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Conserved domains on  [gi|1734328596|ref|NP_001360612|]
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RING-type domain-containing protein [Caenorhabditis elegans]

Protein Classification

RING finger protein( domain architecture ID 10630178)

RING finger protein may function as an E3 ubiquitin protein ligase that mediates the ubiquitination of target proteins by bringing the ubiquitin-charged E2 ubiquitin-conjugating enzyme and the acceptor protein together to enable the direct transfer of ubiquitin; similar to Homo sapiens E3 ubiquitin-protein ligase RNF10

CATH:  3.30.40.10
EC:  2.3.2.27
Gene Ontology:  GO:0046872|GO:0051865|GO:0016567|GO:0061630
PubMed:  19489725|11007473|22154517
SCOP:  3000160

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-RING_5 pfam14634
zinc-RING finger domain;
11-59 3.20e-04

zinc-RING finger domain;


:

Pssm-ID: 434085 [Multi-domain]  Cd Length: 43  Bit Score: 38.18  E-value: 3.20e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1734328596  11 CFQCGKLYESITKPddeailvpVLGACLHSICILCATGLESPNSCPICE 59
Cdd:pfam14634   2 CNKCFKELSKTRPF--------YLTSCGHIFCEECLTRLLQERQCPICK 42
 
Name Accession Description Interval E-value
zf-RING_5 pfam14634
zinc-RING finger domain;
11-59 3.20e-04

zinc-RING finger domain;


Pssm-ID: 434085 [Multi-domain]  Cd Length: 43  Bit Score: 38.18  E-value: 3.20e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1734328596  11 CFQCGKLYESITKPddeailvpVLGACLHSICILCATGLESPNSCPICE 59
Cdd:pfam14634   2 CNKCFKELSKTRPF--------YLTSCGHIFCEECLTRLLQERQCPICK 42
 
Name Accession Description Interval E-value
zf-RING_5 pfam14634
zinc-RING finger domain;
11-59 3.20e-04

zinc-RING finger domain;


Pssm-ID: 434085 [Multi-domain]  Cd Length: 43  Bit Score: 38.18  E-value: 3.20e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1734328596  11 CFQCGKLYESITKPddeailvpVLGACLHSICILCATGLESPNSCPICE 59
Cdd:pfam14634   2 CNKCFKELSKTRPF--------YLTSCGHIFCEECLTRLLQERQCPICK 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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