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Conserved domains on  [gi|1757649838|ref|NP_001361547|]
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zinc finger protein 143 isoform 1 [Mus musculus]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 11472214)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0008270|GO:0003677
PubMed:  11361095|22803940
SCOP:  4003583

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
251-424 9.29e-14

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 73.96  E-value: 9.29e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 251 AHHLKVHERSHTGdRPYQCEHSGCGKAFATGYGLKSHFRT--HTGE--KPYRCSEDNCTKSFKTSGDLQKHIRTHTGERP 326
Cdd:COG5048   273 SSPNESDSSSEKG-FSLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCPYSLCGKLFSRNDALKRHILLHTSISP 351

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 327 FKCPIEGCGRSFTTSNIRK-----VHIRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEY 401
Cdd:COG5048   352 AKEKLLNSSSKFSPLLNNEppqslQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRH 431

                         170       180
                  ....*....|....*....|...
gi 1757649838 402 SSLYKHHVVHTHSKPYNCNHCGK 424
Cdd:COG5048   432 YNLIPHKKIHTNHAPLLCSILKS 454
SFP1 super family cl25788
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 207-292 1.03e-04

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


The actual alignment was detected with superfamily member COG5189:

Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 45.09  E-value: 1.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 207 ENEQEKKMQIVLQGHATRVTPKSQQ--SGEKAFRCKYDGCGKLYTTAHHLKVH---------------ERSHTG----DR 265
Cdd:COG5189   318 CTNSSSNGKLAHGGERNIDTPSRMLkvKDGKPYKCPVEGCNKKYKNQNGLKYHmlhghqnqklhenpsPEKMNIfsakDK 397

                          90       100
                  ....*....|....*....|....*..
gi 1757649838 266 PYQCEHsgCGKAFATGYGLKSHfRTHT 292
Cdd:COG5189   398 PYRCEV--CDKRYKNLNGLKYH-RKHS 421
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
251-424 9.29e-14

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 73.96  E-value: 9.29e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 251 AHHLKVHERSHTGdRPYQCEHSGCGKAFATGYGLKSHFRT--HTGE--KPYRCSEDNCTKSFKTSGDLQKHIRTHTGERP 326
Cdd:COG5048   273 SSPNESDSSSEKG-FSLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCPYSLCGKLFSRNDALKRHILLHTSISP 351

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 327 FKCPIEGCGRSFTTSNIRK-----VHIRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEY 401
Cdd:COG5048   352 AKEKLLNSSSKFSPLLNNEppqslQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRH 431

                         170       180
                  ....*....|....*....|...
gi 1757649838 402 SSLYKHHVVHTHSKPYNCNHCGK 424
Cdd:COG5048   432 YNLIPHKKIHTNHAPLLCSILKS 454
zf-H2C2_2 pfam13465
Zinc-finger double domain;
284-310 2.36e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 41.59  E-value: 2.36e-05
                          10        20
                  ....*....|....*....|....*..
gi 1757649838 284 LKSHFRTHTGEKPYRCSEdnCTKSFKT 310
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPE--CGKSFKS 26
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 207-292 1.03e-04

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 45.09  E-value: 1.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 207 ENEQEKKMQIVLQGHATRVTPKSQQ--SGEKAFRCKYDGCGKLYTTAHHLKVH---------------ERSHTG----DR 265
Cdd:COG5189   318 CTNSSSNGKLAHGGERNIDTPSRMLkvKDGKPYKCPVEGCNKKYKNQNGLKYHmlhghqnqklhenpsPEKMNIfsakDK 397

                          90       100
                  ....*....|....*....|....*..
gi 1757649838 266 PYQCEHsgCGKAFATGYGLKSHfRTHT 292
Cdd:COG5189   398 PYRCEV--CDKRYKNLNGLKYH-RKHS 421
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
251-424 9.29e-14

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 73.96  E-value: 9.29e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 251 AHHLKVHERSHTGdRPYQCEHSGCGKAFATGYGLKSHFRT--HTGE--KPYRCSEDNCTKSFKTSGDLQKHIRTHTGERP 326
Cdd:COG5048   273 SSPNESDSSSEKG-FSLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCPYSLCGKLFSRNDALKRHILLHTSISP 351

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 327 FKCPIEGCGRSFTTSNIRK-----VHIRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEY 401
Cdd:COG5048   352 AKEKLLNSSSKFSPLLNNEppqslQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRH 431

                         170       180
                  ....*....|....*....|...
gi 1757649838 402 SSLYKHHVVHTHSKPYNCNHCGK 424
Cdd:COG5048   432 YNLIPHKKIHTNHAPLLCSILKS 454
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
355-430 1.44e-08

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 57.40  E-value: 1.44e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1757649838 355 RPYYCtePGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSKPYNCNHCGKTYKQIS 430
Cdd:COG5048    32 RPDSC--PNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDLNSKSLPLSNSKA 105
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 383-440 8.08e-08

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 55.11  E-value: 8.08e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1757649838 383 GEKPYVCTVPGCDKRFTEYSSLyKHHVVHTH--------------------SKPYNCNHCGKTYKQISTLAMHKRTAH 440
Cdd:COG5189   346 DGKPYKCPVEGCNKKYKNQNGL-KYHMLHGHqnqklhenpspekmnifsakDKPYRCEVCDKRYKNLNGLKYHRKHSH 422
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 249-413 8.59e-08

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 55.11  E-value: 8.59e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 249 TTAHHLKVHERSHTGDrpYQCEHSGCGKA-----FATGYGLKSHFRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIrthtG 323
Cdd:COG5189   273 SQGSAELFEESSLGFD--YEFIHKSVGNKeirggISTGEMIDVRKLPCTNSSSNGKLAHGGERNIDTPSRMLKVK----D 346

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 324 ERPFKCPIEGCGRSFTTSNIRKVH-IRTHTGERPYYCTEPGCGRAFASAtnyknhvrihtgEKPYVCTVpgCDKRFTEYS 402
Cdd:COG5189   347 GKPYKCPVEGCNKKYKNQNGLKYHmLHGHQNQKLHENPSPEKMNIFSAK------------DKPYRCEV--CDKRYKNLN 412

                         170
                  ....*....|.
gi 1757649838 403 SLyKHHVVHTH 413
Cdd:COG5189   413 GL-KYHRKHSH 422
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
264-342 1.19e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 51.24  E-value: 1.19e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1757649838 264 DRPYQCEhsGCGKAFATGYGLKSHFRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPIEGCGRSFTTSN 342
Cdd:COG5048    31 PRPDSCP--NCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDLNSKSLPLSNSKASS 107
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
232-408 8.81e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 48.54  E-value: 8.81e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 232 SGEKAFRCKYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHSGCGKafatgyglkshfrTHTGEKPYrcsednctksfKTS 311
Cdd:COG5048   317 ESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSS-------------KFSPLLNN-----------EPP 372

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 312 GDLQKHIRTHTgERPFKCPIEGCGRSFTTSNIRKVHIRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCtv 391
Cdd:COG5048   373 QSLQQYKDLKN-DKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLC-- 449

                         170
                  ....*....|....*..
gi 1757649838 392 pgCDKRFTEYSSLYKHH 408
Cdd:COG5048   450 --SILKSFRRDLDLSNH 464
zf-H2C2_2 pfam13465
Zinc-finger double domain;
284-310 2.36e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 41.59  E-value: 2.36e-05
                          10        20
                  ....*....|....*....|....*..
gi 1757649838 284 LKSHFRTHTGEKPYRCSEdnCTKSFKT 310
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPE--CGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
313-340 2.55e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 41.20  E-value: 2.55e-05
                          10        20
                  ....*....|....*....|....*...
gi 1757649838 313 DLQKHIRTHTGERPFKCPIegCGRSFTT 340
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPE--CGKSFKS 26
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
359-442 2.58e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 47.00  E-value: 2.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 359 CTEPGCGRAFASATNYKNHVR--IHTGE--KPYVCTVPGCDKRFTEYSSLYKHHVVHTHSKPYNC--NHCGKTYKQIST- 431
Cdd:COG5048   290 IKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEklLNSSSKFSPLLNn 369

                          90
                  ....*....|....*
gi 1757649838 432 ----LAMHKRTAHND 442
Cdd:COG5048   370 eppqSLQQYKDLKND 384
zf-C2H2_8 pfam15909
C2H2-type zinc ribbon; This family carries three zinc-fingers in tandem.
 269-356 5.58e-05

C2H2-type zinc ribbon; This family carries three zinc-fingers in tandem.


Pssm-ID: 464935 [Multi-domain]  Cd Length: 98  Bit Score: 42.41  E-value: 5.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 269 CEHSGCGKAFATGYGLKSHFRTHTGE------KPYRCSEDNCTKSFKTSGDLQKHIRTH-TGERPFKCpiEGCGRSFTT- 340
Cdd:pfam15909   2 CSSPGCCLSFPSVRDLAQHLRTHCPPtqslegKLFRCSALSCTETFPSMQELVAHSKLHyKPNRYFKC--ENCLLRFRTh 79

                          90
                  ....*....|....*..
gi 1757649838 341 -SNIRKVHIRTHTGERP 356
Cdd:pfam15909  80 rSLFKHLHVCAEHAQSP 96
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 207-292 1.03e-04

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 45.09  E-value: 1.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 207 ENEQEKKMQIVLQGHATRVTPKSQQ--SGEKAFRCKYDGCGKLYTTAHHLKVH---------------ERSHTG----DR 265
Cdd:COG5189   318 CTNSSSNGKLAHGGERNIDTPSRMLkvKDGKPYKCPVEGCNKKYKNQNGLKYHmlhghqnqklhenpsPEKMNIfsakDK 397

                          90       100
                  ....*....|....*....|....*..
gi 1757649838 266 PYQCEHsgCGKAFATGYGLKSHfRTHT 292
Cdd:COG5189   398 PYRCEV--CDKRYKNLNGLKYH-RKHS 421
zf-H2C2_2 pfam13465
Zinc-finger double domain;
253-280 1.10e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 39.66  E-value: 1.10e-04
                          10        20
                  ....*....|....*....|....*...
gi 1757649838 253 HLKVHERSHTGDRPYQCEHsgCGKAFAT 280
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPE--CGKSFKS 26
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
228-348 1.39e-04

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 44.69  E-value: 1.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 228 KSQQSGEKAFRCKYDGCGKLY----TTAHHLKVHERSH-TGDRPYQCEHSGCGKAFATGYGLKSHFRTHTGEKPYRCSED 302
Cdd:COG5048   343 ILLHTSISPAKEKLLNSSSKFspllNNEPPQSLQQYKDlKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNP 422

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1757649838 303 NCTKSFKTSGDLQKHIRTHTGERPFKCpiEGCGRSFTTSNIRKVHI 348
Cdd:COG5048   423 PCSKSFNRHYNLIPHKKIHTNHAPLLC--SILKSFRRDLDLSNHGK 466
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
221-437 1.43e-04

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 44.69  E-value: 1.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 221 HATRVTPKS-QQSGEKAFRC-KYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHSGCGKAFATGYGLKSHFRTHTGEKPYR 298
Cdd:COG5048    14 SVLSSTPKStLKSLSNAPRPdSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDL 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 299 CSEDNCTKSFKTSGDlQKHIRTHTGERPFKCPIEGCGRSFTTSNIRKVHIRTHTGErpyyCTEPGCGRAFASATNYKNHV 378
Cdd:COG5048    94 NSKSLPLSNSKASSS-SLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRN----NPLPGNNSSSVNTPQSNSLH 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1757649838 379 RIHTGEkpyvctvPGCDKRFTEYSSLYKHHVVHTHSKPYNCNHCGKTYKQISTLAMHKR 437
Cdd:COG5048   169 PPLPAN-------SLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNL 220
zf-H2C2_2 pfam13465
Zinc-finger double domain;
373-399 1.53e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 39.28  E-value: 1.53e-04
                          10        20
                  ....*....|....*....|....*..
gi 1757649838 373 NYKNHVRIHTGEKPYVCTVpgCDKRFT 399
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPE--CGKSFK 25
zf-C2H2_8 pfam15909
C2H2-type zinc ribbon; This family carries three zinc-fingers in tandem.
 299-415 7.99e-04

C2H2-type zinc ribbon; This family carries three zinc-fingers in tandem.


Pssm-ID: 464935 [Multi-domain]  Cd Length: 98  Bit Score: 39.32  E-value: 7.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757649838 299 CSEDNCTKSFKTSGDLQKHIRTHTgerPFKCPIEGcgrsfttsnirkvhirthtgeRPYYCTEPGCGRAFASATNYKNHV 378
Cdd:pfam15909   2 CSSPGCCLSFPSVRDLAQHLRTHC---PPTQSLEG---------------------KLFRCSALSCTETFPSMQELVAHS 57

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1757649838 379 RIHTGEKPYVcTVPGCDKRFTEYSSLYKH-HVVHTHSK 415
Cdd:pfam15909  58 KLHYKPNRYF-KCENCLLRFRTHRSLFKHlHVCAEHAQ 94
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 297-321 1.49e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 36.12  E-value: 1.49e-03
                          10        20
                  ....*....|....*....|....*
gi 1757649838 297 YRCSEdnCTKSFKTSGDLQKHIRTH 321
Cdd:pfam00096   1 YKCPD--CGKSFSRKSNLKRHLRTH 23
zf-H2C2_2 pfam13465
Zinc-finger double domain;
345-370 1.72e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 36.20  E-value: 1.72e-03
                          10        20
                  ....*....|....*....|....*.
gi 1757649838 345 KVHIRTHTGERPYYCTEpgCGRAFAS 370
Cdd:pfam13465   3 KRHMRTHTGEKPYKCPE--CGKSFKS 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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