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Conserved domains on  [gi|1767294013|ref|NP_001362143|]
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Rab-GAP TBC domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK07003 super family cl35530
DNA polymerase III subunit gamma/tau;
211-329 2.49e-10

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK07003:

Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 64.10  E-value: 2.49e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 211 APPEGKRPRTPNDLDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSA 290
Cdd:PRK07003  425 APPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATP 504

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1767294013 291 APSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPS 329
Cdd:PRK07003  505 AAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPA 543
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 91-344 8.70e-03

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 8.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013   91 LPANDEAQVEESAPADEPAPeeekpqeeapaeepapaeeaPQEEVPAEEPVAEETAPAEEAAVEEPVVEEAAPVEEAPEA 170
Cdd:PHA03247  2750 TPGGPARPARPPTTAGPPAP--------------------APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPA 2809

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013  171 EETAPAEEPLIEVAVEEAPAEEPVAEEAEPEAEKQEFELQAPPEG---------KRPRTPNDLDNPTADEEPAAELEADA 241
Cdd:PHA03247  2810 AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGsvapggdvrRRPPSRSPAAKPAAPARPPVRRLARP 2889

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013  242 GSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQ---SSVPPTP------- 311
Cdd:PHA03247  2890 AVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAgepSGAVPQPwlgalvp 2969

                          250       260       270
                   ....*....|....*....|....*....|....
gi 1767294013  312 -KSAVPSEAPPTPRSAAPSDVPPTPKSNGHIANG 344
Cdd:PHA03247  2970 gRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSR 3003
 
Name Accession Description Interval E-value
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
211-329 2.49e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 64.10  E-value: 2.49e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 211 APPEGKRPRTPNDLDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSA 290
Cdd:PRK07003  425 APPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATP 504

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1767294013 291 APSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPS 329
Cdd:PRK07003  505 AAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPA 543
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 209-351 4.07e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 47.22  E-value: 4.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 209 LQAPPEGKRPRTPNDLDNPTadeePAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPK 288
Cdd:pfam05109 458 LTAPASTGPTVSTADVTSPT----PAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPN 533

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 289 SAAPSEVPLTPKSAAQSSVP-----------PTPKSAVPS---------EAPPTPRSAAPSDVPPTPKSNghIANGSIPG 348
Cdd:pfam05109 534 ATSPTLGKTSPTSAVTTPTPnatsptpavttPTPNATIPTlgktsptsaVTTPTPNATSPTVGETSPQAN--TTNHTLGG 611


                  ...
gi 1767294013 349 TPS 351
Cdd:pfam05109 612 TSS 614
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 212-338 1.97e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 41.29  E-value: 1.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 212 PPEGKRPRTPNDLDnPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPksAAPSEVPPTPKSAA 291
Cdd:NF040712  200 ATVPRLAREPADAR-PEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGP--GAAPAAEPDEATRD 276

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1767294013 292 PSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKSN 338
Cdd:NF040712  277 AGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPK 323
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 204-344 3.00e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 41.15  E-value: 3.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 204 KQEFELqAPPEGKRPRTPNDLDNPTADEEpAAELEADAGSEVPPTPKTAASE-KQSVPPTPKSAAPSEVPPTPkSAAPSE 282
Cdd:NF033838  352 EAELEL-VKEEAKEPRNEEKIKQAKAKVE-SKKAEATRLEKIKTDRKKAEEEaKRKAAEEDKVKEKPAEQPQP-APAPQP 428

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1767294013 283 VPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSA------VPSEAPPTPRSAAPsdvPPTPKSNGHIANG 344
Cdd:NF033838  429 EKPAPKPEKPAEQPKAEKPADQQAEEDYARRSeeeynrLTQQQPPKTEKPAQ---PSTPKTGWKQENG 493
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 249-330 4.91e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 40.26  E-value: 4.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 249 PKTAASEKQSVPPTPKSAapsevpPTPKSAAPseVPPTPKSAAPsevpltPKSAAQSSVPPTPKSAVPSEAPPTPRSAAP 328
Cdd:TIGR00601  77 PKTGTGKVAPPAATPTSA------PTPTPSPP--ASPASGMSAA------PASAVEEKSPSEESATATAPESPSTSVPSS 142


                  ..
gi 1767294013 329 SD 330
Cdd:TIGR00601 143 GS 144
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
266-337 6.03e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 40.37  E-value: 6.03e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1767294013 266 AAPSEVPPTPKSAAPsEVPPTPKSAAPSEVPlTPKSAAQSSVPPTPKSAVPsEAPPTPRSAAPSDVPPTPKS 337
Cdd:COG5373    38 AEAAEAASAPAEPEP-EAAAAATAAAPEAAP-APVPEAPAAPPAAAEAPAP-AAAAPPAEAEPAAAPAAASS 106
PHA03247 PHA03247
large tegument protein UL36; Provisional
 91-344 8.70e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 8.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013   91 LPANDEAQVEESAPADEPAPeeekpqeeapaeepapaeeaPQEEVPAEEPVAEETAPAEEAAVEEPVVEEAAPVEEAPEA 170
Cdd:PHA03247  2750 TPGGPARPARPPTTAGPPAP--------------------APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPA 2809

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013  171 EETAPAEEPLIEVAVEEAPAEEPVAEEAEPEAEKQEFELQAPPEG---------KRPRTPNDLDNPTADEEPAAELEADA 241
Cdd:PHA03247  2810 AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGsvapggdvrRRPPSRSPAAKPAAPARPPVRRLARP 2889

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013  242 GSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQ---SSVPPTP------- 311
Cdd:PHA03247  2890 AVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAgepSGAVPQPwlgalvp 2969

                          250       260       270
                   ....*....|....*....|....*....|....
gi 1767294013  312 -KSAVPSEAPPTPRSAAPSDVPPTPKSNGHIANG 344
Cdd:PHA03247  2970 gRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSR 3003
 
Name Accession Description Interval E-value
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
211-329 2.49e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 64.10  E-value: 2.49e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 211 APPEGKRPRTPNDLDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSA 290
Cdd:PRK07003  425 APPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATP 504

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1767294013 291 APSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPS 329
Cdd:PRK07003  505 AAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPA 543
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 248-345 6.14e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 56.36  E-value: 6.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 248 TPKTAAsekqsVPPTPKSAAPSEVPPTPksaAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPP----TPKSAVPSEAPPTP 323
Cdd:PRK14950  361 VPVPAP-----QPAKPTAAAPSPVRPTP---APSTRPKAAAAANIPPKEPVRETATPPPVPPrpvaPPVPHTPESAPKLT 432

                          90       100
                  ....*....|....*....|....*...
gi 1767294013 324 RSAAPSDV------PPTPKSNGHIANGS 345
Cdd:PRK14950  433 RAAIPVDEkpkytpPAPPKEEEKALIAD 460
PHA03247 PHA03247
large tegument protein UL36; Provisional
 211-350 9.02e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.10  E-value: 9.02e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013  211 APPEGKRPRTPNDLDNPTADEEPAAeleaDAGSEVPPTPKTAASEKQSVPPT-PKSAAPSEVPPTPKSAAPSEVPPTPKS 289
Cdd:PHA03247  2726 AAARQASPALPAAPAPPAVPAGPAT----PGGPARPARPPTTAGPPAPAPPAaPAAGPPRRLTRPAVASLSESRESLPSP 2801

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1767294013  290 AAPSEVPlTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKSNGHIANGSIPGTP 350
Cdd:PHA03247  2802 WDPADPP-AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGD 2861
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 208-337 1.08e-07

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 55.85  E-value: 1.08e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 208 ELQAPPEGKRPRTPNDLDnPTADEEPAAELEadagsevpPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTP 287
Cdd:PTZ00449  539 ESDEPKEGGKPGETKEGE-VGKKPGPAKEHK--------PSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRP 609

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1767294013 288 KSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKS 337
Cdd:PTZ00449  610 KSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKP 659
PHA03247 PHA03247
large tegument protein UL36; Provisional
 211-350 1.24e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 55.71  E-value: 1.24e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013  211 APPEGKRPRTPNDLDNPTADEEPAAELEADAGSEVPPTPktAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPP----- 285
Cdd:PHA03247  2591 APPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPP--SPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRprrar 2668

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013  286 ----TPKSAAPSEVPLTPksAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKSNG-HIANGSIPGTP 350
Cdd:PHA03247  2669 rlgrAAQASSPPQRPRRR--AARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGpAAARQASPALP 2736
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 246-342 4.96e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 53.27  E-value: 4.96e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 246 PPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSaaqssvppTPKSAVPSEAPPTPRS 325
Cdd:PRK14950  363 VPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVA--------PPVPHTPESAPKLTRA 434

                          90       100
                  ....*....|....*....|..
gi 1767294013 326 AAPSDV-----PPTPKSNGHIA 342
Cdd:PRK14950  435 AIPVDEkpkytPPAPPKEEEKA 456
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 207-303 6.39e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 53.36  E-value: 6.39e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013  207 FELQAPPEGKRPRTPndlDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPT 286
Cdd:PRK12270    33 FADYGPGSTAAPTAA---AAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPA 109

                           90
                   ....*....|....*..
gi 1767294013  287 PKSAAPSEVPLTPKSAA 303
Cdd:PRK12270   110 AAAVEDEVTPLRGAAAA 126
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 252-337 1.16e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 52.02  E-value: 1.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 252 AASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPsevpltpksAAQSSVPPTPKSAVPSEAPPTPRSAAPSDV 331
Cdd:PRK14951  375 PAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPA---------APPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445


                  ....*.
gi 1767294013 332 PPTPKS 337
Cdd:PRK14951  446 ALAPAP 451
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 255-336 2.01e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 51.81  E-value: 2.01e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013  255 EKQSVPPT---------PKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRS 325
Cdd:PRK12270    21 DPNSVDPSwreffadygPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP 100

                           90
                   ....*....|.
gi 1767294013  326 AAPSDVPPTPK 336
Cdd:PRK12270   101 AAAAAAAPAAA 111
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 224-325 2.23e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 51.43  E-value: 2.23e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013  224 LDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPsevPPTPKSAAPSEVPLTPKSAA 303
Cdd:PRK12270    19 LADPNSVDPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPP---AAAAPAAPPKPAAAAAAAAA 95

                           90       100
                   ....*....|....*....|..
gi 1767294013  304 QSSVPPTPKSAVPSEAPPTPRS 325
Cdd:PRK12270    96 PAAPPAAAAAAAPAAAAVEDEV 117
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
210-324 1.54e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 48.62  E-value: 1.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 210 QAPPEGKRPRTPNDLDNPtADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPkSAAPSEVPPTPKSAAPSEVPPTPKS 289
Cdd:PRK14971  364 QKGDDASGGRGPKQHIKP-VFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQS-ATQPAGTPPTVSVDPPAAVPVNPPS 441

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1767294013 290 AAPSEVPLTPKSAAQssvpPTPKSAVPSEAPPTPR 324
Cdd:PRK14971  442 TAPQAVRPAQFKEEK----KIPVSKVSSLGPSTLR 472
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 263-334 1.66e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 48.56  E-value: 1.66e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1767294013 263 PKSAAPSEVPPTPKSAAPsevpptPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPT 334
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPAR------PEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAA 431
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 227-329 2.48e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 48.06  E-value: 2.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 227 PTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSS 306
Cdd:PRK07764  401 AAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAP 480

                          90       100
                  ....*....|....*....|...
gi 1767294013 307 VPPTPKSAVPSEAPPTPRSAAPS 329
Cdd:PRK07764  481 APAPPAAPAPAAAPAAPAAPAAP 503
flhF PRK06995
flagellar biosynthesis protein FlhF;
229-335 2.50e-05

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 47.65  E-value: 2.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 229 ADEEPAAELEADAGSEVPPTPKTAASEKQSVPP--TPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSS 306
Cdd:PRK06995   44 ADSDLAALAPPAAAAPAAAQPPPAAAPAAVSRPaaPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERA 123

                          90       100
                  ....*....|....*....|....*....
gi 1767294013 307 VPPTPKSAVPSEAPPTPRSAAPSDVPPTP 335
Cdd:PRK06995  124 AAENAARRLARAAAAAPRPRVPADAAAAV 152
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
227-333 3.27e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.56  E-value: 3.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 227 PTADEEPAAELEADAGSEVPPTPKTAA-SEKQSVPPTPKSAAPSEVP---------PTPKSAAPSEVPPTPKSAAPsevp 296
Cdd:PRK12323  388 AAAAPAAAAPAPAAPPAAPAAAPAAAAaARAVAAAPARRSPAPEALAaarqasargPGGAPAPAPAPAAAPAAAAR---- 463

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1767294013 297 ltPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPP 333
Cdd:PRK12323  464 --PAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPP 498
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 209-351 4.07e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 47.22  E-value: 4.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 209 LQAPPEGKRPRTPNDLDNPTadeePAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPK 288
Cdd:pfam05109 458 LTAPASTGPTVSTADVTSPT----PAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPN 533

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 289 SAAPSEVPLTPKSAAQSSVP-----------PTPKSAVPS---------EAPPTPRSAAPSDVPPTPKSNghIANGSIPG 348
Cdd:pfam05109 534 ATSPTLGKTSPTSAVTTPTPnatsptpavttPTPNATIPTlgktsptsaVTTPTPNATSPTVGETSPQAN--TTNHTLGG 611


                  ...
gi 1767294013 349 TPS 351
Cdd:pfam05109 612 TSS 614
PRK10856 PRK10856
cytoskeleton protein RodZ;
252-335 4.84e-05

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 46.17  E-value: 4.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 252 AASEKQSVPPTPKSAAPSevPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSS--VPPTPKSAVPSEAPPTPRSAAPS 329
Cdd:PRK10856  155 SQNSGQSVPLDTSTTTDP--ATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNavVAPSQANVDTAATPAPAAPATPD 232


                  ....*.
gi 1767294013 330 DVPPTP 335
Cdd:PRK10856  233 GAAPLP 238
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 227-340 4.86e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 4.86e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 227 PTADEEPAAELEADAGSEvPPTPKTAASEKQSVPPTPKSA-APSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQS 305
Cdd:PRK07764  394 PAAAAPSAAAAAPAAAPA-PAAAAPAAAAAPAPAAAPQPApAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAA 472

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1767294013 306 SVPPTPKSAvpSEAPPTPRSAAPSDVPPTPKSNGH 340
Cdd:PRK07764  473 APEPTAAPA--PAPPAAPAPAAAPAAPAAPAAPAG 505
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 229-335 4.99e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 4.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 229 ADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPtpksAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVP 308
Cdd:PRK07764  390 GAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPA----PAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ 465

                          90       100
                  ....*....|....*....|....*..
gi 1767294013 309 PTPKSAVPSEAPPTPRSAAPSDVPPTP 335
Cdd:PRK07764  466 PAPAPAAAPEPTAAPAPAPPAAPAPAA 492
PRK10856 PRK10856
cytoskeleton protein RodZ;
234-330 5.06e-05

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 46.17  E-value: 5.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 234 AAELEADAGSEVPPTPKTAASEKQ---SVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPT 310
Cdd:PRK10856  151 SAELSQNSGQSVPLDTSTTTDPATtpaPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPAT 230

                          90       100
                  ....*....|....*....|
gi 1767294013 311 PKSAVPSEAPPTPRSAAPSD 330
Cdd:PRK10856  231 PDGAAPLPTDQAGVSTPAAD 250
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 228-354 5.28e-05

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 46.84  E-value: 5.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 228 TADEEPAAELEADAGSEVPPTPKTAASEKqsvpptPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSevPLTPKSAAQSSV 307
Cdd:PLN03209  310 TAPLTPMEELLAKIPSQRVPPKESDAADG------PKPVPTKPVTPEAPSPPIEEEPPQPKAVVPR--PLSPYTAYEDLK 381

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1767294013 308 PPTPksavPSEAPPTPRSAAPSDVPPTPKSNGHIANGSIPGTPSVAQ 354
Cdd:PLN03209  382 PPTS----PIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPE 424
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 227-331 5.81e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 5.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 227 PTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSS 306
Cdd:PRK07764  406 PAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPP 485

                          90       100
                  ....*....|....*....|....*
gi 1767294013 307 VPPTPKSAVPSEAPPTPrSAAPSDV 331
Cdd:PRK07764  486 AAPAPAAAPAAPAAPAA-PAGADDA 509
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 210-323 7.17e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 46.25  E-value: 7.17e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 210 QAPPEGKRPRTPndldnPTADEEPAAeleADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKS 289
Cdd:PRK14951  385 EAAAPAAAPVAQ-----AAAAPAPAA---APAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAA 456

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1767294013 290 AAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTP 323
Cdd:PRK14951  457 PETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490
PRK11633 PRK11633
cell division protein DedD; Provisional
 227-328 1.20e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 44.22  E-value: 1.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 227 PTADEEPAAELEADAGSEVPPTP-KTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPlTPKSAAQS 305
Cdd:PRK11633   45 PKPGDRDEPDMMPAATQALPTQPpEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKP-KPKPKPQQ 123

                          90       100
                  ....*....|....*....|...
gi 1767294013 306 SVPPTPKSAvPSEAPPTPRSAAP 328
Cdd:PRK11633  124 KVEAPPAPK-PEPKPVVEEKAAP 145
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 233-338 1.62e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 45.10  E-value: 1.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 233 PAAELEADAGSEVP---PTPKTAASEKQSVPPTPKSAAPSEVPP--TPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSV 307
Cdd:PHA03269   27 PIPELHTSAATQKPdpaPAPHQAASRAPDPAVAPTSAASRKPDLaqAPTPAASEKFDPAPAPHQAASRAPDPAVAPQLAA 106

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1767294013 308 PPTPKSAVPSEAPPTpRSAAPSDVP-------PTPKSN 338
Cdd:PHA03269  107 APKPDAAEAFTSAAQ-AHEAPADAGtsaaskkPDPAAH 143
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 212-337 1.83e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 44.92  E-value: 1.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 212 PPEGKRPRtPNDLDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPsEVPPTPKSAA 291
Cdd:PLN03209  390 PPSSSPAS-SKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTA-PTGVSPSVSS 467

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1767294013 292 PSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKS 337
Cdd:PLN03209  468 TSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPS 513
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 229-343 2.57e-04

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 44.69  E-value: 2.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 229 ADEE-----PAAELEADA---GSEVPPTPKTAASEKQSVPPTPK-SAAPSEVPPTPKSAAPSEVPPT-PKSAAPSEVPLT 298
Cdd:PLN02217  531 SDEEilkftPAQYIQGDAwipGKGVPYIPGLFAGNPGSTNSTPTgSAASSNTTFSSDSPSTVVAPSTsPPAGHLGSPPAT 610

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1767294013 299 P-KSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPT--PKSNGHIAN 343
Cdd:PLN02217  611 PsKIVSPSTSPPASHLGSPSTTPSSPESSIKVASTETasPESSIKVAS 658
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
227-391 2.59e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.48  E-value: 2.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 227 PTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSA-APSEVPPTP---------KSAAPSEVPPTPKSAAPSEVP 296
Cdd:PRK12323  381 PVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAaAPARRSPAPealaaarqaSARGPGGAPAPAPAPAAAPAA 460

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 297 LTPKSAAQSSVPPTPKSAVPS-EAPPTPRSAAPSDVPPTPKSNGHIAngSIPGTPSVAQERVEPEPEPVAEEPEPVAEPE 375
Cdd:PRK12323  461 AARPAAAGPRPVAAAAAAAPArAAPAAAPAPADDDPPPWEELPPEFA--SPAPAQPDAAPAGWVAESIPDPATADPDDAF 538

                         170
                  ....*....|....*.
gi 1767294013 376 PEPEPVAEAEPEAEPA 391
Cdd:PRK12323  539 ETLAPAPAAAPAPRAA 554
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
262-337 2.79e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 43.85  E-value: 2.79e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1767294013 262 TPKSAAPSEVPPTPKSAAPSEVPPTPKsaapsevPLTPKSAAQSSVPPTPKSAVPSEAP-PTPRSAAPSDVPPTPKS 337
Cdd:PRK13042   23 TTTQAANATTPSSTKVEAPQSTPPSTK-------VEAPQSKPNATTPPSTKVEAPQQTPnATTPSSTKVETPQSPTT 92
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 266-347 3.55e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 44.03  E-value: 3.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 266 AAPSEVPPTPKSAAPSEVPPTPksaAPSEvplTPKSAAQSSVPPT-PKSAVPSEAPPTPRSAAPSdVPPTPKSNGHIANG 344
Cdd:PRK14950  362 PVPAPQPAKPTAAAPSPVRPTP---APST---RPKAAAAANIPPKePVRETATPPPVPPRPVAPP-VPHTPESAPKLTRA 434


                  ...
gi 1767294013 345 SIP 347
Cdd:PRK14950  435 AIP 437
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 210-362 3.63e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.21  E-value: 3.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 210 QAPPEGKRPRTPNDLDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKS 289
Cdd:PRK07764  631 GAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPP 710

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1767294013 290 AAPSEVPLT-PKSAAQSSVPPTPKSAVPSEAPPTPRSA-APSDVPPTPKSNGHIANgsiPGTPSVAQERVEPEPE 362
Cdd:PRK07764  711 AGQADDPAAqPPQAAQGASAPSPAADDPVPLPPEPDDPpDPAGAPAQPPPPPAPAP---AAAPAAAPPPSPPSEE 782
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
233-335 4.14e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.00  E-value: 4.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 233 PAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTpk 312
Cdd:PRK14971  363 TQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPP-- 440

                          90       100
                  ....*....|....*....|...
gi 1767294013 313 SAVPSEAPPTPrsaAPSDVPPTP 335
Cdd:PRK14971  441 STAPQAVRPAQ---FKEEKKIPV 460
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
226-335 4.83e-04

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 43.19  E-value: 4.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 226 NPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPltpksaaQS 305
Cdd:PRK13335   53 NITAGANSATTQAANTRQERTPKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTT-------ES 125

                          90       100       110
                  ....*....|....*....|....*....|
gi 1767294013 306 SVPPTPKSAVPSEAPPTPRSAAPSDVPPTP 335
Cdd:PRK13335  126 TTPKTKVTTPPSTNTPQPMQSTKSDTPQSP 155
PRK10856 PRK10856
cytoskeleton protein RodZ;
220-307 5.10e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 43.09  E-value: 5.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 220 TPNDLDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPsevPLTP 299
Cdd:PRK10856  171 DPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAG---VSTP 247


                  ....*...
gi 1767294013 300 KSAAQSSV 307
Cdd:PRK10856  248 AADPNALV 255
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 229-320 5.29e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 43.73  E-value: 5.29e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013  229 ADEEPAAeleADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPP--TPKSAAPSEVPPTPKSAAPSevpltPKSAAQSS 306
Cdd:PRK12270    34 ADYGPGS---TAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPaaAAPAAPPKPAAAAAAAAAPA-----APPAAAAA 105

                           90
                   ....*....|....
gi 1767294013  307 VPPTPKSAVPSEAP 320
Cdd:PRK12270   106 AAPAAAAVEDEVTP 119
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 239-354 5.91e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.44  E-value: 5.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 239 ADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVP---PTPKSAV 315
Cdd:PRK07764  389 GGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPaaaPSAQPAP 468

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1767294013 316 PSEAPPTPRSAAPSDVPPTPKSNGHIANGSIPGTPSVAQ 354
Cdd:PRK07764  469 APAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGAD 507
PRK11633 PRK11633
cell division protein DedD; Provisional
 227-322 6.95e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 41.91  E-value: 6.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 227 PTADEEPAAElEADAGSEVPPT--PKTAASEKQSVPPTPKSAAPSEVPPTPKsaapseVPPTPKSAAPSEVPLTPKsaaq 304
Cdd:PRK11633   64 PTQPPEGAAE-AVRAGDAAAPSldPATVAPPNTPVEPEPAPVEPPKPKPVEK------PKPKPKPQQKVEAPPAPK---- 132

                          90
                  ....*....|....*...
gi 1767294013 305 ssvpPTPKSAVPSEAPPT 322
Cdd:PRK11633  133 ----PEPKPVVEEKAAPT 146
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 226-308 7.49e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 43.34  E-value: 7.49e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013  226 NPTADEEPAAELEADAGSEVPPTPKTAASEKQ-SVPPTPKSAAPSeVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQ 304
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAaPAPAPPAAAAPA-APPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115


                   ....
gi 1767294013  305 SSVP 308
Cdd:PRK12270   116 EVTP 119
flhF PRK06995
flagellar biosynthesis protein FlhF;
252-336 8.43e-04

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 42.65  E-value: 8.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 252 AASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDV 331
Cdd:PRK06995   44 ADSDLAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERA 123


                  ....*
gi 1767294013 332 PPTPK 336
Cdd:PRK06995  124 AAENA 128
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
237-321 9.70e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 42.64  E-value: 9.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 237 LEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVP 316
Cdd:PRK14948  510 LESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPT 589


                  ....*
gi 1767294013 317 SEAPP 321
Cdd:PRK14948  590 KDSSP 594
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 268-356 1.14e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 42.57  E-value: 1.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013  268 PSEVPPT----------PKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAP-PTPRSAAPSDVPPTPK 336
Cdd:PRK12270    22 PNSVDPSwreffadygpGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPkPAAAAAAAAAPAAPPA 101

                           90       100
                   ....*....|....*....|
gi 1767294013  337 SNGHIANGSIPGTPSVAQER 356
Cdd:PRK12270   102 AAAAAAPAAAAVEDEVTPLR 121
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 221-334 1.23e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 42.25  E-value: 1.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 221 PNDLDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVP-PTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSeVPLTP 299
Cdd:pfam17823 323 PTPSPSNTTLEPNTPKSVASTNLAVVTTTKAQAKEPSASPvPVLHTSMIPEVEATSPTTQPSPLLPTQGAAGPG-ILLAP 401

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1767294013 300 KSAAQSSVPPTpksavpSEAPPTPRSAAPSDVPPT 334
Cdd:pfam17823 402 EQVATEATAGT------ASAGPTPRSSGDPKTLAM 430
PHA02030 PHA02030
hypothetical protein
 237-336 1.40e-03

hypothetical protein


Pssm-ID: 222843 [Multi-domain]  Cd Length: 336  Bit Score: 41.89  E-value: 1.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 237 LEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPksAAPSEVPPtpksAAPSeVPLTPKSAAQSSVPPTPKSAVP 316
Cdd:PHA02030  247 LGGGEDLIIKPKSKAAGSNLPAVPNVAADAGSAAAPAVP--AAAAAVAQ----AAPS-VPQVPNVAVLPDVPQVAPVAAP 319

                          90       100
                  ....*....|....*....|
gi 1767294013 317 SeAPPTPrsAAPSdVPPTPK 336
Cdd:PHA02030  320 A-APEVP--AVPV-VPAAPQ 335
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 229-335 1.62e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 41.47  E-value: 1.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 229 ADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAApseVPPTPKSAAPSEVPLTPKSA----AQ 304
Cdd:PTZ00436  239 AAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAA---APPAKAAAAPAKAAAAPAKAaaapAK 315

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1767294013 305 SSVPPTPKSAVPSEA--PPTPRSAAPSDVPPTP 335
Cdd:PTZ00436  316 AAAPPAKAAAPPAKAatPPAKAAAPPAKAAAAP 348
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 243-317 1.73e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 41.85  E-value: 1.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 243 SEVPPTPKTAASEKQSVPPTPKSAAPSEVPPT--------PKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSA 314
Cdd:PRK14954  378 GGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAkpeapgarPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASG 457


                  ...
gi 1767294013 315 VPS 317
Cdd:PRK14954  458 KPG 460
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
241-321 1.76e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 41.16  E-value: 1.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 241 AGSEVPPTPKTAAseKQSVPPT-----PKSAAPSEVPPTPKSAAPSevpPTPKSAAPSEVPL-TPKSaaqssvpPTPKSa 314
Cdd:PRK13042   28 ANATTPSSTKVEA--PQSTPPStkveaPQSKPNATTPPSTKVEAPQ---QTPNATTPSSTKVeTPQS-------PTTKQ- 94


                  ....*..
gi 1767294013 315 VPSEAPP 321
Cdd:PRK13042   95 VPTEINP 101
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 262-353 1.78e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 41.72  E-value: 1.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 262 TPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAaQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPksnghi 341
Cdd:PRK14950  344 TSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPA-PSTRPKAAAAANIPPKEPVRETATPPPVPPRP------ 416

                          90
                  ....*....|..
gi 1767294013 342 ANGSIPGTPSVA 353
Cdd:PRK14950  417 VAPPVPHTPESA 428
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 212-338 1.97e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 41.29  E-value: 1.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 212 PPEGKRPRTPNDLDnPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPksAAPSEVPPTPKSAA 291
Cdd:NF040712  200 ATVPRLAREPADAR-PEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGP--GAAPAAEPDEATRD 276

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1767294013 292 PSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKSN 338
Cdd:NF040712  277 AGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPK 323
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 233-351 2.13e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 41.59  E-value: 2.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 233 PAAELEADAGSEVPPT----PKTAASEKQSVPPT----PKSAAPSEvPPTPKSAAPSEVPPtpkSAAPS------EVPLT 298
Cdd:PRK14959  367 PVESLRPSGGGASAPSgsaaEGPASGGAATIPTPgtqgPQGTAPAA-GMTPSSAAPATPAP---SAAPSprvpwdDAPPA 442

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1767294013 299 PksaAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKSNGHiANGSIPGTPS 351
Cdd:PRK14959  443 P---PRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGD-PSDTAEHTPS 491
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 207-321 2.19e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 41.14  E-value: 2.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 207 FELQAPPEGKRPRTPNDlDNPTADEEPAAELEADAGSEVPPTPKTAAsekqsvPPTPKSAAPSEVPPTPKSAAPSEVPPT 286
Cdd:PHA03264  264 YEPPPAPSGGSPAPPGD-DRPEAKPEPGPVEDGAPGRETGGEGEGPE------PAGRDGAAGGEPKPGPPRPAPDADRPE 336

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1767294013 287 PksaapsevplTPKSAAQSSVPPTPKSAVPSEAPP 321
Cdd:PHA03264  337 G----------WPSLEAITFPPPTPATPAVPRARP 361
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 228-299 2.35e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 2.35e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1767294013 228 TADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPK--SAAPSEVPPTPKSAAPSEVPPTPKSAA-PSE--VPLTP 299
Cdd:PTZ00144  120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAasKPTPPAAAKPPEPAPAAKPPPTPVARAdPREtrVPMSR 196
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 227-336 2.42e-03

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 40.61  E-value: 2.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 227 PTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAA--PSEVPLTPKSAAQ 304
Cdd:PHA02682   43 PDADVDPLDKYSVKEAGRYYQSRLKANSACMQRPSGQSPLAPSPACAAPAPACPACAPAAPAPAVtcPAPAPACPPATAP 122

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1767294013 305 SSVPPT--PKSAVPSEA-PPTPRSAAPSDVPPTPK 336
Cdd:PHA02682  123 TCPPPAvcPAPARPAPAcPPSTRQCPPAPPLPTPK 157
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 212-373 2.71e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 41.21  E-value: 2.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 212 PPEGKRPRTPNDLDNPTADEEPAAeleadagsevPPTPKTAasekqSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAA 291
Cdd:PTZ00449  573 PTLSKKPEFPKDPKHPKDPEEPKK----------PKRPRSA-----QRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPP 637

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 292 PSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTP---------------RSAAPSDVPPTPKSNGHIANGSIPGTPSVAQER 356
Cdd:PTZ00449  638 PPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPkfkekfyddyldaaaKSKETKTTVVLDESFESILKETLPETPGTPFTT 717

                         170
                  ....*....|....*..
gi 1767294013 357 VEPEPEPVAEEPEPVAE 373
Cdd:PTZ00449  718 PRPLPPKLPRDEEFPFE 734
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
254-338 2.78e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 41.10  E-value: 2.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 254 SEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSsvPPTPKSAVPSEAPPTPRSAAPsdvPP 333
Cdd:PRK14948  361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKAS--PPIPVPAEPTEPSPTPPANAA---NA 435


                  ....*
gi 1767294013 334 TPKSN 338
Cdd:PRK14948  436 PPSLN 440
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
258-346 2.83e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 41.10  E-value: 2.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 258 SVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKS 337
Cdd:PRK14948  516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSPE 595

                          90
                  ....*....|....*..
gi 1767294013 338 NGHIA--------NGSI 346
Cdd:PRK14948  596 EIDKAaknladffNGEI 612
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 259-350 2.89e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 40.76  E-value: 2.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 259 VPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQ--SSVPPTPKSAVPSEAP---PTPRSAAPSdvPP 333
Cdd:PHA03264  254 VPPYFEESKGYEPPPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRetGGEGEGPEPAGRDGAAggePKPGPPRPA--PD 331

                          90
                  ....*....|....*..
gi 1767294013 334 TPKSNGHIANGSIPGTP 350
Cdd:PHA03264  332 ADRPEGWPSLEAITFPP 348
Rib_recp_KP_reg pfam05104
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ...
 233-322 2.92e-03

Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.


Pssm-ID: 461548 [Multi-domain]  Cd Length: 140  Bit Score: 38.95  E-value: 2.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 233 PAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAaPSEVPPTPKSAAPSEVP-PTPKSAAPSEVPLTPKSAAQSSVPPTP 311
Cdd:pfam05104  51 PESEQADESEEEPREFKTPDEAPSAALEPEPVPT-PVPAPVEPEPAPPSESPaPSPKEKKKKEKKSAKVEPAETPEAVQP 129

                          90
                  ....*....|.
gi 1767294013 312 KSAVPSEAPPT 322
Cdd:pfam05104 130 KPALEKEEPPA 140
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 204-344 3.00e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 41.15  E-value: 3.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 204 KQEFELqAPPEGKRPRTPNDLDNPTADEEpAAELEADAGSEVPPTPKTAASE-KQSVPPTPKSAAPSEVPPTPkSAAPSE 282
Cdd:NF033838  352 EAELEL-VKEEAKEPRNEEKIKQAKAKVE-SKKAEATRLEKIKTDRKKAEEEaKRKAAEEDKVKEKPAEQPQP-APAPQP 428

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1767294013 283 VPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSA------VPSEAPPTPRSAAPsdvPPTPKSNGHIANG 344
Cdd:NF033838  429 EKPAPKPEKPAEQPKAEKPADQQAEEDYARRSeeeynrLTQQQPPKTEKPAQ---PSTPKTGWKQENG 493
PHA03369 PHA03369
capsid maturational protease; Provisional
 241-332 3.01e-03

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 41.14  E-value: 3.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 241 AGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAP 320
Cdd:PHA03369  356 PSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQSPGTSYGPEPVGP 435

                          90
                  ....*....|..
gi 1767294013 321 PTPRSAAPSDVP 332
Cdd:PHA03369  436 VPPQPTNPYVMP 447
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
251-336 3.56e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.39  E-value: 3.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 251 TAASEKQSVPPTPKSAAPSEVPPTPKSAAPSevpPTPKSAAPSEVPL-TPKSAAQSSVPPTPKSAVPsEAPPTPRsaAPS 329
Cdd:PRK13042   24 TTQAANATTPSSTKVEAPQSTPPSTKVEAPQ---SKPNATTPPSTKVeAPQQTPNATTPSSTKVETP-QSPTTKQ--VPT 97


                  ....*..
gi 1767294013 330 DVPPTPK 336
Cdd:PRK13042   98 EINPKFK 104
PRK10856 PRK10856
cytoskeleton protein RodZ;
220-315 3.69e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 40.39  E-value: 3.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 220 TPNDLDNPTADEEPAAELEADAgseVPPTPKTAASEKQSVPPTPKSAA--PSEVPPTPKSAAPSEVPPTPKSAAPSEVPL 297
Cdd:PRK10856  160 QSVPLDTSTTTDPATTPAPAAP---VDTTPTNSQTPAVATAPAPAVDPqqNAVVAPSQANVDTAATPAPAAPATPDGAAP 236

                          90
                  ....*....|....*...
gi 1767294013 298 TPKSAAQSSVPPTPKSAV 315
Cdd:PRK10856  237 LPTDQAGVSTPAADPNAL 254
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
218-330 4.10e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 40.56  E-value: 4.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 218 PRTPNDLDNPTADEEPAAELEADaGSEVPPTP---KTAASEKQSVPPTPKSAAPsEVPPTPKSAAPSEVPPTPKSAAPSE 294
Cdd:PRK12373  202 GKARYNASKALAEDIGDTVKRID-GTEVPLLApwqGDAAPVPPSEAARPKSADA-ETNAALKTPATAPKAAAKNAKAPEA 279

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1767294013 295 VPLTPKSAAQSSVPPTPKSAVPSEAPP---------TPRSAAPSD 330
Cdd:PRK12373  280 QPVSGTAAAEPAPKEAAKAAAAAAKPAledkprplgIARPGGADD 324
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 249-330 4.91e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 40.26  E-value: 4.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 249 PKTAASEKQSVPPTPKSAapsevpPTPKSAAPseVPPTPKSAAPsevpltPKSAAQSSVPPTPKSAVPSEAPPTPRSAAP 328
Cdd:TIGR00601  77 PKTGTGKVAPPAATPTSA------PTPTPSPP--ASPASGMSAA------PASAVEEKSPSEESATATAPESPSTSVPSS 142


                  ..
gi 1767294013 329 SD 330
Cdd:TIGR00601 143 GS 144
FAP pfam07174
Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment ...
 237-332 4.93e-03

Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix.


Pssm-ID: 429334  Cd Length: 301  Bit Score: 39.91  E-value: 4.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 237 LEADAGSEVPPTPktaasekqsVPPTPKSAAPSEVPPTPKSAAPseVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVP 316
Cdd:pfam07174  33 LPAVAHADPEPAP---------PPPSTATAPPAPPPPPPAPAAP--APPPPPAAPNAPNAPPPPADPNAPPPPPADPNAP 101

                          90
                  ....*....|....*.
gi 1767294013 317 SEAPPTPRSAAPSDVP 332
Cdd:pfam07174 102 PPPAVDPNAPEPGRID 117
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
266-337 6.03e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 40.37  E-value: 6.03e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1767294013 266 AAPSEVPPTPKSAAPsEVPPTPKSAAPSEVPlTPKSAAQSSVPPTPKSAVPsEAPPTPRSAAPSDVPPTPKS 337
Cdd:COG5373    38 AEAAEAASAPAEPEP-EAAAAATAAAPEAAP-APVPEAPAAPPAAAEAPAP-AAAAPPAEAEPAAAPAAASS 106
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 227-336 6.28e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 40.23  E-value: 6.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 227 PTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSA----------APSEVPPTPKSAAPSEVPPTPKSAAPSevP 296
Cdd:PRK07994  381 AQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSqllaarqqlqRAQGATKAKKSEPAAASRARPVNSALE--R 458

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1767294013 297 LTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPK 336
Cdd:PRK07994  459 LASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPK 498
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 251-363 6.39e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 40.23  E-value: 6.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 251 TAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSD 330
Cdd:PRK07994  367 EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAA 446

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1767294013 331 VPPTPksnghiANGSIPGTPSVAQERVEPEPEP 363
Cdd:PRK07994  447 SRARP------VNSALERLASVRPAPSALEKAP 473
PHA03247 PHA03247
large tegument protein UL36; Provisional
 91-344 8.70e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 8.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013   91 LPANDEAQVEESAPADEPAPeeekpqeeapaeepapaeeaPQEEVPAEEPVAEETAPAEEAAVEEPVVEEAAPVEEAPEA 170
Cdd:PHA03247  2750 TPGGPARPARPPTTAGPPAP--------------------APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPA 2809

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013  171 EETAPAEEPLIEVAVEEAPAEEPVAEEAEPEAEKQEFELQAPPEG---------KRPRTPNDLDNPTADEEPAAELEADA 241
Cdd:PHA03247  2810 AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGsvapggdvrRRPPSRSPAAKPAAPARPPVRRLARP 2889

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013  242 GSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQ---SSVPPTP------- 311
Cdd:PHA03247  2890 AVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAgepSGAVPQPwlgalvp 2969

                          250       260       270
                   ....*....|....*....|....*....|....
gi 1767294013  312 -KSAVPSEAPPTPRSAAPSDVPPTPKSNGHIANG 344
Cdd:PHA03247  2970 gRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSR 3003
PLN02983 PLN02983
biotin carboxyl carrier protein of acetyl-CoA carboxylase
 244-309 8.85e-03

biotin carboxyl carrier protein of acetyl-CoA carboxylase


Pssm-ID: 215533 [Multi-domain]  Cd Length: 274  Bit Score: 39.05  E-value: 8.85e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1767294013 244 EVPPTPKTAASEKQSVPPTPKSAAPseVPPTPKSAAPSEVPPTPKSAAPSEvplTPKSAAQSSVPP 309
Cdd:PLN02983  139 EALPQPPPPAPVVMMQPPPPHAMPP--ASPPAAQPAPSAPASSPPPTPASP---PPAKAPKSSHPP 199
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 229-299 9.56e-03

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 39.32  E-value: 9.56e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1767294013 229 ADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAApsevpPTPKSAAPSEVPPTPKSAAPSEVPLTP 299
Cdd:PRK06975  254 GDERIVRAFLTWADAAAQPATAAPAPSRMTDTNDSKSVT-----SQPAAAAAAPAPPPNPPATPPEPPARR 319
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 211-336 9.76e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 39.77  E-value: 9.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013  211 APPEGKRPRTPNDLDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSA 290
Cdd:PHA03307   779 EPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKP 858

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1767294013  291 APSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPK 336
Cdd:PHA03307   859 AAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPR 904
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
227-405 9.90e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.45  E-value: 9.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 227 PTADEEPAAELEADAGSEVP---PTPKTAASEKQSVPPTPKSAAPSEvPPTPKSAAPseVPPTPKSAAPSEVPLTPKSAA 303
Cdd:PRK07003  362 VTGGGAPGGGVPARVAGAVPapgARAAAAVGASAVPAVTAVTGAAGA-ALAPKAAAA--AAATRAEAPPAAPAPPATADR 438

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767294013 304 QSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKSNGHIANGSIPGTPSVAQERVEPEPEPVAEEPEPVAEPEPEPEPVAE 383
Cdd:PRK07003  439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASR 518

                         170       180
                  ....*....|....*....|..
gi 1767294013 384 AEPEAEPAVEEEPAEEPEPAAD 405
Cdd:PRK07003  519 EDAPAAAAPPAPEARPPTPAAA 540
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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