80  E-value: 4.67e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 576 QRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAW------YGLGLVHLKKEQNLT 649
Cdd:COG3914    17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLllaallELAALLLQALGRYEE 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 650 ALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRSRLLFEANRNEECLVELDKLKASS 729
Cdd:COG3914    97 ALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1799133332 730 PDEAFIFHLLARVHRRMGNTHLALLNYSWAAELDP 764
Cdd:COG3914   177 PDNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 547-664 1.15e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 68.68  E-value: 1.15e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 547 ALSALSQILTtESRERPQSWCAAGNCFSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLL 626
Cdd:COG4783    23 AEALLEKALE-LDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKL 101

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1799133332 627 SPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTN 664
Cdd:COG4783   102 DPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
572-666 5.10e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 62.50  E-value: 5.10e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 572 CFSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAgSFRSALLLSPRDYRAWYGLGLVHLKKEQNLTAL 651
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|....*
gi 1799133332 652 TNIQKAVNINPTNRA 666
Cdd:COG3063    80 AYLERALELDPSALR 94
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 568-662 2.32e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 62.67  E-value: 2.32e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 568 AAGNCFSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLKKEQN 647
Cdd:COG5010    59 PSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQD 138

                          90
                  ....*....|....*
gi 1799133332 648 LTALTNIQKAVNINP 662
Cdd:COG5010   139 DEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
610-696 2.45e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 60.57  E-value: 2.45e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 610 QDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLKKEQNLTALtNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLID 689
Cdd:COG3063     5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83


                  ....*..
gi 1799133332 690 RALTLNP 696
Cdd:COG3063    84 RALELDP 90
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 573-777 3.77e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 67.03  E-value: 3.77e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 573 FSLQRQHTQ-AIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLKKEQNLTAL 651
Cdd:TIGR02917 542 LYLRTGNEEeAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 652 TNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRSRLLFEANRNEECLVELDKLKASSPD 731
Cdd:TIGR02917 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK 701

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1799133332 732 EAFIFHLLARVHRRMGNTHLALLNYSWAAELDPrgeqniTDSNVIN 777
Cdd:TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAP------SSQNAIK 741
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 587-697 7.80e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 61.13  E-value: 7.80e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 587 ERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRA 666
Cdd:COG5010    44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN 123

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1799133332 667 MLCTLSQIEQQRGQIDTALVLIDRALTLNPL 697
Cdd:COG5010   124 AYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 600-764 1.19e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 65.10  E-value: 1.19e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 600 YTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRG 679
Cdd:TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 680 QIDTALVLIDRALTLNPLDVACRFNRSRLLFEANRNEECLVELDKLKASSPDEAFIFHLLARVHRRMGNTHLALLNYSWA 759
Cdd:TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627


                  ....*
gi 1799133332 760 AELDP 764
Cdd:TIGR02917 628 LALQP 632
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 597-765 6.29e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.70  E-value: 6.29e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 597 AYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNIN---------PTNRAM 667
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGeaaaaaaalLLLAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 668 LCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRSRLLFEANRNEECLVELDKLKASSPDEAFIFHLLARVHRRMG 747
Cdd:COG3914    81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160

                         170
                  ....*....|....*...
gi 1799133332 748 NTHLALLNYSWAAELDPR 765
Cdd:COG3914   161 RLEEAIAALRRALELDPD 178
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
570-692 6.94e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 59.93  E-value: 6.94e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 570 GNCFSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLKKEQNLT 649
Cdd:COG4785    80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1799133332 650 ALTNIQKAVNINPTN--RAMLCTLSQIE------------------QQRGQIDTALVLIDRAL 692
Cdd:COG4785   160 AIADLEKALELDPNDpeRALWLYLAERKldpekalallledwatayLLQGDTEEARELFKLAL 222
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
674-765 3.24e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 54.79  E-value: 3.24e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 674 IEQQRGQIDTALVLIDRALTLNPLDVACRFNRSRLLFEANRNEECLvELDKLKASSPDEAFIFHLLARVHRRMGNTHLAL 753
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 1799133332 754 LNYSWAAELDPR 765
Cdd:COG3063    80 AYLERALELDPS 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
573-759 5.28e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 57.23  E-value: 5.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 573 FSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLLsPRDYRAWYGLGLVHLKKEQNLTALT 652
Cdd:COG4785    16 AAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIA 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 653 NIQKAVNINPT------NRAMLCTlsqieqQRGQIDTALVLIDRALTLNPLDVACRFNRSRLLFEANRNEECLVELDKLK 726
Cdd:COG4785    95 DFDQALELDPDlaeaynNRGLAYL------LLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKAL 168

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1799133332 727 ASSPDEAFIFHLLARVHRRMG-NTHLALLNYSWA 759
Cdd:COG4785   169 ELDPNDPERALWLYLAERKLDpEKALALLLEDWA 202
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 547-764 1.10e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 58.94  E-value: 1.10e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 547 ALSALSQILTTESRERPqSWCAAGNCFSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLL 626
Cdd:TIGR02917 178 ARALIDEVLTADPGNVD-ALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKK 256

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 627 SPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRS 706
Cdd:TIGR02917 257 APNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLA 336

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1799133332 707 RLLFEANRNEECLVELDKLKASSPDEAFIFHLLARVHRRMGNTHLALLNYSWAAELDP 764
Cdd:TIGR02917 337 SIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 650-778 2.14e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.47  E-value: 2.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 650 ALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRSRLLFEANRNEECLVELDKLKASS 729
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1799133332 730 PDEAFIFHLLARVHRRMGNTHLALLNYSWAAELDPRGEQNITDSNVINR 778
Cdd:COG4235    82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAE 130
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 623-764 1.06e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 52.27  E-value: 1.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 623 ALLLSPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACR 702
Cdd:COG5010    12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELY 91

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1799133332 703 FNRSRLLFEANRNEECLVELDKLKASSPDEAFIFHLLARVHRRMGNTHLALLNYSWAAELDP 764
Cdd:COG5010    92 YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
640-731 1.27e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.17  E-value: 1.27e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 640 VHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLiDRALTLNPLDVACRFNRSRLLFEANRNEECL 719
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 1799133332 720 VELDKLKASSPD 731
Cdd:COG3063    80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 588-730 1.42e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.88  E-value: 1.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 588 RAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAM 667
Cdd:COG5010    11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1799133332 668 LCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRSRLLFEANRNEECLVELDKLKASSP 730
Cdd:COG5010    91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 545-764 2.93e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 54.32  E-value: 2.93e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 545 THALSALSQILTTESRErPQSWCAAGNCFSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSAL 624
Cdd:TIGR02917 346 DEAIATLSPALGLDPDD-PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAA 424

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 625 LLSPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFN 704
Cdd:TIGR02917 425 QLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAAN 504

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 705 RSRLLFEANRNEECLVELDKLKASSPDEAFIFHLLARVHRRMGNTHLALLNYSWAAELDP 764
Cdd:TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP 564
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 547-764 1.93e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.62  E-value: 1.93e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 547 ALSALSQiLTTESRERPQSWCAAGNCFSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLL 626
Cdd:TIGR02917 450 ALAAAKK-LEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI 528

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 627 SPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVACRFNRS 706
Cdd:TIGR02917 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLG 608

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1799133332 707 RLLFEANRNEECLVELDKLKASSPDEAFIFHLLARVHRRMGNTHLALLNYSWAAELDP 764
Cdd:TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 601-727 3.88e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.47  E-value: 3.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 601 TLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLKKEqNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQ 680
Cdd:TIGR02917 774 TALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELK-DPRALEYAERALKLAPNIPAILDTLGWLLVEKGE 852

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1799133332 681 IDTALVLIDRALTLNPLDVACRFNRSRLLFEANRNEECLVELDKLKA 727
Cdd:TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 638-753 5.43e-05

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 46.06  E-value: 5.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 638 GLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNP-LDVACRFNRSRLLFEANRNE 716
Cdd:COG3071    23 GLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPeAELAVLLTRAELLLDQGQAE 102

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1799133332 717 ECLVELDKLKASSPDEAFIFHLLARVHRRMGNTHLAL 753
Cdd:COG3071   103 QALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELL 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 547-628 7.49e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.80  E-value: 7.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 547 ALSALSQILTTESRErPQSWCAAGNCFSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLL 626
Cdd:COG5010    73 SLALLEQALQLDPNN-PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151


                  ..
gi 1799133332 627 SP 628
Cdd:COG5010   152 SP 153
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
547-692 8.26e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.00  E-value: 8.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 547 ALSALSQILTTESrERPQSWCAAGNCFSLQRQHTQAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLL 626
Cdd:COG0457    95 ALEDYDKALELDP-DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAA 173

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1799133332 627 SPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRAL 692
Cdd:COG0457   174 ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239
Metaviral_G pfam09595
Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. ...
 185-329 5.14e-04

Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated.


Pssm-ID: 462833 [Multi-domain]  Cd Length: 183  Bit Score: 41.86  E-value: 5.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 185 HTFEKHHRKSNGLYLDSPASSLKSETPSPNVPGPSsssaastaepsrleSSVRRSTRGTIASANR-----ETRNTTSNIT 259
Cdd:pfam09595  59 HPEQEHHENPPLNEAAKEAPSESEDAPDIDPNNQH--------------PSQDRSEAPPLEPAAKtkpseHEPANPPDAS 124

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1799133332 260 PRQSTPGSTPSrinptAPRKSS--RISEMTTRRTESSVTGSRSSlfteperphTRATHSSRNRANAALNSDT 329
Cdd:pfam09595 125 NRLSPPDASTA-----AIREARtfRKPSTGKRNNPSSAQSDQSP---------PRANHEAIGRANPFAMSST 182
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 547-747 1.09e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 42.28  E-value: 1.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 547 ALSALSQILTTESRERPQSwCAAGNCFSLQRQHTQAiECMERAIQLDKRFAYAYTLLGH---ELIVQDELDKAAGSFRSA 623
Cdd:TIGR00990 243 AESKAKEILETKPENLPSV-TFVGNYLQSFRPKPRP-AGLEDSNELDEETGNGQLQLGLkspESKADESYEEAARAFEKA 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 624 LL---LSPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPLDVA 700
Cdd:TIGR00990 321 LDlgkLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD 400

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1799133332 701 CRFNRSRLLFEANRNEECLVELDKLKASSPDEAFIFHLLARVHRRMG 747
Cdd:TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG 447
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 576-666 1.54e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.82  E-value: 1.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 576 QRQHTQAIECMERAIQL---DKRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYR---AWYGLGLVHLKKEQNLT 649
Cdd:COG1729     6 AGDYDEAIAAFKAFLKRypnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYDK 85

                          90
                  ....*....|....*..
gi 1799133332 650 ALTNIQKAVNINPTNRA 666
Cdd:COG1729    86 ARATLEELIKKYPDSEA 102
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 634-768 2.35e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.48  E-value: 2.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 634 WYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDtalvlidRALTLnpldvacrfnrsrllfean 713
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYD-------RAIRI------------------- 64

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1799133332 714 rneeclveLDKLKASSPDEAFIFHLLARVHRRMGNTHLALLNYSWAAELDPRGEQ 768
Cdd:COG2956    65 --------HQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE 111
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 581-785 3.76e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 3.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 581 QAIECMERAIQLDKRFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGL-GLVHLKKEQNLTALTNIQKAVN 659
Cdd:TIGR02917  74 AAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALrGLAYLGLGQLELAQKSYEQALA 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133332 660 INPTNRAMLCTLSQIEQQRGQIDTALVLIDRALTLNPldvacrfnrsrllfeanrneeclveldklkasSPDEAFIfhLL 739
Cdd:TIGR02917 154 IDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP--------------------------------GNVDALL--LK 199

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1799133332 740 ARVHRRMGNTHLALLNYSWAAELDPRGEQNITDSNVINREEYEDDE 785
Cdd:TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEE 245
TPR_1 pfam00515
Tetratricopeptide repeat;
563-596 7.50e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.70  E-value: 7.50e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1799133332 563 PQSWCAAGNCFSLQRQHTQAIECMERAIQLDKRF 596
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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