NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1778193455|ref|NP_001363834|]
View 

uncharacterized protein C22orf15 isoform 5 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Il2rg super family cl24449
Putative Interleukin 2 receptor, gamma chain; This family of proteins is found in eukaryotes. ...
 7-83 1.82e-24

Putative Interleukin 2 receptor, gamma chain; This family of proteins is found in eukaryotes. Proteins in this family are typically between 137 and 197 amino acids in length.


The actual alignment was detected with superfamily member pfam15874:

Pssm-ID: 464916  Cd Length: 93  Bit Score: 88.91  E-value: 1.82e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1778193455   7 FGAGCSVLVNTSCRLVNLTAHLRQKAGLPPDATIALLAEDGNLVSLEEdlkegASRAQTMGNSLLKERAIYVLVRII 83
Cdd:pfam15874   1 YGDNQQFLVNPNCRVVLLLYHIKKKCGLPKEAIIDLCDETGKLKFLSL-----KPPEQDYASKLLTARGTYILVKVE 72
 
Name Accession Description Interval E-value
Il2rg pfam15874
Putative Interleukin 2 receptor, gamma chain; This family of proteins is found in eukaryotes. ...
 7-83 1.82e-24

Putative Interleukin 2 receptor, gamma chain; This family of proteins is found in eukaryotes. Proteins in this family are typically between 137 and 197 amino acids in length.


Pssm-ID: 464916  Cd Length: 93  Bit Score: 88.91  E-value: 1.82e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1778193455   7 FGAGCSVLVNTSCRLVNLTAHLRQKAGLPPDATIALLAEDGNLVSLEEdlkegASRAQTMGNSLLKERAIYVLVRII 83
Cdd:pfam15874   1 YGDNQQFLVNPNCRVVLLLYHIKKKCGLPKEAIIDLCDETGKLKFLSL-----KPPEQDYASKLLTARGTYILVKVE 72
 
Name Accession Description Interval E-value
Il2rg pfam15874
Putative Interleukin 2 receptor, gamma chain; This family of proteins is found in eukaryotes. ...
 7-83 1.82e-24

Putative Interleukin 2 receptor, gamma chain; This family of proteins is found in eukaryotes. Proteins in this family are typically between 137 and 197 amino acids in length.


Pssm-ID: 464916  Cd Length: 93  Bit Score: 88.91  E-value: 1.82e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1778193455   7 FGAGCSVLVNTSCRLVNLTAHLRQKAGLPPDATIALLAEDGNLVSLEEdlkegASRAQTMGNSLLKERAIYVLVRII 83
Cdd:pfam15874   1 YGDNQQFLVNPNCRVVLLLYHIKKKCGLPKEAIIDLCDETGKLKFLSL-----KPPEQDYASKLLTARGTYILVKVE 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH