NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1799133435|ref|NP_001364607|]
View 

Nucleotid_trans domain-containing protein [Caenorhabditis elegans]

Protein Classification

DUF1647 domain-containing protein( domain architecture ID 10544652)

DUF1647 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF1647 pfam07801
Protein of unknown function (DUF1647); The sequences making up this family are all derived ...
 33-174 4.12e-72

Protein of unknown function (DUF1647); The sequences making up this family are all derived from hypothetical proteins expressed by C. elegans. The region in question is approximately 160 amino acids long. The GO annotation for this protein indicates the protein to be involved in nematode larval development and to have a positive regulation on growth rate.


:

Pssm-ID: 369527  Cd Length: 141  Bit Score: 220.16  E-value: 4.12e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133435  33 CFCKSRKSGKTYDFCYENPRNPESIGAKFNCNLLDTLEELGLISETERIPSLSSIINDESAVVFVSSTSDDHLHLSLKSY 112
Cdd:pfam07801   1 CCCKSRKTGKSYDFCYKDPQNSSSIGKKFDCSLLTTLEDLKLLETPEPFVDLSEIIKNEDDVVFVSATSDDHFFNADSSI 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1799133435 113 NSIREFYPHHKYILHGLNLSAAYIDKLPrNDENFEFRAFNTSTYPKFVSNWMTYNFKPLLMA 174
Cdd:pfam07801  81 SSIRKYYPHHKYILYGLNLSYYYISLLP-KDPNFEFRVFNTSKYPKYVTNWMEYRFKPLILA 141
 
Name Accession Description Interval E-value
DUF1647 pfam07801
Protein of unknown function (DUF1647); The sequences making up this family are all derived ...
 33-174 4.12e-72

Protein of unknown function (DUF1647); The sequences making up this family are all derived from hypothetical proteins expressed by C. elegans. The region in question is approximately 160 amino acids long. The GO annotation for this protein indicates the protein to be involved in nematode larval development and to have a positive regulation on growth rate.


Pssm-ID: 369527  Cd Length: 141  Bit Score: 220.16  E-value: 4.12e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133435  33 CFCKSRKSGKTYDFCYENPRNPESIGAKFNCNLLDTLEELGLISETERIPSLSSIINDESAVVFVSSTSDDHLHLSLKSY 112
Cdd:pfam07801   1 CCCKSRKTGKSYDFCYKDPQNSSSIGKKFDCSLLTTLEDLKLLETPEPFVDLSEIIKNEDDVVFVSATSDDHFFNADSSI 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1799133435 113 NSIREFYPHHKYILHGLNLSAAYIDKLPrNDENFEFRAFNTSTYPKFVSNWMTYNFKPLLMA 174
Cdd:pfam07801  81 SSIRKYYPHHKYILYGLNLSYYYISLLP-KDPNFEFRVFNTSKYPKYVTNWMEYRFKPLILA 141
 
Name Accession Description Interval E-value
DUF1647 pfam07801
Protein of unknown function (DUF1647); The sequences making up this family are all derived ...
 33-174 4.12e-72

Protein of unknown function (DUF1647); The sequences making up this family are all derived from hypothetical proteins expressed by C. elegans. The region in question is approximately 160 amino acids long. The GO annotation for this protein indicates the protein to be involved in nematode larval development and to have a positive regulation on growth rate.


Pssm-ID: 369527  Cd Length: 141  Bit Score: 220.16  E-value: 4.12e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799133435  33 CFCKSRKSGKTYDFCYENPRNPESIGAKFNCNLLDTLEELGLISETERIPSLSSIINDESAVVFVSSTSDDHLHLSLKSY 112
Cdd:pfam07801   1 CCCKSRKTGKSYDFCYKDPQNSSSIGKKFDCSLLTTLEDLKLLETPEPFVDLSEIIKNEDDVVFVSATSDDHFFNADSSI 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1799133435 113 NSIREFYPHHKYILHGLNLSAAYIDKLPrNDENFEFRAFNTSTYPKFVSNWMTYNFKPLLMA 174
Cdd:pfam07801  81 SSIRKYYPHHKYILYGLNLSYYYISLLP-KDPNFEFRVFNTSKYPKYVTNWMEYRFKPLILA 141
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH